Wall clock time and date at job start Tue Mar 31 2020 22:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53007 * 109.47288 * 2 1 4 4 C 1.52996 * 109.47118 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47387 * 59.99720 * 4 3 2 6 6 C 1.52997 * 109.47059 * 299.99410 * 4 3 2 7 7 C 1.52999 * 109.47274 * 300.00379 * 6 4 3 8 8 C 1.50708 * 109.46959 * 179.97438 * 4 3 2 9 9 O 1.21279 * 119.99590 * 359.97438 * 8 4 3 10 10 N 1.34775 * 120.00011 * 179.97438 * 8 4 3 11 11 C 1.46494 * 119.99987 * 180.02562 * 10 8 4 12 12 H 1.09000 * 112.85194 * 336.18893 * 11 10 8 13 13 C 1.53782 * 113.61661 * 107.50340 * 11 10 8 14 14 C 1.53781 * 87.08028 * 89.11591 * 13 11 10 15 15 H 1.08998 * 113.68953 * 270.86829 * 14 13 11 16 16 N 1.46905 * 113.61356 * 139.98397 * 14 13 11 17 17 C 1.46902 * 110.99800 * 107.49811 * 16 14 13 18 18 C 1.50706 * 109.46577 * 180.02562 * 17 16 14 19 19 O 1.21288 * 120.00224 * 359.72334 * 18 17 16 20 20 N 1.34777 * 119.99766 * 179.97438 * 18 17 16 21 21 C 1.37095 * 119.99970 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99992 * 0.02562 * 21 20 18 23 23 C 1.38956 * 120.00025 * 180.02562 * 21 20 18 24 24 N 1.31411 * 119.99899 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00157 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47118 * 89.99595 * 25 23 21 27 27 H 1.48499 * 109.47134 * 210.00115 * 25 23 21 28 28 H 1.48507 * 109.46904 * 329.99938 * 25 23 21 29 29 C 1.53781 * 87.08386 * 25.43172 * 14 13 11 30 30 H 1.08999 * 109.47559 * 59.99976 * 1 2 3 31 31 H 1.09001 * 109.47217 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47503 * 300.00112 * 1 2 3 33 33 H 1.08997 * 109.47503 * 239.99888 * 2 1 3 34 34 H 1.09000 * 109.47221 * 119.99608 * 2 1 3 35 35 H 1.08997 * 109.46940 * 59.99543 * 3 2 1 36 36 H 1.09000 * 109.46669 * 299.99946 * 3 2 1 37 37 H 1.09002 * 109.46788 * 180.02562 * 5 4 3 38 38 H 1.08993 * 109.47247 * 299.99799 * 5 4 3 39 39 H 1.08999 * 109.47178 * 60.00349 * 5 4 3 40 40 H 1.09007 * 109.47200 * 60.00415 * 6 4 3 41 41 H 1.08994 * 109.47445 * 180.02562 * 6 4 3 42 42 H 1.08999 * 109.47178 * 179.97438 * 7 6 4 43 43 H 1.08993 * 109.47247 * 300.00022 * 7 6 4 44 44 H 1.08999 * 109.46920 * 60.00290 * 7 6 4 45 45 H 0.97009 * 119.99988 * 359.97438 * 10 8 4 46 46 H 1.09006 * 113.61218 * 334.56338 * 13 11 10 47 47 H 1.09005 * 113.61545 * 203.66567 * 13 11 10 48 48 H 1.00898 * 110.99743 * 343.54860 * 16 14 13 49 49 H 1.09000 * 109.47263 * 60.00269 * 17 16 14 50 50 H 1.09001 * 109.47582 * 299.99548 * 17 16 14 51 51 H 0.96999 * 120.00043 * 0.02562 * 20 18 17 52 52 H 0.97005 * 120.00019 * 180.02562 * 24 23 21 53 53 H 1.09003 * 113.61071 * 89.11358 * 29 14 13 54 54 H 1.08996 * 113.61393 * 220.01664 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0794 0.7214 -1.2501 6 6 4.0804 0.7212 1.2483 7 6 3.5709 1.4423 2.4978 8 6 4.0723 2.8634 -0.0013 9 8 3.2841 3.7852 -0.0017 10 7 5.3973 3.1097 -0.0014 11 6 5.8856 4.4908 -0.0014 12 1 5.1603 5.1962 -0.4069 13 6 6.4907 4.9304 1.3423 14 6 7.8360 4.3984 0.8209 15 1 8.0073 3.3456 1.0454 16 7 8.9809 5.2498 1.1709 17 6 9.8073 4.6201 2.2094 18 6 10.9688 5.5209 2.5419 19 8 11.0985 6.5807 1.9664 20 7 11.8662 5.1466 3.4751 21 6 12.9232 5.9658 3.7773 22 1 13.0364 6.9113 3.2677 23 6 13.8488 5.5797 4.7390 24 7 13.7113 4.4290 5.3586 25 14 15.2885 6.6962 5.1512 26 1 14.9020 7.6170 6.2503 27 1 16.4470 5.8722 5.5801 28 1 15.6610 7.4872 3.9508 29 6 7.2949 4.6459 -0.5971 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 5.1695 0.7210 -1.2503 38 1 3.7162 -0.3062 -1.2501 39 1 3.7158 1.2353 -2.1399 40 1 3.7171 -0.3065 1.2484 41 1 5.1703 0.7215 1.2482 42 1 3.9342 0.9282 3.3876 43 1 3.9342 2.4699 2.4978 44 1 2.4809 1.4422 2.4982 45 1 6.0277 2.3723 -0.0007 46 1 6.1037 4.3762 2.1975 47 1 6.4774 6.0096 1.4949 48 1 8.6747 6.1669 1.4592 49 1 10.1816 3.6633 1.8453 50 1 9.2058 4.4583 3.1040 51 1 11.7648 4.2973 3.9325 52 1 14.3572 4.1596 6.0303 53 1 7.5016 5.6473 -0.9747 54 1 7.5574 3.8620 -1.3075 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490939537.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:51 Heat of formation + Delta-G solvation = -101.182976 kcal Electronic energy + Delta-G solvation = -29818.118611 eV Core-core repulsion = 25788.487391 eV Total energy + Delta-G solvation = -4029.631220 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.73787 -40.38248 -39.71712 -37.78877 -36.12883 -35.43487 -34.13444 -33.29428 -32.94387 -31.33308 -28.47051 -27.50036 -26.65123 -26.29498 -25.25197 -24.15909 -23.67281 -22.18138 -21.18713 -20.44964 -19.92323 -19.75558 -17.88775 -17.58908 -17.18859 -16.89931 -16.63270 -16.38544 -16.22138 -16.03904 -15.77966 -15.57822 -15.18156 -14.88105 -14.61337 -14.29982 -14.27491 -14.10886 -13.88490 -13.52783 -13.47823 -13.43601 -13.29925 -13.11153 -12.98285 -12.83567 -12.72946 -12.64343 -12.56649 -12.41459 -12.12152 -12.10727 -11.80907 -11.78813 -11.73004 -11.50931 -11.41188 -11.32295 -11.19927 -10.61343 -10.33136 -10.05287 -10.01365 -9.23769 -8.46809 -5.95455 1.38071 1.42081 1.54731 1.64938 2.05557 2.14605 2.29429 2.95083 3.20544 3.44089 3.59193 3.61659 3.66018 3.72210 3.87001 3.97533 4.06377 4.11146 4.24932 4.32237 4.33550 4.39246 4.51211 4.55457 4.56547 4.60621 4.68569 4.70802 4.79692 4.80551 4.85646 4.90360 4.93973 4.97026 5.02094 5.03185 5.11739 5.14392 5.14869 5.19036 5.25970 5.29679 5.40399 5.41003 5.47112 5.56466 5.60751 5.93561 6.16452 6.39530 6.56984 6.60414 7.12763 7.27600 7.56476 8.12013 8.70455 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023444 B = 0.001755 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.040195 B =15948.704487 C =16608.442800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C -0.094 4.094 4 C -0.074 4.074 5 C -0.142 4.142 6 C -0.109 4.109 7 C -0.158 4.158 8 C 0.524 3.476 9 O -0.585 6.585 10 N -0.698 5.698 11 C 0.126 3.874 12 H 0.085 0.915 13 C -0.176 4.176 14 C 0.070 3.930 15 H 0.113 0.887 16 N -0.670 5.670 17 C 0.066 3.934 18 C 0.436 3.564 19 O -0.625 6.625 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.993 3.007 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.274 1.274 29 C -0.123 4.123 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.052 0.948 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.030 0.970 44 H 0.056 0.944 45 H 0.413 0.587 46 H 0.067 0.933 47 H 0.086 0.914 48 H 0.345 0.655 49 H 0.107 0.893 50 H 0.064 0.936 51 H 0.397 0.603 52 H 0.278 0.722 53 H 0.092 0.908 54 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.135 -15.731 -9.919 29.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.132 4.132 4 C -0.077 4.077 5 C -0.200 4.200 6 C -0.147 4.147 7 C -0.216 4.216 8 C 0.312 3.688 9 O -0.465 6.465 10 N -0.350 5.350 11 C 0.019 3.981 12 H 0.103 0.897 13 C -0.217 4.217 14 C -0.040 4.040 15 H 0.131 0.869 16 N -0.301 5.301 17 C -0.067 4.067 18 C 0.223 3.777 19 O -0.511 6.511 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.199 1.199 29 C -0.161 4.161 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.117 0.883 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.049 0.951 44 H 0.075 0.925 45 H 0.250 0.750 46 H 0.086 0.914 47 H 0.104 0.896 48 H 0.165 0.835 49 H 0.125 0.875 50 H 0.082 0.918 51 H 0.231 0.769 52 H 0.087 0.913 53 H 0.110 0.890 54 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -23.066 -14.694 -10.669 29.356 hybrid contribution 0.395 0.514 1.451 1.590 sum -22.671 -14.180 -9.217 28.284 Atomic orbital electron populations 1.21779 0.95996 1.02006 1.01417 1.21651 0.95771 0.95218 1.03246 1.21430 0.92212 0.97866 1.01695 1.20901 0.97282 0.90368 0.99112 1.21951 1.02043 1.01506 0.94464 1.21678 1.01431 1.00322 0.91255 1.21864 1.01566 0.99545 0.98582 1.21144 0.81970 0.91996 0.73661 1.90675 1.56460 1.47979 1.51375 1.45619 1.07023 1.07893 1.74431 1.21565 0.95614 0.84154 0.96775 0.89674 1.24130 0.97753 1.01756 0.98025 1.23230 0.86465 0.97707 0.96572 0.86946 1.60058 1.21447 1.05774 1.42831 1.21586 0.92704 0.97288 0.95097 1.20964 0.86153 0.88528 0.82027 1.90492 1.78142 1.27293 1.55219 1.41931 1.23065 1.20555 1.35454 1.19671 1.03364 1.02541 1.20949 0.90410 1.26024 1.01248 0.98176 0.95727 1.69667 1.38333 1.21582 1.26427 0.84935 0.77215 0.77785 0.78444 1.19688 1.19466 1.19856 1.23374 0.92155 1.03873 0.96745 0.93263 0.91691 0.93405 0.90448 0.90628 0.92803 0.93209 0.90770 0.89100 0.92914 0.88340 0.90278 0.91414 0.95060 0.92487 0.74963 0.91413 0.89564 0.83536 0.87466 0.91764 0.76933 0.91286 0.88971 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 71.98 0.71 -0.84 16 2 C -0.12 -1.14 5.23 30.59 0.16 -0.98 16 3 C -0.09 -1.38 3.20 30.60 0.10 -1.28 16 4 C -0.07 -0.94 0.43 -52.93 -0.02 -0.96 16 5 C -0.14 -1.20 8.02 71.98 0.58 -0.62 16 6 C -0.11 -1.05 4.54 30.59 0.14 -0.91 16 7 C -0.16 -2.18 9.31 71.98 0.67 -1.51 16 8 C 0.52 10.27 5.22 87.66 0.46 10.72 16 9 O -0.59 -16.95 15.58 -3.03 -0.05 -17.00 16 10 N -0.70 -11.01 5.05 -440.04 -2.22 -13.23 16 11 C 0.13 2.41 4.32 45.52 0.20 2.60 16 12 H 0.09 1.99 7.46 -2.39 -0.02 1.97 16 13 C -0.18 -3.62 7.49 31.12 0.23 -3.39 16 14 C 0.07 1.46 4.06 45.44 0.18 1.65 16 15 H 0.11 1.93 7.87 -2.39 -0.02 1.91 16 16 N -0.67 -20.07 6.24 -492.83 -3.08 -23.15 16 17 C 0.07 2.15 6.01 85.56 0.51 2.67 16 18 C 0.44 20.55 7.82 87.66 0.69 21.23 16 19 O -0.62 -34.67 15.78 -3.05 -0.05 -34.72 16 20 N -0.57 -29.20 5.29 -306.98 -1.62 -30.82 16 21 C -0.34 -19.07 9.68 84.04 0.81 -18.26 16 22 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 23 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 24 N -0.92 -49.20 13.05 21.66 0.28 -48.92 16 25 Si 0.99 42.82 29.55 68.60 2.03 44.85 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 27 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 28 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 29 C -0.12 -2.26 7.63 31.12 0.24 -2.03 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.52 16 33 H 0.08 0.55 6.43 -2.39 -0.02 0.53 16 34 H 0.08 0.58 6.43 -2.39 -0.02 0.56 16 35 H 0.05 0.99 6.39 -2.39 -0.02 0.97 16 36 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 37 H 0.07 0.44 7.57 -2.39 -0.02 0.42 16 38 H 0.09 0.46 6.43 -2.39 -0.02 0.44 16 39 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.10 0.61 6.43 -2.38 -0.02 0.59 16 41 H 0.08 0.59 7.56 -2.39 -0.02 0.57 16 42 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.03 0.57 7.22 -2.39 -0.02 0.55 16 44 H 0.06 0.82 6.43 -2.39 -0.02 0.81 16 45 H 0.41 4.29 7.54 -92.70 -0.70 3.59 16 46 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 47 H 0.09 1.90 7.82 -2.38 -0.02 1.89 16 48 H 0.35 11.20 7.90 -89.70 -0.71 10.49 16 49 H 0.11 3.09 8.13 -2.39 -0.02 3.07 16 50 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 51 H 0.40 19.07 7.90 -92.71 -0.73 18.34 16 52 H 0.28 13.90 8.31 -92.70 -0.77 13.13 16 53 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 54 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -72.66 422.58 0.20 -72.46 By element: Atomic # 1 Polarization: 43.82 SS G_CDS: -1.22 Total: 42.60 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 6.12 Total: 7.93 kcal Atomic # 7 Polarization: -109.48 SS G_CDS: -6.64 Total: -116.12 kcal Atomic # 8 Polarization: -51.62 SS G_CDS: -0.10 Total: -51.72 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -72.66 0.20 -72.46 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490939537.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.723 kcal (2) G-P(sol) polarization free energy of solvation -72.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds