Wall clock time and date at job start Tue Mar 31 2020 22:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47305 * 2 1 4 4 C 1.52997 * 109.47086 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47375 * 305.00215 * 4 3 2 6 6 C 1.52996 * 109.46975 * 65.00585 * 4 3 2 7 7 C 1.50703 * 109.47084 * 185.00257 * 4 3 2 8 8 O 1.21278 * 119.99985 * 0.02562 * 7 4 3 9 9 N 1.34779 * 119.99944 * 180.02562 * 7 4 3 10 10 C 1.46499 * 119.99872 * 180.02562 * 9 7 4 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.50517 * 54.92126 * 11 10 9 13 13 C 1.53119 * 109.50137 * 294.79958 * 11 10 9 14 14 C 1.53126 * 109.15915 * 182.40853 * 13 11 10 15 15 C 1.53029 * 109.27776 * 57.65686 * 14 13 11 16 16 N 1.46854 * 109.52631 * 300.81940 * 15 14 13 17 17 C 1.46896 * 111.00569 * 185.84392 * 16 15 14 18 18 C 1.50704 * 109.46921 * 65.78681 * 17 16 15 19 19 O 1.21291 * 120.00482 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99588 * 180.02562 * 18 17 16 21 21 C 1.37103 * 120.00023 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99778 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00135 * 179.97438 * 21 20 18 24 24 N 1.31405 * 119.99753 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99779 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47178 * 90.00341 * 25 23 21 27 27 H 1.48502 * 109.46865 * 210.00115 * 25 23 21 28 28 H 1.48499 * 109.47314 * 330.00038 * 25 23 21 29 29 C 1.46848 * 111.19781 * 61.73985 * 16 15 14 30 30 H 1.09003 * 109.47072 * 59.99245 * 1 2 3 31 31 H 1.08993 * 109.47016 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46946 * 300.00124 * 1 2 3 33 33 H 1.09000 * 109.46692 * 240.00362 * 2 1 3 34 34 H 1.08994 * 109.46972 * 120.00551 * 2 1 3 35 35 H 1.09000 * 109.46501 * 60.00231 * 3 2 1 36 36 H 1.09004 * 109.47208 * 300.00648 * 3 2 1 37 37 H 1.09004 * 109.47368 * 299.99783 * 6 4 3 38 38 H 1.09001 * 109.47372 * 59.99628 * 6 4 3 39 39 H 1.09004 * 109.47108 * 179.97438 * 6 4 3 40 40 H 0.97000 * 119.99708 * 359.97438 * 9 7 4 41 41 H 1.09002 * 109.47391 * 59.99686 * 10 9 7 42 42 H 1.09001 * 109.46813 * 299.99742 * 10 9 7 43 43 H 1.09005 * 109.52339 * 302.31174 * 13 11 10 44 44 H 1.08999 * 109.52467 * 62.50289 * 13 11 10 45 45 H 1.09001 * 109.50293 * 297.71049 * 14 13 11 46 46 H 1.09000 * 109.53260 * 177.61442 * 14 13 11 47 47 H 1.09002 * 109.46490 * 180.80499 * 15 14 13 48 48 H 1.08997 * 109.46138 * 60.82955 * 15 14 13 49 49 H 1.08996 * 109.47026 * 185.78743 * 17 16 15 50 50 H 1.09003 * 109.47143 * 305.79063 * 17 16 15 51 51 H 0.96996 * 120.00636 * 359.97438 * 20 18 17 52 52 H 0.97008 * 119.99469 * 179.97438 * 24 23 21 53 53 H 1.08995 * 109.46182 * 178.24396 * 29 16 15 54 54 H 1.09000 * 109.45649 * 58.27588 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9338 0.8528 0.8409 6 6 4.0794 0.8331 -1.3083 7 6 4.0725 2.8578 0.1233 8 8 3.2845 3.7761 0.2046 9 7 5.3976 3.1031 0.1437 10 6 5.8860 4.4790 0.2647 11 6 7.4160 4.4790 0.2626 12 1 7.7788 3.9649 -0.6274 13 6 7.9289 3.7606 1.5138 14 6 9.4589 3.8177 1.5344 15 6 9.9105 5.2793 1.4982 16 7 9.3952 5.9223 0.2826 17 6 9.9230 7.2862 0.1442 18 6 11.4124 7.2283 -0.0781 19 8 11.9785 6.1564 -0.1178 20 7 12.1153 8.3678 -0.2327 21 6 13.4703 8.3152 -0.4355 22 1 13.9743 7.3607 -0.4708 23 6 14.1949 9.4900 -0.5955 24 7 13.5817 10.6513 -0.5519 25 14 16.0411 9.4183 -0.8710 26 1 16.3216 9.3397 -2.3271 27 1 16.6730 10.6396 -0.3103 28 1 16.5964 8.2186 -0.1945 29 6 7.9269 5.9217 0.2632 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6768 1.9562 0.8900 36 1 1.6767 1.9564 -0.8899 37 1 3.7161 -0.1906 -1.3980 38 1 3.7157 1.4227 -2.1499 39 1 5.1695 0.8335 -1.3090 40 1 6.0279 2.3686 0.0790 41 1 5.5235 4.9127 1.1967 42 1 5.5219 5.0691 -0.5764 43 1 7.5340 4.2515 2.4033 44 1 7.6034 2.7205 1.4958 45 1 9.8544 3.2929 0.6648 46 1 9.8290 3.3449 2.4441 47 1 10.9997 5.3231 1.4984 48 1 9.5261 5.8000 2.3752 49 1 9.4474 7.7752 -0.7059 50 1 9.7129 7.8510 1.0525 51 1 11.6627 9.2251 -0.2014 52 1 14.0877 11.4714 -0.6633 53 1 7.5753 6.4319 -0.6335 54 1 7.5519 6.4393 1.1461 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491098667.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:45 Heat of formation + Delta-G solvation = -125.310507 kcal Electronic energy + Delta-G solvation = -29433.455979 eV Core-core repulsion = 25402.778511 eV Total energy + Delta-G solvation = -4030.677468 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.15765 -40.59050 -39.33490 -37.01748 -36.37929 -35.81058 -34.11476 -33.26482 -32.97747 -31.94954 -29.03003 -27.52878 -27.13833 -26.49513 -24.65829 -23.94824 -22.79506 -21.92488 -21.02883 -20.87497 -20.44987 -19.84543 -17.99621 -17.77836 -17.07984 -16.70378 -16.66157 -16.50305 -16.26625 -16.04711 -15.72095 -15.32174 -15.18992 -15.04770 -14.89870 -14.76811 -14.44951 -14.07676 -13.88094 -13.65472 -13.50915 -13.45893 -13.24914 -13.12616 -13.03839 -12.87029 -12.71682 -12.64231 -12.41011 -12.12537 -12.12353 -12.04592 -11.83325 -11.71589 -11.61878 -11.58051 -11.38925 -11.32884 -11.25484 -10.71660 -10.22660 -10.06001 -9.98554 -9.18195 -8.45675 -5.94255 1.38288 1.41839 1.54478 1.67413 2.06574 2.17438 2.30244 2.79630 3.21289 3.39482 3.68035 3.76778 3.81262 3.85253 3.91179 3.99338 4.20796 4.28763 4.32733 4.37658 4.39954 4.42562 4.43784 4.49832 4.51458 4.56231 4.62320 4.66768 4.73976 4.80307 4.82547 4.92979 4.94534 4.98277 5.04636 5.05343 5.09604 5.14777 5.19555 5.25527 5.31456 5.32191 5.41354 5.43304 5.46570 5.51848 5.54784 5.91482 6.11133 6.26604 6.58144 6.61841 7.14063 7.28377 7.57757 8.13532 8.71786 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.035561 B = 0.001586 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.197849 B =17647.323872 C =17867.546995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C -0.099 4.099 4 C -0.105 4.105 5 H 0.120 0.880 6 C -0.144 4.144 7 C 0.510 3.490 8 O -0.589 6.589 9 N -0.715 5.715 10 C 0.133 3.867 11 C -0.082 4.082 12 H 0.086 0.914 13 C -0.106 4.106 14 C -0.106 4.106 15 C 0.050 3.950 16 N -0.529 5.529 17 C 0.057 3.943 18 C 0.442 3.558 19 O -0.612 6.612 20 N -0.575 5.575 21 C -0.332 4.332 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.922 5.922 25 Si 0.992 3.008 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.272 1.272 29 C 0.061 3.939 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.414 0.586 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.086 0.914 45 H 0.060 0.940 46 H 0.076 0.924 47 H 0.059 0.941 48 H 0.027 0.973 49 H 0.109 0.891 50 H 0.063 0.937 51 H 0.395 0.605 52 H 0.277 0.723 53 H 0.083 0.917 54 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.283 -19.733 2.787 29.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.137 4.137 4 C -0.126 4.126 5 H 0.138 0.862 6 C -0.201 4.201 7 C 0.298 3.702 8 O -0.469 6.469 9 N -0.368 5.368 10 C 0.009 3.991 11 C -0.102 4.102 12 H 0.104 0.896 13 C -0.144 4.144 14 C -0.144 4.144 15 C -0.077 4.077 16 N -0.254 5.254 17 C -0.074 4.074 18 C 0.229 3.771 19 O -0.498 6.498 20 N -0.213 5.213 21 C -0.462 4.462 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.563 5.563 25 Si 0.816 3.184 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.197 1.197 29 C -0.067 4.067 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.251 0.749 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.105 0.895 45 H 0.079 0.921 46 H 0.095 0.905 47 H 0.077 0.923 48 H 0.046 0.954 49 H 0.127 0.873 50 H 0.081 0.919 51 H 0.229 0.771 52 H 0.086 0.914 53 H 0.101 0.899 54 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -22.213 -19.857 2.406 29.892 hybrid contribution 0.892 1.350 0.490 1.691 sum -21.321 -18.507 2.896 28.381 Atomic orbital electron populations 1.21788 0.95976 1.02011 1.01522 1.21577 0.95876 0.95243 1.03084 1.21395 0.92833 0.97666 1.01837 1.21379 0.97344 0.91512 1.02353 0.86233 1.21852 1.01950 1.02004 0.94295 1.21312 0.82019 0.92281 0.74556 1.90686 1.56544 1.48180 1.51534 1.45945 1.07061 1.09605 1.74147 1.21173 0.92861 0.83476 1.01600 1.21260 0.92716 0.95969 1.00207 0.89610 1.21624 0.94394 1.01380 0.96993 1.21485 0.96361 0.94351 1.02235 1.22193 1.00389 0.96037 0.89108 1.61437 1.07922 1.16562 1.39503 1.21714 0.91703 0.91233 1.02776 1.20740 0.90062 0.83915 0.82334 1.90456 1.72584 1.30019 1.56717 1.41943 1.07767 1.07657 1.63912 1.19665 0.84024 0.94266 1.48217 0.90261 1.26021 1.04708 0.93989 0.96519 1.69678 1.38466 0.98005 1.50113 0.84936 0.76910 0.77892 0.78649 1.19683 1.19620 1.19723 1.22098 0.85931 0.96988 1.01652 0.93188 0.91756 0.93274 0.90564 0.90990 0.93020 0.93008 0.89390 0.93293 0.90879 0.74853 0.92079 0.92175 0.91843 0.89549 0.92147 0.90528 0.92287 0.95444 0.87343 0.91900 0.77128 0.91371 0.89891 0.94111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.91 71.98 0.71 -0.79 16 2 C -0.12 -1.07 5.69 30.60 0.17 -0.89 16 3 C -0.10 -1.36 4.03 30.59 0.12 -1.23 16 4 C -0.10 -1.19 2.72 -11.54 -0.03 -1.22 16 5 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 6 C -0.14 -1.14 8.84 71.98 0.64 -0.51 16 7 C 0.51 9.43 7.15 87.66 0.63 10.05 16 8 O -0.59 -16.51 15.92 -3.02 -0.05 -16.56 16 9 N -0.72 -10.39 5.20 -463.05 -2.41 -12.80 16 10 C 0.13 2.35 5.07 86.38 0.44 2.78 16 11 C -0.08 -1.51 2.39 -10.74 -0.03 -1.53 16 12 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 13 C -0.11 -1.82 5.13 30.68 0.16 -1.66 16 14 C -0.11 -2.51 6.09 30.65 0.19 -2.33 16 15 C 0.05 1.59 5.11 86.32 0.44 2.03 16 16 N -0.53 -16.78 4.40 -900.93 -3.96 -20.74 16 17 C 0.06 2.00 5.45 85.56 0.47 2.46 16 18 C 0.44 21.12 7.46 87.66 0.65 21.77 16 19 O -0.61 -33.52 13.90 -3.06 -0.04 -33.57 16 20 N -0.58 -29.71 5.29 -306.98 -1.62 -31.34 16 21 C -0.33 -18.92 9.68 84.04 0.81 -18.11 16 22 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 23 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 24 N -0.92 -50.01 13.05 21.66 0.28 -49.73 16 25 Si 0.99 43.04 29.55 68.60 2.03 45.07 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 28 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 29 C 0.06 1.42 4.74 86.33 0.41 1.83 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.08 0.52 6.56 -2.39 -0.02 0.50 16 34 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.05 0.89 7.95 -2.39 -0.02 0.88 16 36 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.09 0.42 6.56 -2.39 -0.02 0.41 16 38 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.07 0.42 7.56 -2.38 -0.02 0.40 16 40 H 0.41 3.78 7.10 -92.71 -0.66 3.12 16 41 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 43 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 44 H 0.09 1.04 7.26 -2.39 -0.02 1.03 16 45 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.06 2.40 5.78 -2.39 -0.01 2.39 16 48 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.11 3.37 7.99 -2.39 -0.02 3.35 16 50 H 0.06 2.01 8.12 -2.39 -0.02 1.99 16 51 H 0.40 19.47 7.90 -92.71 -0.73 18.74 16 52 H 0.28 14.08 8.31 -92.70 -0.77 13.31 16 53 H 0.08 1.81 8.01 -2.39 -0.02 1.79 16 54 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -72.83 422.00 -0.03 -72.86 By element: Atomic # 1 Polarization: 34.88 SS G_CDS: -0.51 Total: 34.37 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 6.25 Total: 12.45 kcal Atomic # 7 Polarization: -106.90 SS G_CDS: -7.71 Total: -114.61 kcal Atomic # 8 Polarization: -50.04 SS G_CDS: -0.09 Total: -50.13 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -72.83 -0.03 -72.86 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491098667.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.452 kcal (2) G-P(sol) polarization free energy of solvation -72.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds