Wall clock time and date at job start Tue Mar 31 2020 22:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53010 * 109.47021 * 2 1 4 4 C 1.52999 * 109.47403 * 119.99661 * 2 1 3 5 5 H 1.09005 * 109.46852 * 60.00212 * 4 2 1 6 6 C 1.52998 * 109.47403 * 179.97438 * 4 2 1 7 7 C 1.52995 * 109.47383 * 185.00182 * 6 4 2 8 8 N 1.46501 * 109.47336 * 179.97438 * 7 6 4 9 9 C 1.46495 * 120.00487 * 270.00199 * 8 7 6 10 10 C 1.34776 * 119.99530 * 90.00598 * 8 7 6 11 11 O 1.21283 * 120.00020 * 353.95673 * 10 8 7 12 12 C 1.50705 * 119.99874 * 173.96829 * 10 8 7 13 13 C 1.52999 * 109.67440 * 57.84028 * 12 10 8 14 14 C 1.53347 * 109.67129 * 178.34145 * 12 10 8 15 15 C 1.52998 * 108.62962 * 52.22983 * 14 12 10 16 16 N 1.45762 * 110.50387 * 50.74641 * 15 14 12 17 17 C 1.33348 * 124.10227 * 340.89754 * 16 15 14 18 18 O 1.21282 * 118.24528 * 182.21894 * 17 16 15 19 19 C 1.50174 * 123.51166 * 2.24493 * 17 16 15 20 20 N 1.46496 * 109.47289 * 300.00734 * 4 2 1 21 21 C 1.36930 * 120.00737 * 84.99435 * 20 4 2 22 22 H 1.08010 * 119.99545 * 0.02562 * 21 20 4 23 23 C 1.38805 * 120.00500 * 179.72193 * 21 20 4 24 24 N 1.31623 * 120.00401 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99758 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47291 * 90.00018 * 25 23 21 27 27 H 1.48497 * 109.46972 * 209.99470 * 25 23 21 28 28 H 1.48499 * 109.47065 * 329.99453 * 25 23 21 29 29 H 1.08996 * 109.47332 * 59.99782 * 1 2 3 30 30 H 1.09005 * 109.46943 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46996 * 300.00054 * 1 2 3 32 32 H 1.08999 * 109.47593 * 240.00411 * 2 1 3 33 33 H 1.09004 * 109.46930 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.46757 * 300.00076 * 3 2 1 35 35 H 1.08992 * 109.46957 * 60.00009 * 3 2 1 36 36 H 1.09003 * 109.47401 * 305.00545 * 6 4 2 37 37 H 1.09002 * 109.46810 * 65.00329 * 6 4 2 38 38 H 1.09003 * 109.47148 * 300.00517 * 7 6 4 39 39 H 1.09002 * 109.47028 * 60.00280 * 7 6 4 40 40 H 1.08999 * 109.47258 * 84.73290 * 9 8 7 41 41 H 1.08998 * 109.47527 * 204.73835 * 9 8 7 42 42 H 1.09011 * 109.46895 * 324.73793 * 9 8 7 43 43 H 1.08997 * 109.46793 * 59.99850 * 13 12 10 44 44 H 1.08997 * 109.46984 * 180.02562 * 13 12 10 45 45 H 1.09003 * 109.47006 * 300.00429 * 13 12 10 46 46 H 1.09006 * 109.59630 * 171.95416 * 14 12 10 47 47 H 1.09001 * 109.60584 * 292.43915 * 14 12 10 48 48 H 1.09002 * 109.30150 * 290.43085 * 15 14 12 49 49 H 1.09000 * 109.12341 * 170.94987 * 15 14 12 50 50 H 0.97001 * 117.94475 * 160.91818 * 16 15 14 51 51 H 1.09005 * 109.40433 * 222.28511 * 19 17 16 52 52 H 1.09000 * 109.40705 * 102.54739 * 19 17 16 53 53 H 0.97005 * 119.99652 * 264.99547 * 20 4 2 54 54 H 0.96996 * 120.00146 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6767 -1.7489 1.2493 6 6 3.5700 -0.7217 1.2489 7 6 4.0800 -1.5490 2.4305 8 7 5.5450 -1.5501 2.4299 9 6 6.2766 -2.5900 1.7022 10 6 6.2198 -0.5942 3.0988 11 8 5.6192 0.3277 3.6091 12 6 7.7206 -0.6709 3.2126 13 6 8.3421 -0.7047 1.8150 14 6 8.2430 0.5492 3.9807 15 6 7.4745 0.6630 5.2987 16 7 7.4843 -0.6110 6.0070 17 6 7.7471 -1.7846 5.4311 18 8 7.6862 -2.7853 6.1136 19 6 8.1151 -1.9336 3.9828 20 7 1.5516 -0.0306 2.4454 21 6 0.3102 -0.3210 2.9448 22 1 -0.3089 -1.0595 2.4570 23 6 -0.1502 0.3291 4.0815 24 7 -1.3438 0.0504 4.5612 25 14 0.9236 1.6008 4.9296 26 1 0.6507 2.9423 4.3541 27 1 0.6200 1.6148 6.3831 28 1 2.3536 1.2562 4.7259 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.9331 -1.1563 0.3175 37 1 3.9337 0.3019 1.3383 38 1 3.7170 -1.1145 3.3619 39 1 3.7164 -2.5727 2.3412 40 1 6.3763 -2.2998 0.6563 41 1 7.2666 -2.7127 2.1412 42 1 5.7309 -3.5314 1.7676 43 1 8.0663 0.1998 1.2728 44 1 9.4272 -0.7606 1.9012 45 1 7.9753 -1.5778 1.2753 46 1 9.3061 0.4238 4.1868 47 1 8.0871 1.4497 3.3865 48 1 6.4441 0.9518 5.0911 49 1 7.9438 1.4248 5.9211 50 1 7.2869 -0.6045 6.9567 51 1 7.5915 -2.7924 3.5626 52 1 9.1905 -2.0891 3.8964 53 1 2.1078 0.6324 2.8837 54 1 -1.6656 0.5050 5.3553 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485433136.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:26 Heat of formation + Delta-G solvation = -70.950977 kcal Electronic energy + Delta-G solvation = -32580.755517 eV Core-core repulsion = 28552.435256 eV Total energy + Delta-G solvation = -4028.320262 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.42718 -40.37328 -39.13827 -37.44997 -36.98369 -35.26046 -34.75889 -32.91576 -31.79236 -30.59150 -29.08052 -28.13631 -27.86345 -27.08126 -24.88250 -24.65916 -23.60895 -22.44466 -21.10048 -20.45588 -19.76605 -19.45109 -18.50323 -17.92912 -17.02225 -16.87144 -16.78103 -16.51499 -16.24591 -15.87282 -15.47560 -15.44999 -15.05147 -15.00518 -14.85943 -14.66135 -14.44251 -14.34945 -14.01570 -13.66033 -13.49508 -13.27623 -13.14650 -13.04386 -12.99723 -12.80659 -12.78391 -12.62453 -12.48934 -12.45093 -12.21790 -12.07454 -12.00668 -11.81814 -11.70727 -11.43757 -11.29315 -11.23630 -10.89691 -10.88642 -10.65074 -9.88826 -9.55944 -9.17512 -7.97597 -5.24421 1.32138 1.36394 1.43360 1.52816 1.60086 2.01848 2.31455 2.48783 3.30087 3.35024 3.44309 3.52057 3.67749 3.78165 3.90196 4.00977 4.14194 4.17445 4.25899 4.34804 4.38678 4.42086 4.46327 4.55915 4.62245 4.65400 4.67790 4.70642 4.77434 4.84013 4.84619 4.94147 4.94956 4.98176 5.02429 5.08378 5.14374 5.18385 5.26805 5.27957 5.36187 5.36865 5.43417 5.58613 5.62414 5.69361 5.80720 5.88923 6.27689 6.31078 6.45225 7.10827 7.14990 7.22135 7.94445 8.10751 9.24475 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011837 B = 0.004030 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.876471 B = 6946.745751 C = 8106.339972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.102 4.102 3 C -0.133 4.133 4 C 0.180 3.820 5 H 0.047 0.953 6 C -0.118 4.118 7 C 0.122 3.878 8 N -0.611 5.611 9 C 0.047 3.953 10 C 0.504 3.496 11 O -0.566 6.566 12 C -0.075 4.075 13 C -0.155 4.155 14 C -0.106 4.106 15 C 0.078 3.922 16 N -0.712 5.712 17 C 0.505 3.495 18 O -0.612 6.612 19 C -0.129 4.129 20 N -0.743 5.743 21 C -0.191 4.191 22 H 0.069 0.931 23 C -0.062 4.062 24 N -0.985 5.985 25 Si 0.933 3.067 26 H -0.285 1.285 27 H -0.305 1.305 28 H -0.266 1.266 29 H 0.050 0.950 30 H 0.037 0.963 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.027 0.973 36 H 0.097 0.903 37 H 0.054 0.946 38 H 0.042 0.958 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.099 0.901 45 H 0.094 0.906 46 H 0.107 0.893 47 H 0.094 0.906 48 H 0.080 0.920 49 H 0.093 0.907 50 H 0.396 0.604 51 H 0.118 0.882 52 H 0.149 0.851 53 H 0.359 0.641 54 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.846 -1.985 -11.533 30.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.123 4.123 3 C -0.190 4.190 4 C 0.071 3.929 5 H 0.065 0.935 6 C -0.157 4.157 7 C -0.001 4.001 8 N -0.342 5.342 9 C -0.094 4.094 10 C 0.293 3.707 11 O -0.446 6.446 12 C -0.078 4.078 13 C -0.211 4.211 14 C -0.143 4.143 15 C -0.045 4.045 16 N -0.361 5.361 17 C 0.294 3.706 18 O -0.495 6.495 19 C -0.167 4.167 20 N -0.386 5.386 21 C -0.322 4.322 22 H 0.087 0.913 23 C -0.253 4.253 24 N -0.638 5.638 25 Si 0.764 3.236 26 H -0.212 1.212 27 H -0.233 1.233 28 H -0.191 1.191 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.047 0.953 36 H 0.115 0.885 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.126 0.874 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.118 0.882 45 H 0.112 0.888 46 H 0.125 0.875 47 H 0.112 0.888 48 H 0.097 0.903 49 H 0.111 0.889 50 H 0.230 0.770 51 H 0.136 0.864 52 H 0.167 0.833 53 H 0.192 0.808 54 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 27.371 -2.114 -11.185 29.644 hybrid contribution -0.715 1.072 1.850 2.254 sum 26.656 -1.043 -9.335 28.262 Atomic orbital electron populations 1.21765 0.96537 1.00407 1.00808 1.21597 0.95284 0.96861 0.98542 1.21695 1.00492 0.96391 1.00469 1.20475 0.92064 0.94644 0.85687 0.93458 1.22032 0.94649 1.00238 0.98799 1.21340 0.79043 1.00766 0.98934 1.47967 1.06391 1.28771 1.51098 1.22765 0.98414 0.90497 0.97712 1.21254 0.90845 0.81348 0.77248 1.90600 1.71295 1.34669 1.47997 1.20925 0.89957 0.96855 1.00100 1.22328 1.02874 1.04656 0.91258 1.21818 1.00651 0.97675 0.94199 1.22107 1.03652 0.84098 0.94593 1.45591 1.69351 1.07565 1.13547 1.20789 0.75748 0.82382 0.91713 1.90740 1.55800 1.37561 1.65429 1.22135 1.07024 0.98918 0.88669 1.42862 1.16456 1.48133 1.31115 1.19014 0.91928 1.16057 1.05216 0.91327 1.25171 0.97627 1.02653 0.99858 1.69833 1.19851 1.48031 1.26085 0.85713 0.79825 0.80605 0.77479 1.21178 1.23292 1.19105 0.93095 0.94427 0.93767 0.89696 0.92173 0.92522 0.95333 0.88493 0.92742 0.93960 0.89799 0.89534 0.87440 0.90427 0.91847 0.88227 0.88769 0.87470 0.88763 0.90272 0.88886 0.76951 0.86381 0.83294 0.80830 0.93926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 8.26 71.98 0.59 -4.48 16 2 C -0.10 -3.22 2.80 -10.79 -0.03 -3.25 16 3 C -0.13 -4.10 8.68 71.99 0.63 -3.47 16 4 C 0.18 6.32 2.19 44.99 0.10 6.42 16 5 H 0.05 1.74 8.08 -2.38 -0.02 1.72 16 6 C -0.12 -3.31 4.57 30.59 0.14 -3.17 16 7 C 0.12 3.62 5.29 86.38 0.46 4.07 16 8 N -0.61 -13.61 2.87 -846.75 -2.43 -16.04 16 9 C 0.05 0.54 8.23 127.77 1.05 1.59 16 10 C 0.50 12.41 5.85 87.66 0.51 12.92 16 11 O -0.57 -19.36 12.75 -3.04 -0.04 -19.40 16 12 C -0.07 -1.08 0.51 -52.79 -0.03 -1.11 16 13 C -0.15 -1.04 8.09 71.98 0.58 -0.46 16 14 C -0.11 -1.45 4.71 30.71 0.14 -1.31 16 15 C 0.08 1.57 6.53 86.52 0.56 2.14 16 16 N -0.71 -16.64 5.44 -467.17 -2.54 -19.18 16 17 C 0.51 12.74 7.38 87.71 0.65 13.38 16 18 O -0.61 -20.93 17.78 -3.04 -0.05 -20.99 16 19 C -0.13 -1.91 4.36 29.71 0.13 -1.78 16 20 N -0.74 -34.11 3.49 -322.95 -1.13 -35.24 16 21 C -0.19 -10.64 8.05 84.03 0.68 -9.96 16 22 H 0.07 4.12 7.63 -2.91 -0.02 4.10 16 23 C -0.06 -3.77 5.50 84.86 0.47 -3.30 16 24 N -0.99 -64.65 13.97 21.65 0.30 -64.35 16 25 Si 0.93 49.42 27.73 68.60 1.90 51.32 16 26 H -0.28 -14.81 7.11 99.48 0.71 -14.10 16 27 H -0.31 -16.58 7.11 99.48 0.71 -15.88 16 28 H -0.27 -13.71 6.52 99.48 0.65 -13.06 16 29 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.04 1.37 8.14 -2.38 -0.02 1.36 16 31 H 0.04 2.03 6.01 -2.39 -0.01 2.01 16 32 H 0.08 2.14 8.14 -2.39 -0.02 2.13 16 33 H 0.06 1.63 6.55 -2.38 -0.02 1.62 16 34 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.03 1.05 7.60 -2.39 -0.02 1.04 16 36 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.05 1.70 6.71 -2.39 -0.02 1.68 16 38 H 0.04 1.69 7.13 -2.39 -0.02 1.68 16 39 H 0.08 2.27 7.94 -2.39 -0.02 2.26 16 40 H 0.09 0.62 7.56 -2.39 -0.02 0.60 16 41 H 0.11 0.81 2.95 -2.39 -0.01 0.81 16 42 H 0.08 0.85 7.97 -2.38 -0.02 0.83 16 43 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 45 H 0.09 0.41 4.13 -2.39 -0.01 0.40 16 46 H 0.11 0.85 8.12 -2.38 -0.02 0.83 16 47 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.08 2.26 5.16 -2.60 -0.01 2.25 16 49 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 50 H 0.40 9.28 8.80 -92.71 -0.82 8.46 16 51 H 0.12 1.68 5.17 -2.38 -0.01 1.67 16 52 H 0.15 1.13 8.10 -2.39 -0.02 1.11 16 53 H 0.36 17.24 5.66 -92.70 -0.52 16.71 16 54 H 0.25 16.03 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -83.94 398.64 2.16 -81.78 By element: Atomic # 1 Polarization: 34.34 SS G_CDS: -0.48 Total: 33.86 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 6.63 Total: 8.25 kcal Atomic # 7 Polarization: -129.02 SS G_CDS: -5.80 Total: -134.81 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -0.09 Total: -40.39 kcal Atomic # 14 Polarization: 49.42 SS G_CDS: 1.90 Total: 51.32 kcal Total: -83.94 2.16 -81.78 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485433136.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.825 kcal (2) G-P(sol) polarization free energy of solvation -83.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds