Wall clock time and date at job start Tue Mar 31 2020 22:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.08990 * 109.47170 * 54.99895 * 4 3 2 6 6 C 1.53005 * 109.46867 * 294.99684 * 4 3 2 7 7 C 1.50700 * 109.46738 * 175.00110 * 4 3 2 8 8 O 1.21278 * 120.00548 * 359.97438 * 7 4 3 9 9 N 1.34782 * 119.99764 * 179.97438 * 7 4 3 10 10 C 1.46505 * 120.00001 * 179.97438 * 9 7 4 11 11 C 1.52997 * 109.47119 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.50679 * 305.08178 * 11 10 9 13 13 C 1.53120 * 109.50230 * 65.19564 * 11 10 9 14 14 C 1.53124 * 109.16121 * 177.59177 * 13 11 10 15 15 C 1.53034 * 109.27921 * 302.35046 * 14 13 11 16 16 N 1.46853 * 109.52538 * 59.17640 * 15 14 13 17 17 C 1.46898 * 111.00134 * 174.15707 * 16 15 14 18 18 C 1.50702 * 109.47204 * 294.21385 * 17 16 15 19 19 O 1.21288 * 120.00107 * 359.97438 * 18 17 16 20 20 N 1.34781 * 119.99522 * 179.97438 * 18 17 16 21 21 C 1.37093 * 119.99470 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00168 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99859 * 180.02562 * 21 20 18 24 24 N 1.31405 * 120.00132 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99863 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47052 * 90.00121 * 25 23 21 27 27 H 1.48504 * 109.46886 * 209.99620 * 25 23 21 28 28 H 1.48491 * 109.47411 * 329.99925 * 25 23 21 29 29 C 1.46842 * 111.19673 * 298.25962 * 16 15 14 30 30 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 32 32 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 34 34 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 35 35 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 36 36 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 37 37 H 1.09001 * 109.47099 * 60.00379 * 6 4 3 38 38 H 1.09004 * 109.46908 * 180.02562 * 6 4 3 39 39 H 1.09000 * 109.47443 * 300.00098 * 6 4 3 40 40 H 0.97002 * 119.99790 * 359.97438 * 9 7 4 41 41 H 1.08994 * 109.46912 * 300.00271 * 10 9 7 42 42 H 1.09000 * 109.46646 * 60.00028 * 10 9 7 43 43 H 1.09001 * 109.52562 * 297.50142 * 13 11 10 44 44 H 1.09001 * 109.52083 * 57.69195 * 13 11 10 45 45 H 1.08997 * 109.50422 * 182.40644 * 14 13 11 46 46 H 1.08999 * 109.52975 * 62.30893 * 14 13 11 47 47 H 1.09001 * 109.46484 * 299.16460 * 15 14 13 48 48 H 1.09003 * 109.45455 * 179.18761 * 15 14 13 49 49 H 1.09005 * 109.46718 * 54.21689 * 17 16 15 50 50 H 1.08999 * 109.47227 * 174.20794 * 17 16 15 51 51 H 0.96994 * 120.00395 * 359.97438 * 20 18 17 52 52 H 0.96998 * 120.00699 * 179.97438 * 24 23 21 53 53 H 1.09004 * 109.46134 * 301.72123 * 29 16 15 54 54 H 1.08999 * 109.45529 * 181.75173 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9329 0.8530 -0.8426 6 6 4.0805 0.8325 1.3065 7 6 4.0723 2.8578 -0.1245 8 8 3.2843 3.7761 -0.2048 9 7 5.3974 3.1031 -0.1459 10 6 5.8858 4.4790 -0.2668 11 6 7.4158 4.4791 -0.2661 12 1 7.7793 3.9646 0.6234 13 6 7.9276 3.7610 -1.5179 14 6 9.4576 3.8181 -1.5398 15 6 9.9093 5.2798 -1.5034 16 7 9.3950 5.9223 -0.2872 17 6 9.9229 7.2861 -0.1487 18 6 11.4125 7.2282 0.0723 19 8 11.9786 6.1562 0.1112 20 7 12.1155 8.3677 0.2267 21 6 13.4705 8.3149 0.4283 22 1 13.9746 7.3604 0.4629 23 6 14.1954 9.4896 0.5881 24 7 13.5820 10.6510 0.5465 25 14 16.0418 9.4178 0.8621 26 1 16.7387 9.4588 -0.4486 27 1 16.4657 10.5793 1.6846 28 1 16.3889 8.1583 1.5679 29 6 7.9267 5.9216 -0.2666 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.7171 -0.1912 1.3961 38 1 5.1705 0.8328 1.3062 39 1 3.7175 1.4219 2.1485 40 1 6.0277 2.3686 -0.0813 41 1 5.5225 4.9129 -1.1984 42 1 5.5224 5.0688 0.5747 43 1 7.6021 2.7209 -1.4999 44 1 7.5320 4.2522 -2.4069 45 1 9.8264 3.3458 -2.4503 46 1 9.8543 3.2929 -0.6710 47 1 9.5242 5.8009 -2.3799 48 1 10.9984 5.3234 -1.5044 49 1 9.7119 7.8512 -1.0567 50 1 9.4480 7.7749 0.7019 51 1 11.6629 9.2249 0.1953 52 1 14.0879 11.4710 0.6584 53 1 7.5509 6.4397 -1.1490 54 1 7.5759 6.4314 0.6307 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491098668.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:49 Heat of formation + Delta-G solvation = -125.296822 kcal Electronic energy + Delta-G solvation = -29433.428832 eV Core-core repulsion = 25402.751957 eV Total energy + Delta-G solvation = -4030.676874 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.15748 -40.59072 -39.33521 -37.01751 -36.37935 -35.81096 -34.11471 -33.26484 -32.97781 -31.94955 -29.03023 -27.52904 -27.13843 -26.49503 -24.65853 -23.94809 -22.79511 -21.92471 -21.02871 -20.87485 -20.44954 -19.84598 -17.99649 -17.77836 -17.07957 -16.70355 -16.66157 -16.50307 -16.26607 -16.04675 -15.72105 -15.32205 -15.19023 -15.04771 -14.89909 -14.76839 -14.44965 -14.07643 -13.88069 -13.65451 -13.50897 -13.45863 -13.24944 -13.12637 -13.03832 -12.87063 -12.71750 -12.64177 -12.41107 -12.12522 -12.12364 -12.04554 -11.83305 -11.71587 -11.61874 -11.57887 -11.38911 -11.33038 -11.25454 -10.71689 -10.22635 -10.06000 -9.98551 -9.18177 -8.45607 -5.94216 1.38179 1.41841 1.54611 1.67400 2.06561 2.17426 2.30253 2.79679 3.21258 3.39540 3.68050 3.76784 3.81269 3.85268 3.91190 3.99308 4.20829 4.28780 4.32729 4.37648 4.39919 4.42568 4.43802 4.49829 4.51473 4.56243 4.62333 4.66767 4.73980 4.80324 4.82569 4.92991 4.94566 4.98266 5.04633 5.05335 5.09616 5.14784 5.19562 5.25518 5.31457 5.32208 5.41371 5.43312 5.46572 5.51856 5.54782 5.91488 6.11141 6.26644 6.58131 6.61889 7.14086 7.28366 7.57774 8.13554 8.71860 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.035560 B = 0.001586 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.202876 B =17647.256605 C =17867.517418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C -0.099 4.099 4 C -0.105 4.105 5 H 0.120 0.880 6 C -0.144 4.144 7 C 0.510 3.490 8 O -0.589 6.589 9 N -0.715 5.715 10 C 0.134 3.866 11 C -0.082 4.082 12 H 0.086 0.914 13 C -0.106 4.106 14 C -0.106 4.106 15 C 0.050 3.950 16 N -0.529 5.529 17 C 0.057 3.943 18 C 0.442 3.558 19 O -0.612 6.612 20 N -0.575 5.575 21 C -0.332 4.332 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.922 5.922 25 Si 0.992 3.008 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.273 1.273 29 C 0.061 3.939 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.048 0.952 40 H 0.414 0.586 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.086 0.914 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.060 0.940 47 H 0.027 0.973 48 H 0.059 0.941 49 H 0.063 0.937 50 H 0.108 0.892 51 H 0.395 0.605 52 H 0.277 0.723 53 H 0.041 0.959 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.283 -19.731 -2.788 29.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.137 4.137 4 C -0.126 4.126 5 H 0.138 0.862 6 C -0.201 4.201 7 C 0.298 3.702 8 O -0.469 6.469 9 N -0.368 5.368 10 C 0.009 3.991 11 C -0.102 4.102 12 H 0.104 0.896 13 C -0.144 4.144 14 C -0.144 4.144 15 C -0.077 4.077 16 N -0.254 5.254 17 C -0.074 4.074 18 C 0.230 3.770 19 O -0.498 6.498 20 N -0.213 5.213 21 C -0.462 4.462 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.563 5.563 25 Si 0.816 3.184 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.197 1.197 29 C -0.067 4.067 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.251 0.749 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.104 0.896 44 H 0.082 0.918 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.046 0.954 48 H 0.077 0.923 49 H 0.081 0.919 50 H 0.127 0.873 51 H 0.229 0.771 52 H 0.086 0.914 53 H 0.059 0.941 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.214 -19.856 -2.397 29.891 hybrid contribution 0.894 1.351 -0.506 1.697 sum -21.321 -18.505 -2.903 28.380 Atomic orbital electron populations 1.21786 0.95977 1.02013 1.01522 1.21575 0.95876 0.95243 1.03085 1.21395 0.92832 0.97665 1.01837 1.21379 0.97343 0.91509 1.02357 0.86232 1.21853 1.01943 1.02001 0.94303 1.21312 0.82018 0.92282 0.74555 1.90686 1.56545 1.48172 1.51539 1.45948 1.07062 1.09605 1.74148 1.21171 0.92862 0.83474 1.01600 1.21258 0.92718 0.95971 1.00205 0.89613 1.21624 0.94400 1.01380 0.96987 1.21484 0.96358 0.94354 1.02234 1.22195 1.00399 0.96037 0.89099 1.61436 1.07943 1.16582 1.39463 1.21714 0.91701 0.91232 1.02781 1.20739 0.90064 0.83916 0.82330 1.90455 1.72597 1.30013 1.56707 1.41941 1.07753 1.07657 1.63926 1.19662 0.84008 0.94269 1.48230 0.90259 1.26021 1.04703 0.93989 0.96519 1.69671 1.38436 0.98010 1.50154 0.84937 0.76986 0.77960 0.78512 1.19663 1.19623 1.19742 1.22097 0.85932 0.96987 1.01653 0.93181 0.93281 0.91757 0.90991 0.90564 0.93001 0.93025 0.89389 0.90881 0.93291 0.74854 0.92078 0.92177 0.89550 0.91843 0.90528 0.92147 0.95442 0.92277 0.91898 0.87348 0.77127 0.91366 0.94110 0.89895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.91 71.98 0.71 -0.79 16 2 C -0.12 -1.07 5.69 30.59 0.17 -0.89 16 3 C -0.10 -1.36 4.03 30.59 0.12 -1.23 16 4 C -0.10 -1.19 2.73 -11.54 -0.03 -1.22 16 5 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 6 C -0.14 -1.14 8.84 71.98 0.64 -0.51 16 7 C 0.51 9.43 7.15 87.66 0.63 10.05 16 8 O -0.59 -16.51 15.92 -3.02 -0.05 -16.56 16 9 N -0.72 -10.40 5.20 -463.06 -2.41 -12.81 16 10 C 0.13 2.35 5.07 86.38 0.44 2.78 16 11 C -0.08 -1.51 2.39 -10.74 -0.03 -1.53 16 12 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 13 C -0.11 -1.82 5.13 30.68 0.16 -1.66 16 14 C -0.11 -2.51 6.09 30.65 0.19 -2.32 16 15 C 0.05 1.59 5.11 86.32 0.44 2.03 16 16 N -0.53 -16.78 4.40 -900.92 -3.96 -20.74 16 17 C 0.06 2.00 5.45 85.56 0.47 2.46 16 18 C 0.44 21.12 7.46 87.66 0.65 21.77 16 19 O -0.61 -33.52 13.90 -3.06 -0.04 -33.56 16 20 N -0.58 -29.71 5.29 -306.98 -1.62 -31.33 16 21 C -0.33 -18.92 9.68 84.04 0.81 -18.10 16 22 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 24 N -0.92 -50.02 13.05 21.66 0.28 -49.73 16 25 Si 0.99 43.04 29.55 68.60 2.03 45.06 16 26 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 28 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 29 C 0.06 1.42 4.74 86.33 0.41 1.83 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.08 0.52 6.57 -2.39 -0.02 0.50 16 35 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.05 0.89 7.95 -2.39 -0.02 0.87 16 37 H 0.09 0.42 6.57 -2.39 -0.02 0.41 16 38 H 0.07 0.42 7.56 -2.38 -0.02 0.40 16 39 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.41 3.78 7.10 -92.71 -0.66 3.13 16 41 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.09 1.04 7.27 -2.39 -0.02 1.03 16 44 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.06 2.40 5.78 -2.39 -0.01 2.39 16 49 H 0.06 2.01 8.12 -2.38 -0.02 1.99 16 50 H 0.11 3.37 7.99 -2.39 -0.02 3.35 16 51 H 0.40 19.47 7.90 -92.71 -0.73 18.74 16 52 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 53 H 0.04 0.89 8.14 -2.38 -0.02 0.88 16 54 H 0.08 1.81 8.02 -2.39 -0.02 1.79 16 Total: -1.00 -72.82 422.00 -0.03 -72.85 By element: Atomic # 1 Polarization: 34.88 SS G_CDS: -0.51 Total: 34.37 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 6.25 Total: 12.45 kcal Atomic # 7 Polarization: -106.91 SS G_CDS: -7.71 Total: -114.62 kcal Atomic # 8 Polarization: -50.03 SS G_CDS: -0.09 Total: -50.12 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -72.82 -0.03 -72.85 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491098668.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.442 kcal (2) G-P(sol) polarization free energy of solvation -72.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds