Wall clock time and date at job start Tue Mar 31 2020 23:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47302 * 2 1 4 4 C 1.52998 * 109.46971 * 66.57810 * 3 2 1 5 5 C 1.53003 * 109.47302 * 184.42419 * 4 3 2 6 6 C 1.52995 * 109.47213 * 186.58128 * 3 2 1 7 7 H 1.09008 * 109.46815 * 183.68129 * 6 3 2 8 8 C 1.52999 * 109.47436 * 63.67766 * 6 3 2 9 9 C 1.50702 * 109.47110 * 303.67428 * 6 3 2 10 10 O 1.21280 * 119.99892 * 354.78190 * 9 6 3 11 11 N 1.34775 * 119.99995 * 174.77582 * 9 6 3 12 12 C 1.46498 * 120.00133 * 180.02562 * 11 9 6 13 13 H 1.09008 * 112.85037 * 23.80192 * 12 11 9 14 14 C 1.53775 * 113.61716 * 154.99909 * 12 11 9 15 15 C 1.53783 * 87.08014 * 89.11638 * 14 12 11 16 16 H 1.09000 * 113.61273 * 270.79923 * 15 14 12 17 17 N 1.46901 * 113.61254 * 139.97933 * 15 14 12 18 18 C 1.46904 * 110.99846 * 156.52584 * 17 15 14 19 19 C 1.50696 * 109.47190 * 180.02562 * 18 17 15 20 20 O 1.21294 * 120.00271 * 0.02562 * 19 18 17 21 21 N 1.34780 * 120.00051 * 180.02562 * 19 18 17 22 22 C 1.37095 * 120.00190 * 180.02562 * 21 19 18 23 23 H 1.08003 * 119.99869 * 359.97438 * 22 21 19 24 24 C 1.38946 * 120.00132 * 179.72803 * 22 21 19 25 25 N 1.31416 * 120.00037 * 0.27031 * 24 22 21 26 26 Si 1.86803 * 120.00223 * 180.27449 * 24 22 21 27 27 H 1.48499 * 109.47034 * 59.99814 * 26 24 22 28 28 H 1.48501 * 109.47240 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.46978 * 300.00144 * 26 24 22 30 30 C 1.53780 * 87.17271 * 25.39187 * 15 14 12 31 31 H 1.08999 * 109.46928 * 299.99662 * 1 2 3 32 32 H 1.08999 * 109.46972 * 59.99795 * 1 2 3 33 33 H 1.08997 * 109.46883 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47449 * 240.00293 * 2 1 3 35 35 H 1.09005 * 109.47367 * 120.00017 * 2 1 3 36 36 H 1.09005 * 109.46813 * 306.58147 * 3 2 1 37 37 H 1.09005 * 109.47323 * 304.42639 * 4 3 2 38 38 H 1.09000 * 109.47003 * 64.41960 * 4 3 2 39 39 H 1.08994 * 109.47203 * 184.49469 * 5 4 3 40 40 H 1.08997 * 109.46681 * 304.49464 * 5 4 3 41 41 H 1.09006 * 109.46566 * 64.49242 * 5 4 3 42 42 H 1.08997 * 109.46836 * 304.20050 * 8 6 3 43 43 H 1.09002 * 109.46746 * 64.19886 * 8 6 3 44 44 H 1.08999 * 109.47253 * 184.19595 * 8 6 3 45 45 H 0.97000 * 119.99986 * 0.02562 * 11 9 6 46 46 H 1.08998 * 113.61751 * 334.56494 * 14 12 11 47 47 H 1.09004 * 113.61912 * 203.66350 * 14 12 11 48 48 H 1.00898 * 110.99914 * 32.58174 * 17 15 14 49 49 H 1.09002 * 109.47008 * 60.00142 * 18 17 15 50 50 H 1.09003 * 109.47302 * 300.00793 * 18 17 15 51 51 H 0.97003 * 119.99610 * 0.02562 * 21 19 18 52 52 H 0.97005 * 120.00131 * 180.02562 * 25 24 22 53 53 H 1.09005 * 113.61410 * 89.15790 * 30 15 14 54 54 H 1.09004 * 113.61489 * 220.06158 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6695 2.1144 1.3236 5 6 2.0813 3.5874 1.2808 6 6 3.5611 1.4457 -0.1653 7 1 3.9315 2.4688 -0.0998 8 6 3.9271 0.8570 -1.5293 9 6 4.1866 0.6143 0.9249 10 8 3.4947 0.1509 1.8067 11 7 5.5148 0.3856 0.9200 12 6 6.1228 -0.4230 1.9795 13 1 5.4144 -1.1039 2.4516 14 6 7.4399 -1.0974 1.5608 15 6 8.1544 0.1743 2.0480 16 1 8.2587 0.9386 1.2779 17 7 9.4109 -0.0931 2.7604 18 6 10.3022 1.0737 2.7118 19 6 11.5781 0.7624 3.4507 20 8 11.7303 -0.3247 3.9668 21 7 12.5502 1.6919 3.5383 22 6 13.7111 1.4085 4.2101 23 1 13.8466 0.4405 4.6695 24 6 14.7156 2.3647 4.2955 25 7 14.5505 3.5427 3.7368 26 14 16.3006 1.9759 5.2043 27 1 16.9659 0.8130 4.5638 28 1 17.2037 3.1536 5.1507 29 1 15.9925 1.6518 6.6203 30 6 6.9531 0.4000 2.9812 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.5837 1.9892 -0.8253 37 1 0.5929 2.0426 1.4788 38 1 2.1885 1.6156 2.1421 39 1 1.8906 4.0463 2.2508 40 1 3.1433 3.6609 1.0465 41 1 1.5035 4.1040 0.5144 42 1 3.4929 -0.1383 -1.6237 43 1 3.5376 1.4997 -2.3187 44 1 5.0115 0.7902 -1.6170 45 1 6.0681 0.7565 0.2149 46 1 7.5243 -1.2613 0.4866 47 1 7.6812 -1.9850 2.1457 48 1 9.8685 -0.9131 2.3913 49 1 9.8100 1.9266 3.1792 50 1 10.5329 1.3117 1.6734 51 1 12.4283 2.5614 3.1259 52 1 15.2519 4.2102 3.7961 53 1 7.0611 -0.0775 3.9552 54 1 6.6451 1.4432 3.0520 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490905513.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:59 Heat of formation + Delta-G solvation = -94.138781 kcal Electronic energy + Delta-G solvation = -29683.045785 eV Core-core repulsion = 25653.720025 eV Total energy + Delta-G solvation = -4029.325760 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.62386 -40.35800 -39.72104 -37.50155 -36.11821 -35.41324 -34.03029 -33.24195 -32.62228 -32.25885 -28.48968 -27.15145 -26.69182 -26.25648 -25.09496 -23.70769 -23.46349 -22.05330 -21.13635 -20.59864 -20.19858 -19.87122 -17.99520 -17.61723 -17.06623 -16.85278 -16.43038 -16.26614 -16.20272 -15.76167 -15.70340 -15.41427 -15.38488 -15.24203 -14.91970 -14.46520 -14.40876 -14.08427 -13.51945 -13.40502 -13.34822 -13.27624 -13.19441 -13.08730 -12.94568 -12.87029 -12.66953 -12.54245 -12.52270 -12.42924 -12.35921 -12.12311 -11.73802 -11.68415 -11.52417 -11.48048 -11.39854 -11.06068 -11.04313 -10.33719 -10.28408 -10.01975 -9.93013 -9.30497 -8.46826 -5.95726 1.39840 1.41865 1.52736 1.71439 2.05112 2.21746 2.29282 2.96505 3.20453 3.49074 3.58380 3.65051 3.68160 3.86025 3.90109 3.99744 4.13866 4.16377 4.30361 4.33142 4.43911 4.47122 4.53044 4.54937 4.59022 4.59174 4.66890 4.71841 4.86541 4.88054 4.91987 4.94013 4.97561 4.99518 5.03753 5.10481 5.14329 5.17229 5.17838 5.26051 5.36955 5.40489 5.46044 5.48840 5.57949 5.59836 5.80131 5.93616 6.16980 6.44051 6.59981 6.63594 7.12257 7.37768 7.55953 8.11377 8.70210 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.024947 B = 0.001684 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.130057 B =16620.673733 C =17065.220889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.134 4.134 3 C -0.061 4.061 4 C -0.133 4.133 5 C -0.152 4.152 6 C -0.107 4.107 7 H 0.113 0.887 8 C -0.146 4.146 9 C 0.516 3.484 10 O -0.563 6.563 11 N -0.703 5.703 12 C 0.129 3.871 13 H 0.089 0.911 14 C -0.133 4.133 15 C 0.060 3.940 16 H 0.089 0.911 17 N -0.672 5.672 18 C 0.066 3.934 19 C 0.436 3.564 20 O -0.624 6.624 21 N -0.573 5.573 22 C -0.336 4.336 23 H 0.078 0.922 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.993 3.007 27 H -0.271 1.271 28 H -0.270 1.270 29 H -0.273 1.273 30 C -0.139 4.139 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.045 0.955 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.412 0.588 46 H 0.093 0.907 47 H 0.097 0.903 48 H 0.347 0.653 49 H 0.098 0.902 50 H 0.070 0.930 51 H 0.396 0.604 52 H 0.278 0.722 53 H 0.080 0.920 54 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.819 -0.565 -15.374 30.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C -0.080 4.080 4 C -0.170 4.170 5 C -0.209 4.209 6 C -0.127 4.127 7 H 0.131 0.869 8 C -0.203 4.203 9 C 0.304 3.696 10 O -0.442 6.442 11 N -0.355 5.355 12 C 0.022 3.978 13 H 0.107 0.893 14 C -0.171 4.171 15 C -0.049 4.049 16 H 0.106 0.894 17 N -0.305 5.305 18 C -0.066 4.066 19 C 0.224 3.776 20 O -0.511 6.511 21 N -0.210 5.210 22 C -0.466 4.466 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.817 3.183 27 H -0.196 1.196 28 H -0.194 1.194 29 H -0.199 1.199 30 C -0.178 4.178 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.101 0.899 44 H 0.089 0.911 45 H 0.249 0.751 46 H 0.111 0.889 47 H 0.116 0.884 48 H 0.167 0.833 49 H 0.116 0.884 50 H 0.088 0.912 51 H 0.230 0.770 52 H 0.087 0.913 53 H 0.099 0.901 54 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.327 -1.281 -13.812 29.758 hybrid contribution 1.473 0.480 -0.450 1.613 sum -24.854 -0.801 -14.262 28.667 Atomic orbital electron populations 1.21774 0.95759 1.01318 1.01721 1.21844 0.96081 0.96800 1.02363 1.20980 0.92519 0.96401 0.98074 1.21796 1.01128 0.95698 0.98384 1.21836 1.01457 0.96044 1.01590 1.21505 0.96772 1.00365 0.94104 0.86900 1.21891 1.02472 1.01728 0.94255 1.21173 0.81704 0.80093 0.86596 1.90594 1.61810 1.52136 1.39630 1.45707 1.08050 1.53279 1.28480 1.21548 0.93774 0.93323 0.89140 0.89303 1.23482 0.93467 0.97425 1.02751 1.23219 0.88088 0.98530 0.95081 0.89377 1.60197 1.05551 1.04992 1.59736 1.21575 0.90615 0.95364 0.99091 1.20937 0.86466 0.85067 0.85164 1.90490 1.81942 1.25748 1.52893 1.41932 1.14900 1.15175 1.48995 1.19640 0.94037 1.01014 1.31907 0.90355 1.26034 1.02368 0.94648 0.98147 1.69665 1.36168 1.05390 1.44807 0.84990 0.77003 0.77933 0.78415 1.19629 1.19430 1.19862 1.23536 0.95212 1.00419 0.98677 0.93208 0.92048 0.93214 0.91887 0.91800 0.89327 0.92235 0.92046 0.93536 0.92678 0.91778 0.92289 0.89875 0.91055 0.75127 0.88856 0.88436 0.83316 0.88415 0.91195 0.76965 0.91278 0.90121 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.70 71.98 0.70 -1.32 16 2 C -0.13 -2.07 4.80 30.60 0.15 -1.92 16 3 C -0.06 -0.80 1.61 -10.79 -0.02 -0.82 16 4 C -0.13 -2.17 5.07 30.59 0.16 -2.01 16 5 C -0.15 -2.05 9.76 71.98 0.70 -1.35 16 6 C -0.11 -1.22 2.39 -11.54 -0.03 -1.25 16 7 H 0.11 1.04 6.29 -2.38 -0.01 1.02 16 8 C -0.15 -1.07 8.94 71.98 0.64 -0.42 16 9 C 0.52 9.05 6.61 87.66 0.58 9.63 16 10 O -0.56 -14.17 11.01 -3.03 -0.03 -14.20 16 11 N -0.70 -10.24 5.11 -439.76 -2.25 -12.49 16 12 C 0.13 2.38 4.33 45.58 0.20 2.58 16 13 H 0.09 1.98 7.47 -2.38 -0.02 1.96 16 14 C -0.13 -2.23 7.42 31.12 0.23 -2.00 16 15 C 0.06 1.26 3.99 45.44 0.18 1.44 16 16 H 0.09 1.52 7.88 -2.39 -0.02 1.51 16 17 N -0.67 -20.24 6.18 -492.84 -3.04 -23.29 16 18 C 0.07 2.20 6.02 85.55 0.52 2.71 16 19 C 0.44 20.66 7.82 87.66 0.69 21.35 16 20 O -0.62 -34.64 15.78 -3.07 -0.05 -34.69 16 21 N -0.57 -29.34 5.29 -306.98 -1.62 -30.96 16 22 C -0.34 -19.15 9.68 84.04 0.81 -18.34 16 23 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 24 C -0.01 -0.65 5.50 84.92 0.47 -0.18 16 25 N -0.92 -49.38 13.05 21.66 0.28 -49.10 16 26 Si 0.99 42.86 29.55 68.60 2.03 44.88 16 27 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 28 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 29 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 30 C -0.14 -3.08 7.69 31.18 0.24 -2.84 16 31 H 0.05 0.73 6.53 -2.39 -0.02 0.71 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.06 0.87 6.15 -2.39 -0.01 0.85 16 35 H 0.06 1.39 5.59 -2.38 -0.01 1.38 16 36 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.06 0.96 6.43 -2.38 -0.02 0.94 16 38 H 0.06 1.39 5.58 -2.39 -0.01 1.37 16 39 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.05 0.70 6.27 -2.39 -0.01 0.68 16 41 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 42 H 0.06 0.54 6.20 -2.39 -0.01 0.52 16 43 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.07 0.36 7.16 -2.39 -0.02 0.34 16 45 H 0.41 3.83 7.75 -92.71 -0.72 3.11 16 46 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 48 H 0.35 10.84 8.26 -89.70 -0.74 10.10 16 49 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 50 H 0.07 1.97 8.13 -2.39 -0.02 1.95 16 51 H 0.40 19.19 7.90 -92.71 -0.73 18.46 16 52 H 0.28 13.99 8.31 -92.70 -0.77 13.22 16 53 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 54 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -70.72 417.22 0.26 -70.46 By element: Atomic # 1 Polarization: 45.39 SS G_CDS: -1.27 Total: 44.12 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 6.21 Total: 5.26 kcal Atomic # 7 Polarization: -109.21 SS G_CDS: -6.63 Total: -115.84 kcal Atomic # 8 Polarization: -48.81 SS G_CDS: -0.08 Total: -48.89 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -70.72 0.26 -70.46 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490905513.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.680 kcal (2) G-P(sol) polarization free energy of solvation -70.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds