Wall clock time and date at job start Tue Mar 31 2020 22:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47122 * 2 1 4 4 C 1.52997 * 109.47283 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47278 * 304.99782 * 4 3 2 6 6 C 1.53003 * 109.47120 * 64.99420 * 4 3 2 7 7 C 1.50701 * 109.47187 * 184.99678 * 4 3 2 8 8 O 1.21279 * 119.99911 * 0.02562 * 7 4 3 9 9 N 1.34775 * 119.99754 * 179.97438 * 7 4 3 10 10 C 1.46502 * 119.99906 * 179.97438 * 9 7 4 11 11 C 1.53002 * 109.47324 * 184.98266 * 10 9 7 12 12 H 1.08999 * 109.45232 * 185.73490 * 11 10 9 13 13 C 1.53035 * 109.45731 * 65.76302 * 11 10 9 14 14 C 1.53120 * 109.27449 * 180.80363 * 13 11 10 15 15 C 1.53118 * 109.16248 * 57.65663 * 14 13 11 16 16 C 1.53038 * 109.27970 * 302.34707 * 15 14 13 17 17 N 1.46845 * 109.46259 * 305.71367 * 11 10 9 18 18 C 1.46907 * 110.99834 * 305.85281 * 17 11 10 19 19 C 1.50695 * 109.46942 * 299.55750 * 18 17 11 20 20 O 1.21300 * 120.00258 * 0.02562 * 19 18 17 21 21 N 1.34774 * 120.00074 * 180.02562 * 19 18 17 22 22 C 1.37100 * 120.00311 * 179.97438 * 21 19 18 23 23 H 1.07995 * 120.00107 * 359.97438 * 22 21 19 24 24 C 1.38953 * 120.00146 * 180.27591 * 22 21 19 25 25 N 1.31413 * 119.99985 * 359.72005 * 24 22 21 26 26 Si 1.86793 * 120.00047 * 179.72681 * 24 22 21 27 27 H 1.48497 * 109.47485 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47524 * 119.99938 * 26 24 22 29 29 H 1.48502 * 109.47247 * 239.99638 * 26 24 22 30 30 H 1.08998 * 109.46945 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46664 * 300.00038 * 1 2 3 32 32 H 1.08997 * 109.47207 * 59.99874 * 1 2 3 33 33 H 1.08994 * 109.47052 * 239.99327 * 2 1 3 34 34 H 1.09000 * 109.47177 * 119.99595 * 2 1 3 35 35 H 1.08998 * 109.47220 * 59.99739 * 3 2 1 36 36 H 1.09000 * 109.46764 * 299.99848 * 3 2 1 37 37 H 1.09000 * 109.47276 * 179.97438 * 6 4 3 38 38 H 1.08996 * 109.47438 * 300.00123 * 6 4 3 39 39 H 1.09005 * 109.46885 * 60.00463 * 6 4 3 40 40 H 0.96998 * 120.00284 * 359.97438 * 9 7 4 41 41 H 1.08998 * 109.46986 * 64.98432 * 10 9 7 42 42 H 1.08997 * 109.47320 * 304.98648 * 10 9 7 43 43 H 1.09001 * 109.50683 * 60.86889 * 13 11 10 44 44 H 1.08997 * 109.53845 * 300.76356 * 13 11 10 45 45 H 1.08996 * 109.52764 * 297.75225 * 14 13 11 46 46 H 1.09004 * 109.52498 * 177.56076 * 14 13 11 47 47 H 1.08997 * 109.50563 * 182.39986 * 15 14 13 48 48 H 1.09007 * 109.53552 * 62.30167 * 15 14 13 49 49 H 1.09004 * 109.45917 * 299.16291 * 16 15 14 50 50 H 1.08995 * 109.45537 * 179.18897 * 16 15 14 51 51 H 1.08999 * 109.47138 * 179.55822 * 18 17 11 52 52 H 1.09003 * 109.46934 * 59.55641 * 18 17 11 53 53 H 0.97000 * 120.00350 * 359.97438 * 21 19 18 54 54 H 0.96995 * 119.99803 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0795 0.8330 -1.3083 7 6 4.0724 2.8580 0.1231 8 8 3.2843 3.7762 0.2043 9 7 5.3975 3.1032 0.1445 10 6 5.8859 4.4792 0.2643 11 6 7.4108 4.4919 0.1397 12 1 7.7822 5.4988 0.3300 13 6 7.8105 4.0592 -1.2727 14 6 9.3374 4.0540 -1.3866 15 6 9.9175 3.1168 -0.3238 16 6 9.4566 3.5767 1.0612 17 7 7.9894 3.5636 1.1195 18 6 7.5137 3.8662 2.4761 19 6 7.9228 5.2673 2.8510 20 8 8.5486 5.9471 2.0652 21 7 7.5933 5.7649 4.0593 22 6 7.9660 7.0394 4.4006 23 1 8.5239 7.6445 3.7014 24 6 7.6312 7.5505 5.6487 25 7 6.9527 6.8142 6.4998 26 14 8.1455 9.2842 6.1165 27 1 8.8944 9.8991 4.9913 28 1 6.9377 10.0966 6.4105 29 1 9.0139 9.2351 7.3202 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 5.1695 0.8334 -1.3089 38 1 3.7162 -0.1907 -1.3978 39 1 3.7158 1.4226 -2.1499 40 1 6.0278 2.3687 0.0807 41 1 5.5972 4.8841 1.2342 42 1 5.4516 5.0892 -0.5278 43 1 7.3938 4.7573 -1.9988 44 1 7.4275 3.0579 -1.4693 45 1 9.7180 5.0632 -1.2291 46 1 9.6276 3.7049 -2.3776 47 1 11.0062 3.1415 -0.3719 48 1 9.5682 2.1002 -0.5045 49 1 9.8185 4.5879 1.2471 50 1 9.8563 2.9029 1.8190 51 1 7.9514 3.1591 3.1807 52 1 6.4272 3.7844 2.5068 53 1 7.0926 5.2215 4.6876 54 1 6.7194 7.1708 7.3711 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491205769.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:20 Heat of formation + Delta-G solvation = -119.021199 kcal Electronic energy + Delta-G solvation = -31337.780643 eV Core-core repulsion = 27307.375900 eV Total energy + Delta-G solvation = -4030.404743 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.55818 -40.63848 -39.01199 -36.90375 -36.04860 -35.75149 -34.26421 -33.30779 -33.08903 -31.73513 -28.99024 -27.62082 -27.35768 -26.38111 -24.66345 -23.98085 -22.52567 -21.98538 -21.22854 -20.72876 -20.45289 -19.73904 -18.05507 -17.71485 -17.27088 -16.90471 -16.59213 -16.38832 -16.35219 -15.71196 -15.65928 -15.59530 -15.15127 -15.06326 -14.81675 -14.61587 -14.39483 -14.04037 -13.94772 -13.53131 -13.49716 -13.34426 -13.09503 -13.08329 -13.02071 -12.82487 -12.68048 -12.58876 -12.46459 -12.17039 -12.08966 -12.01657 -11.81076 -11.67043 -11.55663 -11.40313 -11.36377 -11.26999 -11.14704 -10.97182 -10.66458 -10.02848 -9.99701 -9.04857 -8.49998 -5.99947 1.30832 1.36663 1.50308 1.72964 1.96900 2.24978 2.29316 2.93546 3.15863 3.22879 3.72738 3.79615 3.85075 3.89292 4.02684 4.04129 4.22554 4.32335 4.34752 4.36775 4.42381 4.46107 4.47939 4.54670 4.59429 4.66389 4.71012 4.79022 4.85724 4.86104 4.95104 4.96272 5.02444 5.05075 5.08221 5.15557 5.17447 5.18562 5.28816 5.30665 5.31695 5.34759 5.36299 5.47808 5.50757 5.56349 5.59277 5.88213 6.04060 6.11130 6.53847 6.70402 7.07641 7.37206 7.50901 8.05039 8.65684 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009681 B = 0.003148 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2891.551473 B = 8892.331838 C =11054.568322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.099 4.099 4 C -0.103 4.103 5 H 0.116 0.884 6 C -0.139 4.139 7 C 0.505 3.495 8 O -0.597 6.597 9 N -0.697 5.697 10 C 0.136 3.864 11 C 0.060 3.940 12 H 0.057 0.943 13 C -0.099 4.099 14 C -0.118 4.118 15 C -0.103 4.103 16 C 0.038 3.962 17 N -0.484 5.484 18 C 0.047 3.953 19 C 0.409 3.591 20 O -0.618 6.618 21 N -0.571 5.571 22 C -0.331 4.331 23 H 0.078 0.922 24 C -0.014 4.014 25 N -0.919 5.919 26 Si 0.991 3.009 27 H -0.274 1.274 28 H -0.273 1.273 29 H -0.269 1.269 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.044 0.956 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.050 0.950 40 H 0.419 0.581 41 H 0.031 0.969 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.037 0.963 46 H 0.085 0.915 47 H 0.072 0.928 48 H 0.086 0.914 49 H 0.029 0.971 50 H 0.074 0.926 51 H 0.110 0.890 52 H 0.097 0.903 53 H 0.394 0.606 54 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.285 -18.501 -15.072 24.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.137 4.137 4 C -0.124 4.124 5 H 0.134 0.866 6 C -0.196 4.196 7 C 0.293 3.707 8 O -0.478 6.478 9 N -0.350 5.350 10 C 0.011 3.989 11 C -0.049 4.049 12 H 0.075 0.925 13 C -0.136 4.136 14 C -0.156 4.156 15 C -0.141 4.141 16 C -0.090 4.090 17 N -0.207 5.207 18 C -0.085 4.085 19 C 0.196 3.804 20 O -0.506 6.506 21 N -0.207 5.207 22 C -0.460 4.460 23 H 0.096 0.904 24 C -0.214 4.214 25 N -0.560 5.560 26 Si 0.815 3.185 27 H -0.198 1.198 28 H -0.198 1.198 29 H -0.194 1.194 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.069 0.931 40 H 0.258 0.742 41 H 0.049 0.951 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.105 0.895 45 H 0.056 0.944 46 H 0.104 0.896 47 H 0.090 0.910 48 H 0.105 0.895 49 H 0.048 0.952 50 H 0.092 0.908 51 H 0.128 0.872 52 H 0.115 0.885 53 H 0.227 0.773 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.618 -17.845 -15.471 23.894 hybrid contribution 0.351 1.977 1.450 2.477 sum -3.267 -15.869 -14.021 21.426 Atomic orbital electron populations 1.21790 0.95965 1.02077 1.01436 1.21572 0.95869 0.94981 1.03204 1.21394 0.92884 0.97841 1.01614 1.21366 0.97252 0.91080 1.02684 0.86595 1.21826 1.02008 1.01949 0.93865 1.21485 0.82043 0.92482 0.74671 1.90684 1.56704 1.48445 1.51967 1.45803 1.06857 1.08952 1.73405 1.21142 0.93526 0.84385 0.99886 1.22083 0.91753 0.97048 0.94017 0.92531 1.21545 0.96403 1.02533 0.93154 1.21552 0.95032 0.99108 0.99873 1.21515 1.00184 1.00098 0.92280 1.22299 0.87073 1.00390 0.99201 1.62533 1.08509 1.47781 1.01911 1.22144 1.02135 0.91516 0.92741 1.22101 0.84212 0.91577 0.82507 1.90411 1.46152 1.62982 1.51039 1.42156 1.49497 1.14228 1.14866 1.19661 1.34445 0.91647 1.00295 0.90397 1.26046 0.96460 1.03613 0.95240 1.69679 1.38963 1.38873 1.08468 0.84904 0.78211 0.77236 0.78195 1.19834 1.19813 1.19398 0.91497 0.93638 0.93045 0.90079 0.91149 0.93700 0.92856 0.90771 0.89136 0.93084 0.74211 0.95058 0.92087 0.91644 0.89507 0.94427 0.89605 0.90977 0.89508 0.95231 0.90783 0.87152 0.88534 0.77278 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.91 71.98 0.71 -1.41 16 2 C -0.12 -1.57 5.69 30.60 0.17 -1.39 16 3 C -0.10 -1.92 4.03 30.59 0.12 -1.80 16 4 C -0.10 -1.80 2.72 -11.54 -0.03 -1.83 16 5 H 0.12 1.62 8.14 -2.39 -0.02 1.61 16 6 C -0.14 -1.64 8.85 71.98 0.64 -1.00 16 7 C 0.51 13.52 7.15 87.66 0.63 14.15 16 8 O -0.60 -22.24 15.92 -3.03 -0.05 -22.29 16 9 N -0.70 -16.83 4.87 -463.06 -2.25 -19.09 16 10 C 0.14 4.24 4.55 86.38 0.39 4.63 16 11 C 0.06 1.81 1.66 44.94 0.07 1.88 16 12 H 0.06 2.30 5.54 -2.39 -0.01 2.28 16 13 C -0.10 -2.22 5.26 30.65 0.16 -2.06 16 14 C -0.12 -2.56 6.00 30.67 0.18 -2.38 16 15 C -0.10 -2.17 6.09 30.65 0.19 -1.98 16 16 C 0.04 1.10 5.06 86.33 0.44 1.54 16 17 N -0.48 -13.79 4.03 -875.64 -3.53 -17.32 16 18 C 0.05 1.56 5.34 85.55 0.46 2.02 16 19 C 0.41 18.84 7.14 87.66 0.63 19.46 16 20 O -0.62 -31.94 11.19 -3.09 -0.03 -31.98 16 21 N -0.57 -29.44 5.29 -306.99 -1.62 -31.06 16 22 C -0.33 -18.88 9.68 84.04 0.81 -18.07 16 23 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 24 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 25 N -0.92 -50.50 13.05 21.66 0.28 -50.22 16 26 Si 0.99 43.74 29.55 68.60 2.03 45.77 16 27 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 28 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 29 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.08 0.81 6.56 -2.39 -0.02 0.79 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.04 1.09 7.95 -2.39 -0.02 1.07 16 36 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.07 0.70 7.57 -2.39 -0.02 0.68 16 38 H 0.09 0.70 6.56 -2.39 -0.02 0.69 16 39 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 40 H 0.42 7.90 6.86 -92.71 -0.64 7.27 16 41 H 0.03 1.20 6.62 -2.39 -0.02 1.18 16 42 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.09 1.57 7.33 -2.39 -0.02 1.55 16 45 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 47 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 49 H 0.03 1.13 5.81 -2.38 -0.01 1.12 16 50 H 0.07 1.98 8.09 -2.39 -0.02 1.96 16 51 H 0.11 3.27 8.10 -2.39 -0.02 3.25 16 52 H 0.10 3.20 6.23 -2.39 -0.01 3.18 16 53 H 0.39 19.67 7.90 -92.71 -0.73 18.94 16 54 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -70.96 412.30 0.39 -70.57 By element: Atomic # 1 Polarization: 44.58 SS G_CDS: -0.47 Total: 44.11 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 6.04 Total: 11.50 kcal Atomic # 7 Polarization: -110.56 SS G_CDS: -7.13 Total: -117.68 kcal Atomic # 8 Polarization: -54.18 SS G_CDS: -0.08 Total: -54.26 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -70.96 0.39 -70.57 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491205769.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.450 kcal (2) G-P(sol) polarization free energy of solvation -70.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds