Wall clock time and date at job start Tue Mar 31 2020 22:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.53006 * 109.46997 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47146 * 54.99480 * 4 3 2 6 6 C 1.53005 * 109.46836 * 295.00188 * 4 3 2 7 7 C 1.50697 * 109.47301 * 175.00426 * 4 3 2 8 8 O 1.21280 * 119.99974 * 359.97438 * 7 4 3 9 9 N 1.34777 * 119.99850 * 180.02562 * 7 4 3 10 10 C 1.46499 * 119.99634 * 179.97438 * 9 7 4 11 11 C 1.53006 * 109.47048 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.49938 * 54.92615 * 11 10 9 13 13 C 1.53116 * 109.50610 * 294.80951 * 11 10 9 14 14 C 1.53114 * 109.16162 * 182.40130 * 13 11 10 15 15 C 1.53039 * 109.27834 * 57.65331 * 14 13 11 16 16 N 1.46846 * 109.52074 * 300.82165 * 15 14 13 17 17 C 1.46907 * 110.99815 * 185.83859 * 16 15 14 18 18 C 1.50707 * 109.47147 * 65.79062 * 17 16 15 19 19 O 1.21293 * 119.99694 * 359.97438 * 18 17 16 20 20 N 1.34767 * 119.99920 * 179.97438 * 18 17 16 21 21 C 1.37097 * 119.99804 * 179.97438 * 20 18 17 22 22 H 1.08002 * 120.00148 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99961 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00042 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99991 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47577 * 89.99729 * 25 23 21 27 27 H 1.48501 * 109.47103 * 209.99859 * 25 23 21 28 28 H 1.48501 * 109.47071 * 329.99153 * 25 23 21 29 29 C 1.46847 * 111.20141 * 61.74311 * 16 15 14 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 33 33 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 34 34 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 35 35 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 36 36 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 37 37 H 1.09002 * 109.47028 * 179.97438 * 6 4 3 38 38 H 1.09000 * 109.47335 * 299.99923 * 6 4 3 39 39 H 1.08996 * 109.46933 * 60.00052 * 6 4 3 40 40 H 0.96997 * 120.00076 * 0.02562 * 9 7 4 41 41 H 1.08995 * 109.47807 * 299.99895 * 10 9 7 42 42 H 1.09000 * 109.46806 * 60.00339 * 10 9 7 43 43 H 1.08998 * 109.52111 * 302.30688 * 13 11 10 44 44 H 1.09008 * 109.52418 * 62.49546 * 13 11 10 45 45 H 1.09004 * 109.50439 * 297.71358 * 14 13 11 46 46 H 1.09000 * 109.53896 * 177.61328 * 14 13 11 47 47 H 1.08997 * 109.46132 * 180.80636 * 15 14 13 48 48 H 1.09002 * 109.45062 * 60.83098 * 15 14 13 49 49 H 1.08996 * 109.47008 * 185.78497 * 17 16 15 50 50 H 1.08995 * 109.47035 * 305.79145 * 17 16 15 51 51 H 0.96998 * 120.00132 * 0.02562 * 20 18 17 52 52 H 0.96997 * 120.00088 * 179.97438 * 24 23 21 53 53 H 1.08995 * 109.46227 * 178.23913 * 29 16 15 54 54 H 1.09000 * 109.45768 * 58.26791 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9337 0.8530 -0.8409 6 6 4.0794 0.8332 1.3083 7 6 4.0723 2.8580 -0.1231 8 8 3.2842 3.7763 -0.2043 9 7 5.3974 3.1033 -0.1445 10 6 5.8857 4.4792 -0.2654 11 6 7.4158 4.4794 -0.2646 12 1 7.7801 3.8175 -1.0503 13 6 7.9264 3.9910 1.0938 14 6 9.4563 4.0511 1.1068 15 6 9.9081 5.4840 0.8162 16 7 9.3950 5.9041 -0.4940 17 6 9.9231 7.2230 -0.8680 18 6 11.4130 7.1275 -1.0742 19 8 11.9791 6.0654 -0.9239 20 7 12.1161 8.2222 -1.4256 21 6 13.4715 8.1355 -1.6126 22 1 13.9756 7.1898 -1.4788 23 6 14.1965 9.2643 -1.9744 24 7 13.5830 10.4148 -2.1377 25 14 16.0432 9.1459 -2.2300 26 1 16.3263 8.8138 -3.6493 27 1 16.6743 10.4466 -1.8906 28 1 16.5972 8.0833 -1.3529 29 6 7.9267 5.8999 -0.5155 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.6766 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 5.1694 0.8328 1.3086 38 1 3.7157 1.4227 2.1499 39 1 3.7161 -0.1906 1.3978 40 1 6.0277 2.3688 -0.0807 41 1 5.5225 4.9133 -1.1969 42 1 5.5223 5.0689 0.5763 43 1 7.5300 4.6298 1.8830 44 1 7.6008 2.9636 1.2575 45 1 9.8533 3.3823 0.3430 46 1 9.8248 3.7448 2.0858 47 1 10.9972 5.5273 0.8105 48 1 9.5221 6.1500 1.5880 49 1 9.4492 7.5556 -1.7914 50 1 9.7115 7.9379 -0.0729 51 1 11.6633 9.0717 -1.5454 52 1 14.0892 11.2029 -2.3899 53 1 7.5767 6.2452 -1.4883 54 1 7.5502 6.5640 0.2625 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491098665.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:40 Heat of formation + Delta-G solvation = -125.301837 kcal Electronic energy + Delta-G solvation = -29449.548716 eV Core-core repulsion = 25418.871624 eV Total energy + Delta-G solvation = -4030.677092 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 2.80 seconds Orbital eigenvalues (eV) -41.15839 -40.59008 -39.33451 -37.01612 -36.37990 -35.81029 -34.11155 -33.26450 -32.98064 -31.94765 -29.03085 -27.53221 -27.12644 -26.49618 -24.66571 -23.94221 -22.79426 -21.92266 -21.04252 -20.88987 -20.41678 -19.84592 -18.00597 -17.78255 -17.07592 -16.82136 -16.56205 -16.48189 -16.26649 -15.96833 -15.72228 -15.48612 -15.20146 -14.95252 -14.89036 -14.75010 -14.46808 -14.06781 -13.89997 -13.65652 -13.49719 -13.46347 -13.22881 -13.12283 -13.04656 -12.87196 -12.71530 -12.64089 -12.41049 -12.13652 -12.11829 -12.03716 -11.83388 -11.71736 -11.61839 -11.57727 -11.38883 -11.32862 -11.25624 -10.71650 -10.22516 -10.06029 -9.98560 -9.18190 -8.45663 -5.94273 1.38281 1.41849 1.54462 1.67514 2.06578 2.17413 2.30228 2.79672 3.21252 3.39527 3.67800 3.77096 3.81535 3.85403 3.90984 3.99499 4.20854 4.28847 4.32596 4.37941 4.39833 4.42663 4.43764 4.49915 4.51361 4.56267 4.62787 4.66808 4.73983 4.80426 4.82689 4.93091 4.94926 4.98609 5.04297 5.05771 5.09674 5.14685 5.19708 5.25924 5.31346 5.32209 5.41361 5.43334 5.46566 5.51850 5.54848 5.91480 6.11144 6.26677 6.58161 6.61825 7.14046 7.28385 7.57746 8.13533 8.71801 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.036579 B = 0.001589 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.287656 B =17612.338156 C =17971.731333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C -0.099 4.099 4 C -0.106 4.106 5 H 0.118 0.882 6 C -0.143 4.143 7 C 0.511 3.489 8 O -0.589 6.589 9 N -0.715 5.715 10 C 0.133 3.867 11 C -0.083 4.083 12 H 0.085 0.915 13 C -0.106 4.106 14 C -0.106 4.106 15 C 0.050 3.950 16 N -0.529 5.529 17 C 0.057 3.943 18 C 0.442 3.558 19 O -0.612 6.612 20 N -0.575 5.575 21 C -0.332 4.332 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.922 5.922 25 Si 0.992 3.008 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.272 1.272 29 C 0.061 3.939 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.087 0.913 40 H 0.414 0.586 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.086 0.914 45 H 0.060 0.940 46 H 0.076 0.924 47 H 0.059 0.941 48 H 0.027 0.973 49 H 0.109 0.891 50 H 0.063 0.937 51 H 0.395 0.605 52 H 0.277 0.723 53 H 0.083 0.917 54 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.281 -18.892 6.768 29.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.137 4.137 4 C -0.127 4.127 5 H 0.136 0.864 6 C -0.200 4.200 7 C 0.298 3.702 8 O -0.469 6.469 9 N -0.368 5.368 10 C 0.009 3.991 11 C -0.102 4.102 12 H 0.104 0.896 13 C -0.144 4.144 14 C -0.144 4.144 15 C -0.077 4.077 16 N -0.254 5.254 17 C -0.074 4.074 18 C 0.229 3.771 19 O -0.498 6.498 20 N -0.213 5.213 21 C -0.462 4.462 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.563 5.563 25 Si 0.816 3.184 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.197 1.197 29 C -0.067 4.067 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.105 0.895 40 H 0.251 0.749 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.105 0.895 45 H 0.078 0.922 46 H 0.095 0.905 47 H 0.077 0.923 48 H 0.046 0.954 49 H 0.127 0.873 50 H 0.081 0.919 51 H 0.229 0.771 52 H 0.086 0.914 53 H 0.101 0.899 54 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -22.210 -19.081 6.419 29.977 hybrid contribution 0.888 1.412 0.202 1.681 sum -21.322 -17.669 6.622 28.472 Atomic orbital electron populations 1.21788 0.95969 1.02012 1.01526 1.21579 0.95883 0.95251 1.03073 1.21395 0.92838 0.97653 1.01835 1.21386 0.97353 0.91513 1.02429 0.86446 1.21847 1.02002 1.01972 0.94194 1.21307 0.82019 0.92271 0.74558 1.90687 1.56540 1.48186 1.51537 1.45943 1.07059 1.09591 1.74162 1.21172 0.92864 0.83476 1.01599 1.21262 0.92721 0.96902 0.99284 0.89622 1.21618 0.94386 1.02336 0.96013 1.21485 0.96365 0.94874 1.01704 1.22195 1.00400 0.97192 0.87947 1.61441 1.07968 1.25699 1.30314 1.21716 0.91695 0.91404 1.02616 1.20739 0.90069 0.83988 0.82258 1.90456 1.72604 1.29740 1.56982 1.41939 1.07734 1.10321 1.61275 1.19664 0.83973 0.96785 1.45744 0.90258 1.26024 1.04715 0.94109 0.96390 1.69676 1.38454 1.00388 1.47753 0.84935 0.76908 0.77824 0.78716 1.19690 1.19620 1.19721 1.22097 0.85930 0.96783 1.01861 0.91760 0.93109 0.93341 0.90471 0.91107 0.93137 0.92887 0.90763 0.93122 0.89458 0.74853 0.92139 0.92117 0.91858 0.89526 0.92156 0.90519 0.92284 0.95449 0.87347 0.91899 0.77126 0.91368 0.89888 0.94117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.91 71.98 0.71 -0.80 16 2 C -0.12 -1.07 5.69 30.60 0.17 -0.90 16 3 C -0.10 -1.36 4.03 30.60 0.12 -1.24 16 4 C -0.11 -1.20 2.72 -11.54 -0.03 -1.23 16 5 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 6 C -0.14 -1.04 8.84 71.98 0.64 -0.41 16 7 C 0.51 9.43 7.15 87.66 0.63 10.06 16 8 O -0.59 -16.52 15.92 -3.03 -0.05 -16.57 16 9 N -0.72 -10.39 5.20 -463.06 -2.41 -12.80 16 10 C 0.13 2.35 5.07 86.38 0.44 2.78 16 11 C -0.08 -1.51 2.39 -10.74 -0.03 -1.53 16 12 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 13 C -0.11 -1.80 5.13 30.67 0.16 -1.65 16 14 C -0.11 -2.51 6.09 30.65 0.19 -2.32 16 15 C 0.05 1.59 5.11 86.33 0.44 2.03 16 16 N -0.53 -16.78 4.40 -900.93 -3.96 -20.74 16 17 C 0.06 1.99 5.45 85.56 0.47 2.46 16 18 C 0.44 21.12 7.46 87.66 0.65 21.77 16 19 O -0.61 -33.53 13.90 -3.07 -0.04 -33.57 16 20 N -0.58 -29.71 5.29 -306.98 -1.62 -31.33 16 21 C -0.33 -18.92 9.68 84.04 0.81 -18.10 16 22 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 23 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 24 N -0.92 -50.02 13.05 21.66 0.28 -49.74 16 25 Si 0.99 43.04 29.55 68.60 2.03 45.07 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 28 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 29 C 0.06 1.42 4.74 86.32 0.41 1.83 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.08 0.51 6.56 -2.39 -0.02 0.49 16 34 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.05 0.89 7.95 -2.39 -0.02 0.87 16 36 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 0.35 7.57 -2.39 -0.02 0.34 16 38 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.09 0.38 6.56 -2.39 -0.02 0.36 16 40 H 0.41 3.78 7.11 -92.71 -0.66 3.12 16 41 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.09 1.04 7.27 -2.38 -0.02 1.02 16 45 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 46 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.06 2.40 5.78 -2.39 -0.01 2.39 16 48 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.11 3.37 7.99 -2.39 -0.02 3.35 16 50 H 0.06 2.01 8.12 -2.39 -0.02 1.99 16 51 H 0.40 19.47 7.90 -92.71 -0.73 18.74 16 52 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 53 H 0.08 1.81 8.01 -2.39 -0.02 1.79 16 54 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -72.85 422.02 -0.03 -72.88 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: -0.51 Total: 34.27 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 6.25 Total: 12.54 kcal Atomic # 7 Polarization: -106.90 SS G_CDS: -7.71 Total: -114.61 kcal Atomic # 8 Polarization: -50.05 SS G_CDS: -0.09 Total: -50.14 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -72.85 -0.03 -72.88 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491098665.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.421 kcal (2) G-P(sol) polarization free energy of solvation -72.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.80 seconds