Wall clock time and date at job start Tue Mar 31 2020 23:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46493 * 2 1 4 4 C 1.52998 * 109.47324 * 65.00177 * 3 2 1 5 5 C 1.52997 * 109.47280 * 185.57145 * 4 3 2 6 6 C 1.53005 * 109.46700 * 184.99816 * 3 2 1 7 7 H 1.09004 * 109.47025 * 186.60553 * 6 3 2 8 8 C 1.52994 * 109.47436 * 306.60525 * 6 3 2 9 9 C 1.50703 * 109.46915 * 66.60691 * 6 3 2 10 10 O 1.21273 * 120.00032 * 355.16955 * 9 6 3 11 11 N 1.34785 * 119.99814 * 175.16718 * 9 6 3 12 12 C 1.46497 * 119.99809 * 179.97438 * 11 9 6 13 13 H 1.08995 * 112.90792 * 23.74960 * 12 11 9 14 14 C 1.53781 * 113.61164 * 155.00338 * 12 11 9 15 15 C 1.53784 * 87.08181 * 89.11735 * 14 12 11 16 16 H 1.09003 * 113.61311 * 270.80097 * 15 14 12 17 17 N 1.46895 * 113.61408 * 139.98123 * 15 14 12 18 18 C 1.46900 * 111.00144 * 156.52817 * 17 15 14 19 19 C 1.50697 * 109.47555 * 179.97438 * 18 17 15 20 20 O 1.21291 * 119.99715 * 0.02562 * 19 18 17 21 21 N 1.34777 * 120.00210 * 179.97438 * 19 18 17 22 22 C 1.37095 * 119.99703 * 179.97438 * 21 19 18 23 23 H 1.07999 * 120.00597 * 0.02562 * 22 21 19 24 24 C 1.38953 * 119.99813 * 179.97438 * 22 21 19 25 25 N 1.31414 * 120.00201 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99778 * 0.02562 * 24 22 21 27 27 H 1.48506 * 109.47011 * 269.99320 * 26 24 22 28 28 H 1.48497 * 109.47520 * 29.99627 * 26 24 22 29 29 H 1.48505 * 109.47033 * 149.99737 * 26 24 22 30 30 C 1.53785 * 87.17314 * 25.38673 * 15 14 12 31 31 H 1.09001 * 109.46590 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47290 * 299.99872 * 1 2 3 33 33 H 1.08999 * 109.46911 * 60.00178 * 1 2 3 34 34 H 1.08997 * 109.47290 * 240.00128 * 2 1 3 35 35 H 1.08999 * 109.46911 * 119.99821 * 2 1 3 36 36 H 1.08997 * 109.47286 * 304.99459 * 3 2 1 37 37 H 1.08994 * 109.46927 * 305.57078 * 4 3 2 38 38 H 1.09005 * 109.46987 * 65.57278 * 4 3 2 39 39 H 1.09006 * 109.47253 * 294.88392 * 5 4 3 40 40 H 1.09004 * 109.47180 * 54.87907 * 5 4 3 41 41 H 1.08995 * 109.47321 * 174.88111 * 5 4 3 42 42 H 1.08998 * 109.47853 * 180.02562 * 8 6 3 43 43 H 1.09002 * 109.47450 * 300.00031 * 8 6 3 44 44 H 1.09004 * 109.46992 * 60.00007 * 8 6 3 45 45 H 0.97005 * 119.99535 * 0.02562 * 11 9 6 46 46 H 1.08998 * 113.61261 * 334.56768 * 14 12 11 47 47 H 1.09001 * 113.68985 * 203.67419 * 14 12 11 48 48 H 1.00897 * 111.00009 * 32.57431 * 17 15 14 49 49 H 1.09005 * 109.46634 * 59.99621 * 18 17 15 50 50 H 1.09006 * 109.47021 * 300.00269 * 18 17 15 51 51 H 0.96994 * 119.99987 * 0.02562 * 21 19 18 52 52 H 0.97001 * 120.00077 * 180.02562 * 25 24 22 53 53 H 1.09007 * 113.61037 * 89.15724 * 30 15 14 54 54 H 1.08998 * 113.61563 * 220.06058 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.6351 2.1266 1.3073 5 6 2.0222 3.6057 1.2502 6 6 3.5648 1.4444 -0.1257 7 1 3.9378 2.4619 -0.0081 8 6 4.1672 0.5517 0.9610 9 6 3.9576 0.9190 -1.4824 10 8 3.1086 0.4951 -2.2376 11 7 5.2525 0.9203 -1.8566 12 6 5.6344 0.4090 -3.1752 13 1 4.8183 0.4448 -3.8968 14 6 6.9522 0.9976 -3.7060 15 6 7.6665 -0.1614 -2.9908 16 1 7.9392 0.0635 -1.9597 17 7 8.7775 -0.7338 -3.7628 18 6 9.7416 -1.4042 -2.8801 19 6 10.8641 -1.9781 -3.7057 20 8 10.8615 -1.8417 -4.9109 21 7 11.8713 -2.6421 -3.1048 22 6 12.8921 -3.1646 -3.8560 23 1 12.8895 -3.0439 -4.9293 24 6 13.9309 -3.8487 -3.2365 25 7 14.9097 -4.3491 -3.9565 26 14 13.9359 -4.0569 -1.3801 27 1 14.6480 -2.9131 -0.7557 28 1 12.5373 -4.1003 -0.8830 29 1 14.6267 -5.3229 -1.0259 30 6 6.3536 -0.9512 -3.1225 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6053 1.9815 -0.8418 37 1 0.5575 2.0381 1.4451 38 1 2.1486 1.6486 2.1416 39 1 3.1076 3.6957 1.2038 40 1 1.5816 4.0626 0.3641 41 1 1.6534 4.1125 2.1419 42 1 5.2535 0.5534 0.8718 43 1 3.8831 0.9317 1.9423 44 1 3.7942 -0.4658 0.8434 45 1 5.9315 1.2591 -1.2523 46 1 7.1900 1.9780 -3.2934 47 1 7.0418 0.9621 -4.7918 48 1 9.2306 -0.0272 -4.3227 49 1 9.2413 -2.2075 -2.3392 50 1 10.1450 -0.6835 -2.1687 51 1 11.8736 -2.7508 -2.1410 52 1 15.6347 -4.8270 -3.5240 53 1 6.2779 -1.5212 -4.0486 54 1 6.1088 -1.5417 -2.2396 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490905512.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:55 Heat of formation + Delta-G solvation = -95.258118 kcal Electronic energy + Delta-G solvation = -29563.532513 eV Core-core repulsion = 25534.158215 eV Total energy + Delta-G solvation = -4029.374299 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.54214 -40.42017 -39.76718 -37.92250 -36.16015 -35.43410 -33.92885 -33.68655 -32.57887 -32.13742 -28.64342 -27.22488 -26.68629 -26.19413 -25.32336 -23.77441 -23.49822 -22.02373 -21.30362 -20.46318 -20.14098 -19.71252 -18.22819 -17.79715 -17.18488 -17.00001 -16.59032 -16.25996 -16.12188 -15.83078 -15.75107 -15.44836 -15.12677 -14.95108 -14.90875 -14.78578 -14.41027 -14.11448 -14.02448 -13.69427 -13.36260 -13.31403 -13.21528 -13.06118 -12.95159 -12.91002 -12.70967 -12.59037 -12.44300 -12.41468 -12.17036 -11.98519 -11.87638 -11.52458 -11.49877 -11.45507 -11.37754 -11.26749 -11.06862 -10.48836 -10.41959 -10.25082 -9.98997 -9.30209 -8.41317 -6.02491 1.30422 1.35718 1.45064 1.68435 1.95867 2.19046 2.23276 2.75261 3.15204 3.42338 3.57669 3.61650 3.68689 3.83073 3.86175 3.98315 4.13939 4.16670 4.19048 4.34837 4.39716 4.43621 4.45822 4.54129 4.55703 4.57865 4.64540 4.70726 4.83648 4.86670 4.88173 4.95078 4.98802 5.03388 5.06228 5.10178 5.13391 5.16520 5.18565 5.28973 5.33265 5.35999 5.50437 5.52118 5.57186 5.64315 5.66494 5.92519 6.13959 6.42386 6.59815 6.61378 6.88061 7.33452 7.39737 7.96635 8.76354 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018974 B = 0.001784 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.380843 B =15695.415960 C =16320.313705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.064 4.064 4 C -0.119 4.119 5 C -0.155 4.155 6 C -0.102 4.102 7 H 0.117 0.883 8 C -0.146 4.146 9 C 0.514 3.486 10 O -0.576 6.576 11 N -0.701 5.701 12 C 0.125 3.875 13 H 0.085 0.915 14 C -0.134 4.134 15 C 0.064 3.936 16 H 0.095 0.905 17 N -0.677 5.677 18 C 0.063 3.937 19 C 0.447 3.553 20 O -0.615 6.615 21 N -0.591 5.591 22 C -0.330 4.330 23 H 0.054 0.946 24 C -0.016 4.016 25 N -0.935 5.935 26 Si 0.966 3.034 27 H -0.255 1.255 28 H -0.231 1.231 29 H -0.276 1.276 30 C -0.138 4.138 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.041 0.959 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.052 0.948 45 H 0.414 0.586 46 H 0.094 0.906 47 H 0.095 0.905 48 H 0.347 0.653 49 H 0.108 0.892 50 H 0.082 0.918 51 H 0.390 0.610 52 H 0.279 0.721 53 H 0.079 0.921 54 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.595 16.726 19.885 37.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.082 4.082 4 C -0.156 4.156 5 C -0.213 4.213 6 C -0.123 4.123 7 H 0.135 0.865 8 C -0.203 4.203 9 C 0.302 3.698 10 O -0.455 6.455 11 N -0.352 5.352 12 C 0.019 3.981 13 H 0.103 0.897 14 C -0.173 4.173 15 C -0.046 4.046 16 H 0.113 0.887 17 N -0.310 5.310 18 C -0.069 4.069 19 C 0.235 3.765 20 O -0.500 6.500 21 N -0.232 5.232 22 C -0.460 4.460 23 H 0.072 0.928 24 C -0.215 4.215 25 N -0.575 5.575 26 Si 0.786 3.214 27 H -0.179 1.179 28 H -0.154 1.154 29 H -0.201 1.201 30 C -0.178 4.178 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.105 0.895 44 H 0.071 0.929 45 H 0.251 0.749 46 H 0.112 0.888 47 H 0.114 0.886 48 H 0.167 0.833 49 H 0.126 0.874 50 H 0.100 0.900 51 H 0.226 0.774 52 H 0.089 0.911 53 H 0.097 0.903 54 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -27.334 15.839 18.362 36.541 hybrid contribution 1.327 0.114 0.585 1.455 sum -26.007 15.952 18.947 35.914 Atomic orbital electron populations 1.21780 0.95891 1.01348 1.01608 1.21709 0.96086 0.96746 1.01817 1.20944 0.92665 0.96311 0.98330 1.21667 1.01712 0.95756 0.96490 1.21846 1.01948 0.95780 1.01692 1.21430 0.97636 1.02304 0.90899 0.86473 1.21891 1.01193 0.99084 0.98138 1.21297 0.81888 0.77152 0.89455 1.90667 1.50831 1.48264 1.55728 1.45648 1.08417 1.63917 1.17257 1.21567 0.96410 0.94641 0.85509 0.89716 1.23485 0.93589 0.98354 1.01846 1.23212 0.89658 0.94747 0.96970 0.88705 1.60170 1.11669 1.34988 1.24146 1.21682 0.91159 1.00175 0.93933 1.21064 0.84501 0.82152 0.88812 1.90546 1.79270 1.62986 1.17192 1.42031 1.21208 1.51116 1.08881 1.19011 1.00753 1.33491 0.92705 0.92809 1.26151 0.94246 0.95524 1.05569 1.69811 1.11801 1.37010 1.38897 0.85345 0.80670 0.79135 0.76230 1.17906 1.15439 1.20139 1.23532 0.95245 0.96642 1.02386 0.93156 0.91467 0.93956 0.92882 0.91384 0.92696 0.91525 0.90511 0.91825 0.93490 0.92122 0.90965 0.89504 0.92864 0.74887 0.88772 0.88644 0.83262 0.87435 0.89991 0.77442 0.91149 0.90283 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.67 71.98 0.70 -1.43 16 2 C -0.13 -1.96 4.48 30.60 0.14 -1.82 16 3 C -0.06 -0.81 1.27 -10.79 -0.01 -0.82 16 4 C -0.12 -0.99 5.17 30.59 0.16 -0.83 16 5 C -0.16 -1.11 9.56 71.98 0.69 -0.42 16 6 C -0.10 -1.07 2.38 -11.54 -0.03 -1.10 16 7 H 0.12 0.77 6.41 -2.39 -0.02 0.76 16 8 C -0.15 -1.09 8.40 71.98 0.60 -0.49 16 9 C 0.51 8.88 6.86 87.66 0.60 9.48 16 10 O -0.58 -15.16 13.53 -3.01 -0.04 -15.20 16 11 N -0.70 -9.42 5.22 -439.76 -2.30 -11.71 16 12 C 0.13 2.21 4.33 45.58 0.20 2.41 16 13 H 0.08 1.88 7.47 -2.39 -0.02 1.87 16 14 C -0.13 -2.09 7.42 31.12 0.23 -1.86 16 15 C 0.06 1.17 3.99 45.44 0.18 1.36 16 16 H 0.10 1.30 7.88 -2.39 -0.02 1.28 16 17 N -0.68 -18.71 6.18 -492.84 -3.04 -21.75 16 18 C 0.06 1.83 6.02 85.56 0.52 2.34 16 19 C 0.45 19.92 7.82 87.66 0.69 20.61 16 20 O -0.62 -34.08 15.78 -3.06 -0.05 -34.13 16 21 N -0.59 -27.57 5.09 -306.99 -1.56 -29.14 16 22 C -0.33 -19.36 10.16 84.04 0.85 -18.51 16 23 H 0.05 3.77 7.39 -2.91 -0.02 3.75 16 24 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 25 N -0.93 -56.34 13.96 21.66 0.30 -56.04 16 26 Si 0.97 38.27 27.74 68.60 1.90 40.17 16 27 H -0.25 -9.44 7.11 99.48 0.71 -8.74 16 28 H -0.23 -7.66 6.52 99.48 0.65 -7.01 16 29 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 30 C -0.14 -2.83 7.69 31.18 0.24 -2.59 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.74 6.45 -2.39 -0.02 0.72 16 33 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.05 1.17 5.86 -2.39 -0.01 1.15 16 35 H 0.07 0.89 6.64 -2.39 -0.02 0.87 16 36 H 0.05 0.94 7.97 -2.39 -0.02 0.92 16 37 H 0.07 0.58 6.32 -2.39 -0.02 0.57 16 38 H 0.08 0.48 6.39 -2.38 -0.02 0.47 16 39 H 0.06 0.34 6.69 -2.38 -0.02 0.33 16 40 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 42 H 0.07 0.36 7.91 -2.39 -0.02 0.35 16 43 H 0.09 0.40 6.51 -2.39 -0.02 0.38 16 44 H 0.05 0.57 6.44 -2.39 -0.02 0.55 16 45 H 0.41 3.05 8.47 -92.70 -0.79 2.27 16 46 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.35 10.18 8.26 -89.70 -0.74 9.44 16 49 H 0.11 2.74 8.14 -2.38 -0.02 2.72 16 50 H 0.08 1.82 8.13 -2.38 -0.02 1.81 16 51 H 0.39 14.90 5.76 -92.71 -0.53 14.37 16 52 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 53 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 54 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -80.90 417.49 0.23 -80.67 By element: Atomic # 1 Polarization: 42.44 SS G_CDS: -1.20 Total: 41.25 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 6.22 Total: 5.88 kcal Atomic # 7 Polarization: -112.04 SS G_CDS: -6.60 Total: -118.64 kcal Atomic # 8 Polarization: -49.24 SS G_CDS: -0.09 Total: -49.33 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 1.90 Total: 40.17 kcal Total: -80.90 0.23 -80.67 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490905512.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.591 kcal (2) G-P(sol) polarization free energy of solvation -80.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds