Wall clock time and date at job start Tue Mar 31 2020 22:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21282 * 119.99955 * 2 1 4 4 N 1.34776 * 120.00025 * 179.97438 * 2 1 3 5 5 C 1.46926 * 120.63121 * 359.97438 * 4 2 1 6 6 C 1.53196 * 108.77389 * 126.40953 * 5 4 2 7 7 C 1.53038 * 109.34160 * 54.61841 * 6 5 4 8 8 C 1.53038 * 109.53921 * 298.68535 * 7 6 5 9 9 H 1.09004 * 109.49267 * 301.34755 * 8 7 6 10 10 C 1.50700 * 109.49788 * 181.28329 * 8 7 6 11 11 O 1.21275 * 120.00102 * 0.06211 * 10 8 7 12 12 N 1.34781 * 119.99980 * 180.02562 * 10 8 7 13 13 C 1.46493 * 119.99920 * 179.97438 * 12 10 8 14 14 C 1.52998 * 109.47105 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47384 * 180.02562 * 14 13 12 16 16 H 1.09003 * 109.47082 * 305.00221 * 15 14 13 17 17 N 1.46498 * 109.47009 * 65.00045 * 15 14 13 18 18 C 1.36935 * 120.00239 * 204.99963 * 17 15 14 19 19 H 1.08004 * 120.00069 * 0.02562 * 18 17 15 20 20 C 1.38811 * 120.00368 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99540 * 359.72375 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72270 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72118 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72153 * 22 20 18 26 26 C 1.52995 * 109.47443 * 185.00170 * 15 14 13 27 27 C 1.53004 * 109.47420 * 305.00273 * 26 15 14 28 28 C 1.53009 * 109.46883 * 65.00220 * 26 15 14 29 29 C 1.46927 * 120.62825 * 179.97438 * 4 2 1 30 30 H 1.09003 * 109.47236 * 239.99831 * 1 2 3 31 31 H 1.08991 * 109.47219 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.46784 * 120.00765 * 1 2 3 33 33 H 1.08993 * 109.58477 * 246.19328 * 5 4 2 34 34 H 1.08997 * 109.58891 * 6.48107 * 5 4 2 35 35 H 1.09006 * 109.49395 * 174.58820 * 6 5 4 36 36 H 1.08995 * 109.49631 * 294.67874 * 6 5 4 37 37 H 1.08996 * 109.48911 * 178.63993 * 7 6 5 38 38 H 1.08998 * 109.43131 * 58.68352 * 7 6 5 39 39 H 0.97002 * 119.99393 * 359.97438 * 12 10 8 40 40 H 1.09011 * 109.47098 * 60.00172 * 13 12 10 41 41 H 1.08999 * 109.47501 * 300.00209 * 13 12 10 42 42 H 1.08997 * 109.46877 * 60.00415 * 14 13 12 43 43 H 1.08999 * 109.47306 * 300.00567 * 14 13 12 44 44 H 0.97004 * 119.99747 * 25.00702 * 17 15 14 45 45 H 0.97000 * 120.00481 * 0.27542 * 21 20 18 46 46 H 1.09003 * 109.47292 * 184.99767 * 26 15 14 47 47 H 1.08994 * 109.46805 * 59.99751 * 27 26 15 48 48 H 1.08994 * 109.47010 * 179.97438 * 27 26 15 49 49 H 1.09002 * 109.46717 * 300.00005 * 27 26 15 50 50 H 1.09003 * 109.46787 * 299.99856 * 28 26 15 51 51 H 1.08992 * 109.47069 * 59.99939 * 28 26 15 52 52 H 1.09000 * 109.46668 * 180.02562 * 28 26 15 53 53 H 1.09003 * 109.58364 * 113.80755 * 29 4 2 54 54 H 1.09000 * 109.58600 * 353.38157 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4604 -2.4476 0.0017 6 6 1.9684 -3.3003 -1.1653 7 6 3.4898 -3.4352 -1.0698 8 6 4.1336 -2.0502 -1.1665 9 1 3.8499 -1.5823 -2.1093 10 6 5.6330 -2.1870 -1.1040 11 8 6.1378 -3.2842 -0.9941 12 7 6.4132 -1.0900 -1.1710 13 6 7.8708 -1.2229 -1.1097 14 6 8.5137 0.1621 -1.2066 15 6 10.0361 0.0232 -1.1432 16 1 10.3139 -0.5228 -0.2417 17 7 10.5093 -0.7071 -2.3217 18 6 11.6922 -1.3950 -2.2716 19 1 12.2762 -1.3996 -1.3630 20 6 12.1409 -2.0866 -3.3884 21 7 11.4266 -2.0855 -4.4939 22 14 13.7543 -3.0256 -3.3198 23 1 14.8644 -2.1337 -3.7410 24 1 13.9955 -3.4944 -1.9315 25 1 13.6855 -4.1952 -4.2322 26 6 10.6743 1.4134 -1.1145 27 6 10.1851 2.2242 -2.3163 28 6 10.2789 2.1294 0.1787 29 6 3.6501 -1.1833 0.0000 30 1 -0.3634 -0.5139 0.8900 31 1 -0.3633 1.0276 -0.0005 32 1 -0.3633 -0.5140 -0.8899 33 1 1.6428 -2.9687 0.9414 34 1 0.3919 -2.2658 -0.1140 35 1 1.5118 -4.2891 -1.1191 36 1 1.7046 -2.8210 -2.1079 37 1 3.8513 -4.0615 -1.8853 38 1 3.7541 -3.8926 -0.1163 39 1 6.0094 -0.2125 -1.2598 40 1 8.2144 -1.8415 -1.9389 41 1 8.1537 -1.6900 -0.1664 42 1 8.1702 0.7809 -0.3777 43 1 8.2308 0.6288 -2.1501 44 1 9.9847 -0.7032 -3.1377 45 1 10.5886 -1.5982 -4.5295 46 1 11.7590 1.3163 -1.1589 47 1 9.1005 2.3213 -2.2718 48 1 10.6395 3.2147 -2.2955 49 1 10.4668 1.7141 -3.2375 50 1 9.1942 2.2266 0.2231 51 1 10.6274 1.5519 1.0348 52 1 10.7333 3.1200 0.1989 53 1 4.0113 -1.6012 0.9397 54 1 4.0266 -0.1674 -0.1192 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485786503.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:34 Heat of formation + Delta-G solvation = -109.809750 kcal Electronic energy + Delta-G solvation = -30555.798483 eV Core-core repulsion = 26525.793179 eV Total energy + Delta-G solvation = -4030.005305 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.65012 -40.56919 -39.26158 -38.12286 -36.10636 -35.40605 -34.21672 -32.92686 -32.28097 -30.92884 -30.23701 -27.99449 -26.84791 -26.10861 -25.27702 -24.64071 -23.37177 -22.44362 -21.28171 -20.04980 -19.96712 -19.41139 -18.47755 -17.78962 -17.24987 -17.12146 -16.69231 -16.60108 -16.39420 -15.98307 -15.66229 -15.52716 -15.23615 -15.12502 -14.98045 -14.70407 -14.43452 -14.24011 -14.18094 -13.66367 -13.57086 -13.26087 -13.22295 -13.00429 -12.95159 -12.76916 -12.68724 -12.58775 -12.55300 -12.05167 -12.02287 -11.98757 -11.92886 -11.90192 -11.68643 -11.66323 -11.44144 -11.21503 -11.02599 -10.86426 -10.74971 -10.20974 -9.75535 -9.04609 -8.35722 -5.27464 1.42529 1.54654 1.62399 1.65583 1.79110 1.91345 2.16450 2.70782 3.42119 3.48200 3.54661 3.71505 3.72828 3.82803 3.85318 3.96389 4.00301 4.12586 4.16321 4.18778 4.30216 4.40049 4.42401 4.45989 4.49888 4.57632 4.63737 4.67109 4.70029 4.71319 4.75434 4.85014 4.86175 4.87852 4.98881 5.01885 5.08497 5.11688 5.17616 5.18443 5.23245 5.32028 5.33527 5.38254 5.42741 5.54555 5.55794 5.68684 6.38537 6.43734 6.52820 7.12477 7.13680 7.14147 8.04765 8.15478 9.16446 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013631 B = 0.002493 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.589452 B =11229.958717 C =12765.025610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.504 3.496 3 O -0.598 6.598 4 N -0.610 5.610 5 C 0.101 3.899 6 C -0.127 4.127 7 C -0.102 4.102 8 C -0.107 4.107 9 H 0.109 0.891 10 C 0.511 3.489 11 O -0.582 6.582 12 N -0.715 5.715 13 C 0.135 3.865 14 C -0.121 4.121 15 C 0.185 3.815 16 H 0.035 0.965 17 N -0.740 5.740 18 C -0.317 4.317 19 H 0.062 0.938 20 C -0.108 4.108 21 N -0.979 5.979 22 Si 1.124 2.876 23 H -0.285 1.285 24 H -0.276 1.276 25 H -0.296 1.296 26 C -0.109 4.109 27 C -0.131 4.131 28 C -0.137 4.137 29 C 0.125 3.875 30 H 0.114 0.886 31 H 0.087 0.913 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.124 0.876 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.413 0.587 40 H 0.033 0.967 41 H 0.050 0.950 42 H 0.104 0.896 43 H 0.073 0.927 44 H 0.358 0.642 45 H 0.243 0.757 46 H 0.037 0.963 47 H 0.068 0.932 48 H 0.056 0.944 49 H 0.024 0.976 50 H 0.071 0.929 51 H 0.050 0.950 52 H 0.060 0.940 53 H 0.072 0.928 54 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.309 4.250 11.802 30.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.295 3.705 3 O -0.480 6.480 4 N -0.343 5.343 5 C -0.021 4.021 6 C -0.165 4.165 7 C -0.141 4.141 8 C -0.129 4.129 9 H 0.127 0.873 10 C 0.297 3.703 11 O -0.461 6.461 12 N -0.367 5.367 13 C 0.011 3.989 14 C -0.159 4.159 15 C 0.077 3.923 16 H 0.053 0.947 17 N -0.381 5.381 18 C -0.449 4.449 19 H 0.080 0.920 20 C -0.299 4.299 21 N -0.628 5.628 22 Si 0.950 3.050 23 H -0.212 1.212 24 H -0.202 1.202 25 H -0.223 1.223 26 C -0.131 4.131 27 C -0.189 4.189 28 C -0.195 4.195 29 C 0.001 3.999 30 H 0.132 0.868 31 H 0.106 0.894 32 H 0.132 0.868 33 H 0.100 0.900 34 H 0.142 0.858 35 H 0.122 0.878 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.250 0.750 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.122 0.878 43 H 0.092 0.908 44 H 0.190 0.810 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.087 0.913 48 H 0.075 0.925 49 H 0.044 0.956 50 H 0.090 0.910 51 H 0.069 0.931 52 H 0.079 0.921 53 H 0.090 0.910 54 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -25.470 3.051 11.262 28.015 hybrid contribution -0.437 1.074 0.122 1.166 sum -25.907 4.125 11.384 28.597 Atomic orbital electron populations 1.21982 0.87891 1.06127 1.06515 1.21717 0.92492 0.82174 0.74068 1.90710 1.72074 1.32874 1.52297 1.48256 1.05779 1.07413 1.72836 1.22130 0.98258 0.82229 0.99440 1.21935 0.93310 1.02002 0.99247 1.21363 0.96356 0.93474 1.02871 1.21655 0.89076 1.00277 1.01935 0.87295 1.21123 0.90276 0.83744 0.75136 1.90719 1.76764 1.27850 1.50781 1.46027 1.06695 1.10055 1.73873 1.21067 0.79123 0.98374 1.00372 1.22028 0.94985 0.95099 1.03795 1.20331 0.91682 0.91210 0.89121 0.94682 1.42576 1.23904 1.60007 1.11654 1.20323 0.99394 1.25866 0.99330 0.92029 1.27006 1.08045 1.02322 0.92512 1.70956 1.15798 1.47030 1.28971 0.82652 0.71737 0.75097 0.75499 1.21195 1.20152 1.22273 1.21621 0.99174 0.96134 0.96122 1.21681 1.01285 0.98734 0.97157 1.21817 1.02148 0.99874 0.95650 1.21321 0.81362 1.00390 0.96802 0.86763 0.89433 0.86776 0.90019 0.85805 0.87831 0.90814 0.92364 0.91778 0.75013 0.94810 0.93122 0.87821 0.90809 0.81028 0.94670 0.94429 0.91347 0.92537 0.95643 0.91040 0.93065 0.92091 0.91000 0.89421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 8.67 71.24 0.62 -0.34 16 2 C 0.50 8.07 7.81 87.66 0.68 8.75 16 3 O -0.60 -15.71 16.50 -3.04 -0.05 -15.77 16 4 N -0.61 -8.18 2.97 -818.95 -2.43 -10.62 16 5 C 0.10 0.63 6.34 86.36 0.55 1.18 16 6 C -0.13 -1.09 6.08 30.67 0.19 -0.90 16 7 C -0.10 -1.80 4.46 30.62 0.14 -1.66 16 8 C -0.11 -2.12 2.67 -11.47 -0.03 -2.15 16 9 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 10 C 0.51 14.91 7.16 87.66 0.63 15.54 16 11 O -0.58 -22.87 15.98 -3.01 -0.05 -22.92 16 12 N -0.71 -19.41 5.46 -463.06 -2.53 -21.94 16 13 C 0.13 4.64 5.56 86.38 0.48 5.12 16 14 C -0.12 -3.65 4.07 30.59 0.12 -3.53 16 15 C 0.19 7.15 2.06 44.99 0.09 7.24 16 16 H 0.04 1.45 8.08 -2.39 -0.02 1.43 16 17 N -0.74 -36.98 4.02 -322.95 -1.30 -38.28 16 18 C -0.32 -18.14 9.93 84.03 0.83 -17.31 16 19 H 0.06 3.48 7.83 -2.91 -0.02 3.46 16 20 C -0.11 -6.46 5.50 84.86 0.47 -5.99 16 21 N -0.98 -63.15 13.70 21.65 0.30 -62.85 16 22 Si 1.12 54.46 29.92 68.60 2.05 56.51 16 23 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 25 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 26 C -0.11 -3.73 2.88 -10.79 -0.03 -3.76 16 27 C -0.13 -4.22 8.59 71.98 0.62 -3.60 16 28 C -0.14 -3.48 8.96 71.99 0.64 -2.84 16 29 C 0.13 2.22 5.57 86.35 0.48 2.70 16 30 H 0.11 0.11 7.94 -2.39 -0.02 0.09 16 31 H 0.09 0.65 8.12 -2.39 -0.02 0.63 16 32 H 0.11 0.12 7.70 -2.39 -0.02 0.10 16 33 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.12 -0.03 5.93 -2.39 -0.01 -0.04 16 35 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.06 1.25 8.07 -2.39 -0.02 1.23 16 38 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 39 H 0.41 8.57 8.02 -92.71 -0.74 7.82 16 40 H 0.03 1.49 7.75 -2.38 -0.02 1.47 16 41 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.10 2.43 6.34 -2.39 -0.02 2.42 16 43 H 0.07 2.18 6.65 -2.39 -0.02 2.17 16 44 H 0.36 18.95 6.63 -92.71 -0.61 18.34 16 45 H 0.24 15.62 6.77 -92.71 -0.63 14.99 16 46 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.07 1.86 6.46 -2.39 -0.02 1.84 16 48 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.02 0.98 7.75 -2.39 -0.02 0.96 16 50 H 0.07 1.53 6.46 -2.39 -0.02 1.51 16 51 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 52 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 53 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 54 H 0.09 1.75 6.61 -2.39 -0.02 1.73 16 Total: -1.00 -83.80 418.83 2.14 -81.66 By element: Atomic # 1 Polarization: 36.08 SS G_CDS: -0.33 Total: 35.75 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 6.48 Total: -1.56 kcal Atomic # 7 Polarization: -127.72 SS G_CDS: -5.97 Total: -133.69 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -0.10 Total: -38.68 kcal Atomic # 14 Polarization: 54.46 SS G_CDS: 2.05 Total: 56.51 kcal Total: -83.80 2.14 -81.66 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485786503.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.154 kcal (2) G-P(sol) polarization free energy of solvation -83.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds