Wall clock time and date at job start Tue Mar 31 2020 22:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47405 * 2 1 4 4 C 1.52993 * 109.47494 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47637 * 54.99251 * 4 3 2 6 6 C 1.53002 * 109.46770 * 294.99734 * 4 3 2 7 7 C 1.50698 * 109.47365 * 174.99865 * 4 3 2 8 8 O 1.21286 * 119.99984 * 359.97438 * 7 4 3 9 9 N 1.34772 * 120.00131 * 179.97438 * 7 4 3 10 10 C 1.46505 * 119.99978 * 179.97438 * 9 7 4 11 11 C 1.53003 * 109.46831 * 174.96127 * 10 9 7 12 12 H 1.09007 * 109.45879 * 174.44885 * 11 10 9 13 13 C 1.53036 * 109.46490 * 294.43066 * 11 10 9 14 14 C 1.53125 * 109.27484 * 179.19769 * 13 11 10 15 15 C 1.53118 * 109.16105 * 302.34139 * 14 13 11 16 16 C 1.53034 * 109.27663 * 57.65949 * 15 14 13 17 17 N 1.46846 * 109.46088 * 54.47626 * 11 10 9 18 18 C 1.46894 * 111.00097 * 54.14126 * 17 11 10 19 19 C 1.50702 * 109.47499 * 64.71425 * 18 17 11 20 20 O 1.21291 * 119.99549 * 354.68505 * 19 18 17 21 21 N 1.34772 * 120.00209 * 174.69032 * 19 18 17 22 22 C 1.37098 * 120.00126 * 180.02562 * 21 19 18 23 23 H 1.08001 * 119.99721 * 359.97438 * 22 21 19 24 24 C 1.38947 * 120.00109 * 179.97438 * 22 21 19 25 25 N 1.31405 * 120.00192 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99804 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46941 * 60.00332 * 26 24 22 28 28 H 1.48506 * 109.46737 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47122 * 300.00099 * 26 24 22 30 30 H 1.09007 * 109.47388 * 300.00114 * 1 2 3 31 31 H 1.08998 * 109.47442 * 59.99945 * 1 2 3 32 32 H 1.08998 * 109.47289 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47388 * 239.99886 * 2 1 3 34 34 H 1.08998 * 109.47442 * 120.00054 * 2 1 3 35 35 H 1.09000 * 109.47240 * 59.99404 * 3 2 1 36 36 H 1.09006 * 109.46876 * 300.00088 * 3 2 1 37 37 H 1.09001 * 109.47103 * 180.02562 * 6 4 3 38 38 H 1.08999 * 109.47553 * 300.00086 * 6 4 3 39 39 H 1.09004 * 109.47330 * 60.00247 * 6 4 3 40 40 H 0.97005 * 120.00421 * 359.72613 * 9 7 4 41 41 H 1.08992 * 109.47461 * 294.96507 * 10 9 7 42 42 H 1.08996 * 109.46936 * 54.96879 * 10 9 7 43 43 H 1.08998 * 109.50123 * 299.13560 * 13 11 10 44 44 H 1.08992 * 109.50307 * 59.21975 * 13 11 10 45 45 H 1.08998 * 109.52159 * 62.25325 * 14 13 11 46 46 H 1.09005 * 109.51813 * 182.37675 * 14 13 11 47 47 H 1.08997 * 109.50556 * 177.59486 * 15 14 13 48 48 H 1.08994 * 109.50700 * 297.67880 * 15 14 13 49 49 H 1.08999 * 109.46650 * 60.83187 * 16 15 14 50 50 H 1.08996 * 109.46540 * 180.81207 * 16 15 14 51 51 H 1.09003 * 109.47314 * 184.71137 * 18 17 11 52 52 H 1.08997 * 109.47215 * 304.70931 * 18 17 11 53 53 H 0.96997 * 120.00248 * 359.97438 * 21 19 18 54 54 H 0.97003 * 120.00705 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8426 6 6 4.0804 0.8327 1.3065 7 6 4.0722 2.8579 -0.1245 8 8 3.2841 3.7763 -0.2049 9 7 5.3973 3.1033 -0.1460 10 6 5.8856 4.4793 -0.2670 11 6 7.4103 4.4922 -0.1408 12 1 7.7817 5.4997 -0.3287 13 6 7.8089 4.0568 1.2712 14 6 9.3358 4.0520 1.3865 15 6 9.9173 3.1172 0.3223 16 6 9.4576 3.5799 -1.0621 17 7 7.9903 3.5661 -1.1218 18 6 7.5159 3.8711 -2.4782 19 6 8.0138 5.2325 -2.8904 20 8 8.6144 5.9246 -2.0958 21 7 7.7917 5.6809 -4.1417 22 6 8.2451 6.9191 -4.5169 23 1 8.7800 7.5354 -3.8094 24 6 8.0165 7.3812 -5.8072 25 7 7.3662 6.6311 -6.6681 26 14 8.6338 9.0687 -6.3180 27 1 10.1110 9.1195 -6.1752 28 1 8.2637 9.3234 -7.7334 29 1 8.0167 10.1047 -5.4513 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 5.1704 0.8332 1.3063 38 1 3.7174 1.4220 2.1485 39 1 3.7171 -0.1911 1.3961 40 1 6.0277 2.3692 -0.0777 41 1 5.5978 4.8829 -1.2376 42 1 5.4504 5.0900 0.5240 43 1 7.3912 4.7532 1.9982 44 1 7.4256 3.0550 1.4648 45 1 9.7159 5.0617 1.2315 46 1 9.6251 3.7019 2.3775 47 1 11.0058 3.1423 0.3714 48 1 9.5683 2.1003 0.5012 49 1 9.8191 4.5916 -1.2456 50 1 9.8580 2.9079 -1.8212 51 1 7.8936 3.1206 -3.1726 52 1 6.4260 3.8632 -2.4923 53 1 7.3116 5.1272 -4.7773 54 1 7.2062 6.9538 -7.5688 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491205770.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:24 Heat of formation + Delta-G solvation = -118.762824 kcal Electronic energy + Delta-G solvation = -31280.930649 eV Core-core repulsion = 27250.537110 eV Total energy + Delta-G solvation = -4030.393539 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -41.54922 -40.63873 -39.02146 -36.90193 -36.05123 -35.74652 -34.26527 -33.30609 -33.08777 -31.73598 -28.98702 -27.61889 -27.35460 -26.38906 -24.66325 -23.98980 -22.51427 -21.98364 -21.22759 -20.72353 -20.44891 -19.73714 -18.05162 -17.71450 -17.27715 -16.90373 -16.58346 -16.38612 -16.36370 -15.70883 -15.66756 -15.59190 -15.15279 -15.06794 -14.81501 -14.61576 -14.40614 -14.01878 -13.94938 -13.52134 -13.48651 -13.33873 -13.09103 -13.08174 -13.01866 -12.82276 -12.67926 -12.59009 -12.48914 -12.17665 -12.08736 -12.00881 -11.80877 -11.66887 -11.56192 -11.39059 -11.36138 -11.27201 -11.15534 -10.96528 -10.66366 -10.02799 -9.99515 -9.05132 -8.49537 -5.99684 1.34026 1.36707 1.47445 1.73123 1.97308 2.25261 2.29319 2.93514 3.16256 3.23055 3.72446 3.79833 3.84959 3.89365 4.02555 4.03537 4.22102 4.32044 4.34734 4.36777 4.42520 4.46287 4.48276 4.54686 4.58868 4.67055 4.71009 4.78861 4.85578 4.85907 4.94856 4.96410 5.02590 5.05205 5.08319 5.15376 5.17578 5.18376 5.28944 5.30581 5.31629 5.34861 5.35984 5.47899 5.50904 5.56468 5.59133 5.88159 6.03914 6.10812 6.54172 6.70391 7.07606 7.37092 7.51079 8.05309 8.65728 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010089 B = 0.003042 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.747025 B = 9201.404471 C =11252.907809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.099 4.099 4 C -0.103 4.103 5 H 0.116 0.884 6 C -0.139 4.139 7 C 0.506 3.494 8 O -0.597 6.597 9 N -0.698 5.698 10 C 0.135 3.865 11 C 0.062 3.938 12 H 0.054 0.946 13 C -0.098 4.098 14 C -0.118 4.118 15 C -0.103 4.103 16 C 0.036 3.964 17 N -0.484 5.484 18 C 0.046 3.954 19 C 0.408 3.592 20 O -0.618 6.618 21 N -0.571 5.571 22 C -0.333 4.333 23 H 0.078 0.922 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.990 3.010 27 H -0.270 1.270 28 H -0.270 1.270 29 H -0.274 1.274 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.090 0.910 40 H 0.419 0.581 41 H 0.033 0.967 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.037 0.963 46 H 0.086 0.914 47 H 0.071 0.929 48 H 0.086 0.914 49 H 0.032 0.968 50 H 0.071 0.929 51 H 0.110 0.890 52 H 0.098 0.902 53 H 0.394 0.606 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.286 -18.028 15.473 24.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.137 4.137 4 C -0.124 4.124 5 H 0.134 0.866 6 C -0.197 4.197 7 C 0.294 3.706 8 O -0.478 6.478 9 N -0.350 5.350 10 C 0.010 3.990 11 C -0.047 4.047 12 H 0.071 0.929 13 C -0.136 4.136 14 C -0.156 4.156 15 C -0.141 4.141 16 C -0.092 4.092 17 N -0.207 5.207 18 C -0.086 4.086 19 C 0.196 3.804 20 O -0.506 6.506 21 N -0.207 5.207 22 C -0.463 4.463 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.814 3.186 27 H -0.195 1.195 28 H -0.194 1.194 29 H -0.200 1.200 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.258 0.742 41 H 0.052 0.948 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.105 0.895 45 H 0.056 0.944 46 H 0.104 0.896 47 H 0.089 0.911 48 H 0.105 0.895 49 H 0.051 0.949 50 H 0.089 0.911 51 H 0.128 0.872 52 H 0.116 0.884 53 H 0.227 0.773 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.626 -17.373 15.860 23.975 hybrid contribution 0.456 1.928 -1.467 2.465 sum -4.170 -15.445 14.394 21.520 Atomic orbital electron populations 1.21787 0.95960 1.02070 1.01446 1.21572 0.95872 0.95016 1.03188 1.21393 0.92871 0.97814 1.01634 1.21364 0.97258 0.91124 1.02661 0.86620 1.21827 1.01994 1.01947 0.93900 1.21467 0.82034 0.92462 0.74667 1.90684 1.56688 1.48407 1.51988 1.45806 1.06861 1.09004 1.73377 1.21164 0.93412 0.84417 1.00020 1.22043 0.91827 0.96793 0.94040 0.92854 1.21546 0.96345 1.02581 0.93154 1.21552 0.95089 0.99100 0.99817 1.21509 1.00142 1.00116 0.92300 1.22323 0.87148 1.00562 0.99120 1.62538 1.08463 1.47824 1.01879 1.22157 1.01642 0.92229 0.92576 1.22094 0.84602 0.91239 0.82505 1.90411 1.47444 1.60749 1.52011 1.42142 1.50158 1.16704 1.11695 1.19598 1.34876 0.94607 0.97195 0.90372 1.26040 0.96806 1.03176 0.95258 1.69662 1.40860 1.39103 1.06344 0.85029 0.78690 0.77355 0.77518 1.19517 1.19445 1.19958 0.93044 0.93613 0.91525 0.91167 0.90107 0.92830 0.93668 0.90788 0.93056 0.89174 0.74225 0.94840 0.91923 0.91515 0.89483 0.94419 0.89591 0.91083 0.89537 0.94937 0.91067 0.87232 0.88442 0.77252 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.91 71.98 0.71 -1.37 16 2 C -0.12 -1.55 5.69 30.59 0.17 -1.37 16 3 C -0.10 -1.88 4.03 30.59 0.12 -1.76 16 4 C -0.10 -1.77 2.73 -11.54 -0.03 -1.80 16 5 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 6 C -0.14 -1.61 8.84 71.98 0.64 -0.97 16 7 C 0.51 13.27 7.15 87.66 0.63 13.90 16 8 O -0.60 -21.81 15.91 -3.05 -0.05 -21.86 16 9 N -0.70 -16.49 4.91 -463.06 -2.27 -18.77 16 10 C 0.13 4.11 4.56 86.38 0.39 4.50 16 11 C 0.06 1.84 1.72 44.94 0.08 1.92 16 12 H 0.05 2.13 5.71 -2.38 -0.01 2.12 16 13 C -0.10 -2.19 5.26 30.65 0.16 -2.03 16 14 C -0.12 -2.56 6.00 30.68 0.18 -2.37 16 15 C -0.10 -2.20 6.09 30.65 0.19 -2.02 16 16 C 0.04 1.07 5.00 86.32 0.43 1.50 16 17 N -0.48 -13.81 4.04 -875.64 -3.54 -17.35 16 18 C 0.05 1.54 5.45 85.56 0.47 2.01 16 19 C 0.41 18.82 7.18 87.66 0.63 19.45 16 20 O -0.62 -31.96 11.22 -3.07 -0.03 -31.99 16 21 N -0.57 -29.36 5.29 -306.99 -1.62 -30.98 16 22 C -0.33 -18.97 9.68 84.04 0.81 -18.16 16 23 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 24 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 25 N -0.92 -50.38 13.05 21.66 0.28 -50.10 16 26 Si 0.99 43.57 29.55 68.60 2.03 45.59 16 27 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 28 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 29 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 30 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.08 0.79 6.57 -2.39 -0.02 0.78 16 35 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.04 1.08 7.95 -2.38 -0.02 1.06 16 37 H 0.07 0.68 7.56 -2.39 -0.02 0.66 16 38 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.09 0.69 6.57 -2.38 -0.02 0.67 16 40 H 0.42 7.76 6.83 -92.70 -0.63 7.13 16 41 H 0.03 1.25 6.56 -2.39 -0.02 1.23 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.09 1.55 7.31 -2.39 -0.02 1.53 16 45 H 0.04 1.00 8.14 -2.39 -0.02 0.99 16 46 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 47 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.03 1.27 5.66 -2.39 -0.01 1.26 16 50 H 0.07 1.98 8.12 -2.39 -0.02 1.96 16 51 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 52 H 0.10 3.24 6.01 -2.39 -0.01 3.22 16 53 H 0.39 19.61 7.90 -92.71 -0.73 18.88 16 54 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -70.51 412.28 0.37 -70.13 By element: Atomic # 1 Polarization: 44.58 SS G_CDS: -0.47 Total: 44.11 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 6.05 Total: 11.21 kcal Atomic # 7 Polarization: -110.04 SS G_CDS: -7.15 Total: -117.20 kcal Atomic # 8 Polarization: -53.76 SS G_CDS: -0.08 Total: -53.85 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -70.51 0.37 -70.13 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491205770.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.629 kcal (2) G-P(sol) polarization free energy of solvation -70.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds