Wall clock time and date at job start Tue Mar 31 2020 22:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47436 * 2 1 4 4 C 1.53007 * 109.47168 * 119.99783 * 2 1 3 5 5 H 1.08996 * 109.47225 * 182.48672 * 4 2 1 6 6 C 1.52995 * 109.46907 * 302.49105 * 4 2 1 7 7 C 1.53004 * 109.46767 * 184.99896 * 6 4 2 8 8 N 1.46505 * 109.46840 * 180.02562 * 7 6 4 9 9 C 1.46506 * 119.99666 * 269.99568 * 8 7 6 10 10 C 1.34775 * 120.00230 * 90.00192 * 8 7 6 11 11 O 1.21279 * 120.00045 * 359.97438 * 10 8 7 12 12 C 1.50700 * 119.99906 * 179.97438 * 10 8 7 13 13 C 1.53776 * 113.61344 * 279.13483 * 12 10 8 14 14 C 1.53960 * 87.01667 * 220.04859 * 13 12 10 15 15 C 1.53781 * 87.11301 * 25.36537 * 14 13 12 16 16 N 1.46904 * 109.46900 * 62.49074 * 4 2 1 17 17 C 1.46897 * 111.00065 * 84.93588 * 16 4 2 18 18 C 1.50698 * 109.47046 * 181.17130 * 17 16 4 19 19 O 1.21290 * 119.99811 * 0.02562 * 18 17 16 20 20 N 1.34778 * 119.99851 * 180.02562 * 18 17 16 21 21 C 1.37102 * 119.99639 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00216 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99512 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00315 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99684 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47067 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47033 * 119.99876 * 25 23 21 28 28 H 1.48505 * 109.47167 * 239.99914 * 25 23 21 29 29 H 1.09004 * 109.47285 * 300.00588 * 1 2 3 30 30 H 1.09003 * 109.47188 * 59.99740 * 1 2 3 31 31 H 1.08998 * 109.47418 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47377 * 240.00039 * 2 1 3 33 33 H 1.08993 * 109.47760 * 173.36562 * 3 2 1 34 34 H 1.09001 * 109.47342 * 293.36662 * 3 2 1 35 35 H 1.08997 * 109.47328 * 53.36177 * 3 2 1 36 36 H 1.09001 * 109.47149 * 65.00008 * 6 4 2 37 37 H 1.08998 * 109.47086 * 304.99466 * 6 4 2 38 38 H 1.09001 * 109.47195 * 60.00140 * 7 6 4 39 39 H 1.08998 * 109.46966 * 299.99644 * 7 6 4 40 40 H 1.09002 * 109.47055 * 270.00081 * 9 8 7 41 41 H 1.08997 * 109.47103 * 30.00721 * 9 8 7 42 42 H 1.09002 * 109.46574 * 149.99849 * 9 8 7 43 43 H 1.09004 * 112.85097 * 50.33373 * 12 10 8 44 44 H 1.08999 * 113.61747 * 334.56484 * 13 12 10 45 45 H 1.09000 * 113.61867 * 105.47450 * 13 12 10 46 46 H 1.09000 * 113.53783 * 270.80901 * 14 13 12 47 47 H 1.09001 * 113.66293 * 139.93403 * 14 13 12 48 48 H 1.08994 * 113.61280 * 220.09202 * 15 14 13 49 49 H 1.08992 * 113.69283 * 89.19644 * 15 14 13 50 50 H 1.00898 * 110.99409 * 208.89704 * 16 4 2 51 51 H 1.08992 * 109.47321 * 301.17812 * 17 16 4 52 52 H 1.09001 * 109.46931 * 61.17904 * 17 16 4 53 53 H 0.96999 * 120.00341 * 0.02562 * 20 18 17 54 54 H 0.97004 * 120.00315 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1290 -0.6828 1.2719 6 6 1.4794 -0.0370 2.4977 7 6 2.0868 -0.6785 3.7469 8 7 1.5496 -0.0237 4.9424 9 6 2.2325 1.1424 5.5082 10 6 0.4272 -0.4942 5.5216 11 8 -0.1383 -1.4593 5.0529 12 6 -0.1250 0.1790 6.7516 13 6 0.5831 -0.2368 8.0517 14 6 -0.8075 -0.2424 8.7125 15 6 -1.3865 -0.4995 7.3112 16 7 1.6001 -2.1225 1.2196 17 6 2.5291 -2.9495 0.4380 18 6 2.0308 -4.3714 0.4061 19 8 1.0026 -4.6666 0.9778 20 7 2.7277 -5.3149 -0.2577 21 6 2.2740 -6.6084 -0.2871 22 1 1.3581 -6.8711 0.2212 23 6 2.9928 -7.5812 -0.9711 24 7 4.1069 -7.2614 -1.5900 25 14 2.3751 -9.3437 -1.0106 26 1 1.1082 -9.4416 -0.2420 27 1 2.1337 -9.7521 -2.4177 28 1 3.3926 -10.2386 -0.4030 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1235 1.4448 0.1187 34 1 1.7769 1.9209 -0.9434 35 1 1.5830 1.9895 0.8246 36 1 0.3958 -0.1530 2.5199 37 1 1.7311 1.0233 2.4748 38 1 3.1704 -0.5626 3.7247 39 1 1.8351 -1.7388 3.7698 40 1 2.9677 0.8121 6.2421 41 1 2.7351 1.6910 4.7117 42 1 1.5025 1.7916 5.9918 43 1 -0.2250 1.2581 6.6347 44 1 1.0463 -1.2221 8.0008 45 1 1.2526 0.5268 8.4478 46 1 -1.0935 0.7216 9.1331 47 1 -0.9590 -1.0696 9.4060 48 1 -2.3047 0.0524 7.1103 49 1 -1.4635 -1.5563 7.0562 50 1 1.4900 -2.4868 2.1541 51 1 2.5915 -2.5634 -0.5793 52 1 3.5165 -2.9209 0.8987 53 1 3.5501 -5.0789 -0.7146 54 1 4.6085 -7.9405 -2.0678 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485428365.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:05 Heat of formation + Delta-G solvation = -85.357548 kcal Electronic energy + Delta-G solvation = -30501.829211 eV Core-core repulsion = 26472.884234 eV Total energy + Delta-G solvation = -4028.944978 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.45952 -40.34773 -39.27866 -38.31141 -36.61619 -36.02872 -34.48649 -33.28397 -32.30387 -28.85313 -27.98523 -27.90797 -27.42633 -26.55599 -26.05957 -24.90061 -23.53394 -21.12960 -21.06653 -19.96063 -19.86105 -19.79720 -18.35264 -17.92645 -17.38193 -16.89631 -16.63978 -16.46299 -16.24609 -16.08532 -15.73544 -15.54536 -15.33134 -14.93234 -14.70928 -14.33981 -14.04220 -13.94324 -13.74808 -13.58899 -13.50705 -13.36691 -13.25633 -13.14088 -12.96179 -12.89652 -12.87141 -12.83619 -12.60932 -12.43470 -12.14500 -12.10897 -11.78656 -11.69501 -11.63914 -11.53910 -11.41999 -11.30657 -11.26444 -10.61886 -10.35439 -10.03621 -9.65264 -9.24364 -8.49121 -5.97806 1.33917 1.38656 1.53517 1.62569 2.02917 2.04429 2.27367 2.92704 3.17650 3.46903 3.49969 3.61170 3.70932 3.85630 3.86955 3.90742 3.98712 4.15302 4.28008 4.29788 4.35381 4.37604 4.43865 4.48430 4.53331 4.60182 4.61827 4.66977 4.75279 4.78445 4.84581 4.87684 4.89465 4.95118 4.98728 5.03625 5.07998 5.12079 5.16847 5.18515 5.25316 5.33145 5.38552 5.49400 5.53112 5.57860 5.59669 5.91641 6.17075 6.40853 6.42059 6.58678 7.10799 7.22700 7.53797 8.10627 8.68649 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010435 B = 0.002578 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.644342 B =10858.443913 C =12691.083680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 C -0.139 4.139 4 C 0.096 3.904 5 H 0.061 0.939 6 C -0.120 4.120 7 C 0.108 3.892 8 N -0.612 5.612 9 C 0.071 3.929 10 C 0.505 3.495 11 O -0.589 6.589 12 C -0.131 4.131 13 C -0.116 4.116 14 C -0.129 4.129 15 C -0.135 4.135 16 N -0.680 5.680 17 C 0.067 3.933 18 C 0.436 3.564 19 O -0.625 6.625 20 N -0.573 5.573 21 C -0.334 4.334 22 H 0.074 0.926 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.277 1.277 27 H -0.268 1.268 28 H -0.268 1.268 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.033 0.967 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.044 0.956 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.144 0.856 44 H 0.062 0.938 45 H 0.105 0.895 46 H 0.109 0.891 47 H 0.070 0.930 48 H 0.077 0.923 49 H 0.058 0.942 50 H 0.339 0.661 51 H 0.102 0.898 52 H 0.066 0.934 53 H 0.397 0.603 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.891 26.533 15.868 30.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 C -0.196 4.196 4 C -0.013 4.013 5 H 0.079 0.921 6 C -0.159 4.159 7 C -0.016 4.016 8 N -0.344 5.344 9 C -0.070 4.070 10 C 0.294 3.706 11 O -0.469 6.469 12 C -0.151 4.151 13 C -0.154 4.154 14 C -0.166 4.166 15 C -0.173 4.173 16 N -0.314 5.314 17 C -0.065 4.065 18 C 0.224 3.776 19 O -0.511 6.511 20 N -0.211 5.211 21 C -0.463 4.463 22 H 0.092 0.908 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.202 1.202 27 H -0.193 1.193 28 H -0.193 1.193 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.062 0.938 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.162 0.838 44 H 0.081 0.919 45 H 0.124 0.876 46 H 0.127 0.873 47 H 0.088 0.912 48 H 0.096 0.904 49 H 0.077 0.923 50 H 0.160 0.840 51 H 0.120 0.880 52 H 0.084 0.916 53 H 0.231 0.769 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.352 25.827 15.383 30.063 hybrid contribution 0.684 -1.586 -0.171 1.736 sum 0.331 24.240 15.211 28.620 Atomic orbital electron populations 1.21682 0.95828 1.00759 1.00872 1.21084 0.95851 0.96652 0.96762 1.21823 1.01404 0.94026 1.02376 1.21647 0.97729 0.86562 0.95378 0.92121 1.22041 1.00539 1.01130 0.92193 1.21522 0.98952 0.96559 0.84544 1.47978 1.26248 1.32131 1.28028 1.22128 0.98289 0.86473 1.00145 1.21388 0.80189 0.83560 0.85442 1.90757 1.60409 1.29812 1.65962 1.22932 0.98763 1.02227 0.91224 1.22818 0.97639 1.02047 0.92857 1.22862 0.95025 1.03522 0.95222 1.22833 0.96852 1.00476 0.97115 1.60084 1.49339 1.02038 1.19956 1.21559 0.94494 0.89447 1.00990 1.20971 0.85642 0.88386 0.82629 1.90515 1.27458 1.83113 1.50026 1.41926 1.24119 1.07778 1.47259 1.19666 1.08639 0.85402 1.32629 0.90794 1.26029 0.95709 1.03929 0.95530 1.69671 1.15715 1.36476 1.34160 0.84885 0.78143 0.76968 0.78404 1.20153 1.19336 1.19304 0.92879 0.92799 0.94793 0.92404 0.91601 0.92199 0.91660 0.93141 0.87994 0.88261 0.93751 0.91337 0.89239 0.88913 0.83840 0.91944 0.87635 0.87273 0.91171 0.90425 0.92314 0.84043 0.87994 0.91589 0.76919 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 8.64 71.98 0.62 -2.94 16 2 C -0.08 -1.95 2.83 -10.79 -0.03 -1.98 16 3 C -0.14 -2.17 8.72 71.98 0.63 -1.54 16 4 C 0.10 2.38 1.84 44.92 0.08 2.46 16 5 H 0.06 1.29 7.82 -2.39 -0.02 1.27 16 6 C -0.12 -2.63 4.38 30.59 0.13 -2.50 16 7 C 0.11 2.42 5.24 86.38 0.45 2.87 16 8 N -0.61 -11.67 2.87 -846.73 -2.43 -14.11 16 9 C 0.07 0.57 10.19 127.77 1.30 1.88 16 10 C 0.50 12.68 7.20 87.66 0.63 13.32 16 11 O -0.59 -22.31 15.49 -3.03 -0.05 -22.35 16 12 C -0.13 -2.05 2.93 -11.01 -0.03 -2.09 16 13 C -0.12 -1.41 7.55 31.18 0.24 -1.18 16 14 C -0.13 -1.50 8.09 31.18 0.25 -1.24 16 15 C -0.13 -2.48 7.40 31.12 0.23 -2.25 16 16 N -0.68 -24.08 5.26 -495.59 -2.60 -26.69 16 17 C 0.07 2.52 5.96 85.56 0.51 3.03 16 18 C 0.44 22.47 7.82 87.66 0.69 23.15 16 19 O -0.62 -38.04 15.80 -3.06 -0.05 -38.09 16 20 N -0.57 -31.15 5.29 -306.99 -1.62 -32.77 16 21 C -0.33 -19.98 9.68 84.04 0.81 -19.17 16 22 H 0.07 4.78 7.16 -2.91 -0.02 4.76 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 24 N -0.92 -51.02 13.05 21.66 0.28 -50.74 16 25 Si 0.99 44.79 29.55 68.60 2.03 46.82 16 26 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 27 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 28 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 29 H 0.05 1.33 6.50 -2.38 -0.02 1.31 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.03 1.16 7.68 -2.39 -0.02 1.14 16 32 H 0.06 1.48 7.38 -2.39 -0.02 1.47 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 0.88 6.73 -2.39 -0.02 0.87 16 36 H 0.05 1.45 6.67 -2.39 -0.02 1.43 16 37 H 0.10 1.57 6.40 -2.39 -0.02 1.56 16 38 H 0.10 1.68 8.07 -2.39 -0.02 1.66 16 39 H 0.04 1.41 5.70 -2.39 -0.01 1.39 16 40 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.09 0.44 8.07 -2.39 -0.02 0.42 16 42 H 0.09 0.38 6.25 -2.39 -0.01 0.36 16 43 H 0.14 1.29 7.02 -2.39 -0.02 1.27 16 44 H 0.06 1.06 8.09 -2.39 -0.02 1.04 16 45 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.06 1.52 7.45 -2.39 -0.02 1.51 16 50 H 0.34 13.53 6.22 -89.70 -0.56 12.97 16 51 H 0.10 3.46 7.37 -2.39 -0.02 3.44 16 52 H 0.07 2.13 8.08 -2.39 -0.02 2.11 16 53 H 0.40 20.26 7.90 -92.71 -0.73 19.52 16 54 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -82.24 422.59 2.15 -80.09 By element: Atomic # 1 Polarization: 46.63 SS G_CDS: -0.39 Total: 46.24 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 6.98 Total: 11.59 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -6.38 Total: -124.30 kcal Atomic # 8 Polarization: -60.35 SS G_CDS: -0.10 Total: -60.44 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -82.24 2.15 -80.09 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485428365.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.264 kcal (2) G-P(sol) polarization free energy of solvation -82.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds