Wall clock time and date at job start Tue Mar 31 2020 22:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21281 * 119.99857 * 2 1 4 4 N 1.34781 * 120.00134 * 180.02562 * 2 1 3 5 5 C 1.46920 * 120.63113 * 359.97438 * 4 2 1 6 6 C 1.53189 * 108.77406 * 233.61375 * 5 4 2 7 7 C 1.53042 * 109.31371 * 305.36087 * 6 5 4 8 8 C 1.53042 * 109.53222 * 61.36655 * 7 6 5 9 9 H 1.08992 * 109.49970 * 58.62432 * 8 7 6 10 10 C 1.50701 * 109.49404 * 178.68377 * 8 7 6 11 11 O 1.21288 * 120.00292 * 359.93636 * 10 8 7 12 12 N 1.34777 * 120.00115 * 179.97438 * 10 8 7 13 13 C 1.46500 * 120.00376 * 180.02562 * 12 10 8 14 14 C 1.52997 * 109.47473 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47060 * 180.02562 * 14 13 12 16 16 H 1.09002 * 109.47069 * 304.99600 * 15 14 13 17 17 N 1.46498 * 109.47465 * 65.00143 * 15 14 13 18 18 C 1.36933 * 120.00047 * 205.00103 * 17 15 14 19 19 H 1.07998 * 120.00056 * 359.97438 * 18 17 15 20 20 C 1.38810 * 120.00135 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00083 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00120 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47199 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47584 * 120.00018 * 22 20 18 25 25 H 1.48504 * 109.46819 * 240.00069 * 22 20 18 26 26 C 1.53006 * 109.46846 * 185.00166 * 15 14 13 27 27 C 1.53000 * 109.46846 * 179.97438 * 26 15 14 28 28 C 1.52996 * 109.46968 * 299.99736 * 26 15 14 29 29 C 1.46935 * 120.60179 * 180.02562 * 4 2 1 30 30 H 1.09006 * 109.46964 * 239.99539 * 1 2 3 31 31 H 1.08993 * 109.47217 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.47172 * 119.99820 * 1 2 3 33 33 H 1.08991 * 109.59029 * 113.82149 * 5 4 2 34 34 H 1.09004 * 109.70105 * 353.46621 * 5 4 2 35 35 H 1.09000 * 109.49813 * 185.41332 * 6 5 4 36 36 H 1.08999 * 109.50473 * 65.31549 * 6 5 4 37 37 H 1.08995 * 109.45838 * 301.35142 * 7 6 5 38 38 H 1.09002 * 109.45121 * 181.37870 * 7 6 5 39 39 H 0.97004 * 120.00228 * 0.02562 * 12 10 8 40 40 H 1.09002 * 109.47129 * 59.99747 * 13 12 10 41 41 H 1.08998 * 109.46845 * 300.00553 * 13 12 10 42 42 H 1.09002 * 109.47153 * 59.99757 * 14 13 12 43 43 H 1.09001 * 109.46832 * 299.99948 * 14 13 12 44 44 H 0.96998 * 119.99659 * 24.99845 * 17 15 14 45 45 H 0.96993 * 119.99960 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.47241 * 59.99481 * 26 15 14 47 47 H 1.09002 * 109.47069 * 299.99434 * 27 26 15 48 48 H 1.09001 * 109.47624 * 59.99715 * 27 26 15 49 49 H 1.09002 * 109.46642 * 179.97438 * 27 26 15 50 50 H 1.09001 * 109.47336 * 59.99701 * 28 26 15 51 51 H 1.08998 * 109.47375 * 180.02562 * 28 26 15 52 52 H 1.09001 * 109.47456 * 299.99957 * 28 26 15 53 53 H 1.08998 * 109.61544 * 6.61913 * 29 4 2 54 54 H 1.09000 * 109.56122 * 246.18924 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4604 -2.4476 -0.0005 6 6 1.9689 -3.2995 1.1667 7 6 3.4903 -3.4345 1.0697 8 6 4.1340 -2.0494 1.1662 9 1 3.8509 -1.5814 2.1089 10 6 5.6335 -2.1862 1.1030 11 8 6.1383 -3.2835 0.9930 12 7 6.4137 -1.0892 1.1696 13 6 7.8714 -1.2222 1.1077 14 6 8.5144 0.1628 1.2043 15 6 10.0367 0.0239 1.1390 16 1 10.3721 -0.6660 1.9134 17 7 10.4240 -0.4923 -0.1762 18 6 11.6035 -1.1719 -0.3247 19 1 12.2484 -1.3270 0.5276 20 6 11.9703 -1.6615 -1.5707 21 7 11.1841 -1.4729 -2.6094 22 14 13.5789 -2.5893 -1.7732 23 1 14.2744 -2.6659 -0.4634 24 1 13.3002 -3.9617 -2.2671 25 1 14.4414 -1.8772 -2.7501 26 6 10.6836 1.3927 1.3604 27 6 12.2059 1.2537 1.2957 28 6 10.2127 2.3611 0.2735 29 6 3.6502 -1.1826 0.0000 30 1 -0.3633 -0.5139 0.8900 31 1 -0.3633 1.0276 0.0005 32 1 -0.3633 -0.5138 -0.8900 33 1 1.6423 -2.9693 -0.9401 34 1 0.3917 -2.2679 0.1167 35 1 1.5124 -4.2883 1.1214 36 1 1.7056 -2.8196 2.1093 37 1 3.7542 -3.8919 0.1162 38 1 3.8519 -4.0606 1.8854 39 1 6.0101 -0.2116 1.2586 40 1 8.1539 -1.6893 0.1643 41 1 8.2153 -1.8407 1.9367 42 1 8.2319 0.6295 2.1480 43 1 8.1704 0.7816 0.3755 44 1 9.8450 -0.3527 -0.9417 45 1 11.4403 -1.8154 -3.4800 46 1 10.3953 1.7768 2.3389 47 1 12.5410 0.5640 2.0704 48 1 12.4945 0.8694 0.3174 49 1 12.6667 2.2290 1.4530 50 1 9.1282 2.4599 0.3199 51 1 10.6738 3.3361 0.4309 52 1 10.5009 1.9770 -0.7051 53 1 4.0267 -0.1667 0.1192 54 1 4.0111 -1.6004 -0.9398 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485786501.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:30 Heat of formation + Delta-G solvation = -107.569348 kcal Electronic energy + Delta-G solvation = -30589.716589 eV Core-core repulsion = 26559.808435 eV Total energy + Delta-G solvation = -4029.908154 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.60809 -40.51772 -39.08892 -38.09758 -36.07520 -34.73594 -34.19379 -32.95133 -32.23381 -31.07283 -30.31351 -27.89762 -27.04752 -26.11172 -25.29040 -24.58884 -22.78020 -22.33940 -21.14944 -20.12994 -20.02423 -19.17538 -18.40179 -17.71142 -17.20378 -17.13780 -16.62717 -16.46420 -16.23199 -15.89849 -15.56628 -15.30755 -15.15284 -15.02843 -14.82641 -14.51981 -14.30642 -14.19230 -14.01405 -14.00611 -13.60160 -13.21885 -13.03864 -12.99059 -12.95257 -12.74424 -12.59661 -12.54130 -12.38435 -12.26413 -12.04316 -11.99283 -11.91367 -11.81605 -11.78218 -11.65584 -11.32806 -11.15047 -11.03110 -10.83422 -10.70512 -10.12217 -9.74143 -8.88233 -7.86962 -5.10536 1.45022 1.46457 1.46852 1.54536 1.64250 1.96342 2.22014 2.59556 3.46685 3.50924 3.59672 3.75362 3.84784 3.90741 3.97653 4.02862 4.12494 4.16841 4.22430 4.34704 4.40875 4.41962 4.48077 4.51632 4.59620 4.65108 4.66522 4.72497 4.76768 4.80986 4.89316 4.90326 4.98078 5.01317 5.04916 5.13494 5.18167 5.18913 5.21987 5.29531 5.36737 5.40456 5.44172 5.45415 5.46434 5.59382 5.66508 5.85820 6.35618 6.40419 6.50839 7.13927 7.20770 7.42413 8.19935 8.41902 9.36994 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013456 B = 0.002475 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.423471 B =11310.466643 C =12207.686616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.503 3.497 3 O -0.599 6.599 4 N -0.609 5.609 5 C 0.098 3.902 6 C -0.125 4.125 7 C -0.103 4.103 8 C -0.105 4.105 9 H 0.117 0.883 10 C 0.510 3.490 11 O -0.582 6.582 12 N -0.715 5.715 13 C 0.134 3.866 14 C -0.120 4.120 15 C 0.176 3.824 16 H 0.040 0.960 17 N -0.723 5.723 18 C -0.205 4.205 19 H 0.074 0.926 20 C -0.081 4.081 21 N -0.970 5.970 22 Si 0.954 3.046 23 H -0.267 1.267 24 H -0.302 1.302 25 H -0.298 1.298 26 C -0.104 4.104 27 C -0.140 4.140 28 C -0.133 4.133 29 C 0.122 3.878 30 H 0.117 0.883 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.076 0.924 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.413 0.587 40 H 0.037 0.963 41 H 0.051 0.949 42 H 0.100 0.900 43 H 0.072 0.928 44 H 0.371 0.629 45 H 0.245 0.755 46 H 0.080 0.920 47 H 0.040 0.960 48 H 0.047 0.953 49 H 0.050 0.950 50 H 0.061 0.939 51 H 0.052 0.948 52 H 0.030 0.970 53 H 0.086 0.914 54 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.292 2.136 11.083 28.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.295 3.705 3 O -0.480 6.480 4 N -0.342 5.342 5 C -0.023 4.023 6 C -0.163 4.163 7 C -0.141 4.141 8 C -0.127 4.127 9 H 0.135 0.865 10 C 0.296 3.704 11 O -0.462 6.462 12 N -0.367 5.367 13 C 0.010 3.990 14 C -0.158 4.158 15 C 0.067 3.933 16 H 0.058 0.942 17 N -0.363 5.363 18 C -0.338 4.338 19 H 0.092 0.908 20 C -0.272 4.272 21 N -0.623 5.623 22 Si 0.786 3.214 23 H -0.191 1.191 24 H -0.230 1.230 25 H -0.226 1.226 26 C -0.125 4.125 27 C -0.197 4.197 28 C -0.190 4.190 29 C -0.002 4.002 30 H 0.135 0.865 31 H 0.106 0.894 32 H 0.130 0.870 33 H 0.094 0.906 34 H 0.143 0.857 35 H 0.122 0.878 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.249 0.751 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.118 0.882 43 H 0.090 0.910 44 H 0.203 0.797 45 H 0.054 0.946 46 H 0.099 0.901 47 H 0.059 0.941 48 H 0.066 0.934 49 H 0.069 0.931 50 H 0.080 0.920 51 H 0.071 0.929 52 H 0.049 0.951 53 H 0.105 0.895 54 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -25.453 1.819 11.075 27.818 hybrid contribution 1.409 -0.349 -0.972 1.747 sum -24.044 1.470 10.103 26.122 Atomic orbital electron populations 1.21979 0.87757 1.06147 1.06542 1.21749 0.92539 0.82155 0.74084 1.90713 1.72108 1.32910 1.52312 1.48250 1.05684 1.07455 1.72832 1.22138 0.98338 0.82290 0.99510 1.21930 0.93297 1.01905 0.99183 1.21371 0.96378 0.93564 1.02785 1.21632 0.89194 1.00072 1.01777 0.86469 1.21099 0.90234 0.83826 0.75195 1.90718 1.76756 1.27915 1.50791 1.46047 1.06949 1.09953 1.73709 1.21106 0.78892 0.98455 1.00581 1.21966 0.95284 0.94900 1.03646 1.20443 0.91931 0.93425 0.87462 0.94161 1.42542 1.22402 1.65273 1.06090 1.19513 0.96938 1.23842 0.93463 0.90765 1.25343 1.01498 1.04158 0.96232 1.69803 1.39223 1.53588 0.99676 0.85319 0.80772 0.77736 0.77575 1.19129 1.23023 1.22570 1.21620 0.95591 0.96590 0.98679 1.21787 0.96269 0.99931 1.01710 1.21682 1.00736 0.98030 0.98550 1.21313 0.81452 1.00502 0.96927 0.86473 0.89408 0.86981 0.90597 0.85663 0.87846 0.90259 0.92514 0.91644 0.75089 0.94404 0.93043 0.88190 0.90991 0.79678 0.94645 0.90141 0.94050 0.93369 0.93121 0.92038 0.92872 0.95113 0.89529 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 8.67 71.24 0.62 -0.50 16 2 C 0.50 8.78 7.81 87.66 0.68 9.47 16 3 O -0.60 -16.76 16.50 -3.03 -0.05 -16.81 16 4 N -0.61 -9.19 2.97 -819.00 -2.43 -11.63 16 5 C 0.10 0.75 6.34 86.36 0.55 1.29 16 6 C -0.13 -1.06 6.08 30.67 0.19 -0.87 16 7 C -0.10 -1.80 4.46 30.62 0.14 -1.66 16 8 C -0.10 -2.07 2.67 -11.48 -0.03 -2.10 16 9 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 10 C 0.51 14.85 7.16 87.66 0.63 15.48 16 11 O -0.58 -22.79 15.98 -3.05 -0.05 -22.84 16 12 N -0.71 -19.33 5.46 -463.06 -2.53 -21.86 16 13 C 0.13 4.51 5.56 86.38 0.48 5.00 16 14 C -0.12 -3.52 4.36 30.59 0.13 -3.38 16 15 C 0.18 6.47 2.19 44.99 0.10 6.57 16 16 H 0.04 1.55 8.08 -2.39 -0.02 1.54 16 17 N -0.72 -34.60 3.69 -322.94 -1.19 -35.79 16 18 C -0.21 -11.07 7.57 84.03 0.64 -10.44 16 19 H 0.07 3.91 7.39 -2.91 -0.02 3.89 16 20 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 21 N -0.97 -60.35 13.06 21.65 0.28 -60.07 16 22 Si 0.95 47.56 29.55 68.60 2.03 49.58 16 23 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 24 H -0.30 -15.37 7.11 99.48 0.71 -14.66 16 25 H -0.30 -14.91 7.11 99.48 0.71 -14.21 16 26 C -0.10 -3.36 2.80 -10.79 -0.03 -3.39 16 27 C -0.14 -4.99 8.26 71.98 0.59 -4.40 16 28 C -0.13 -4.25 8.68 71.98 0.63 -3.63 16 29 C 0.12 2.46 5.57 86.34 0.48 2.94 16 30 H 0.12 0.15 7.70 -2.38 -0.02 0.13 16 31 H 0.09 0.73 8.12 -2.39 -0.02 0.71 16 32 H 0.11 0.27 7.94 -2.39 -0.02 0.25 16 33 H 0.08 0.59 8.14 -2.39 -0.02 0.58 16 34 H 0.13 0.08 5.95 -2.38 -0.01 0.07 16 35 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.06 1.20 8.13 -2.39 -0.02 1.18 16 38 H 0.06 1.29 8.07 -2.39 -0.02 1.27 16 39 H 0.41 8.57 8.02 -92.71 -0.74 7.83 16 40 H 0.04 1.65 7.75 -2.39 -0.02 1.63 16 41 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.07 2.12 6.71 -2.39 -0.02 2.11 16 44 H 0.37 19.59 7.80 -92.71 -0.72 18.86 16 45 H 0.24 14.98 8.31 -92.71 -0.77 14.21 16 46 H 0.08 2.13 8.14 -2.39 -0.02 2.12 16 47 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.05 2.11 6.01 -2.39 -0.01 2.09 16 49 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 50 H 0.06 1.72 6.54 -2.39 -0.02 1.71 16 51 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 52 H 0.03 1.21 7.60 -2.39 -0.02 1.19 16 53 H 0.09 1.96 6.61 -2.39 -0.02 1.94 16 54 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -79.54 418.49 1.73 -77.81 By element: Atomic # 1 Polarization: 36.03 SS G_CDS: -0.58 Total: 35.45 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 6.25 Total: 6.16 kcal Atomic # 7 Polarization: -123.48 SS G_CDS: -5.87 Total: -129.35 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -0.10 Total: -39.65 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.58 kcal Total: -79.54 1.73 -77.81 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485786501.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.758 kcal (2) G-P(sol) polarization free energy of solvation -79.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds