Wall clock time and date at job start Tue Mar 31 2020 23:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21283 * 120.00518 * 2 1 4 4 N 1.34780 * 119.99372 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99550 * 179.97438 * 4 2 1 6 6 H 1.09002 * 109.47351 * 34.99942 * 5 4 2 7 7 C 1.50694 * 109.47115 * 155.00234 * 5 4 2 8 8 O 1.21281 * 120.00060 * 359.97438 * 7 5 4 9 9 N 1.34782 * 120.00040 * 180.02562 * 7 5 4 10 10 C 1.46506 * 119.99815 * 179.97438 * 9 7 5 11 11 C 1.52997 * 109.46762 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46866 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.46985 * 186.09063 * 12 11 10 14 14 H 1.08998 * 109.87157 * 50.47746 * 13 12 11 15 15 C 1.54320 * 109.87975 * 171.65114 * 13 12 11 16 16 C 1.55163 * 102.94133 * 141.60868 * 15 13 12 17 17 C 1.54912 * 101.57804 * 324.50046 * 16 15 13 18 18 N 1.47016 * 109.88172 * 289.46053 * 13 12 11 19 19 C 1.36943 * 125.64621 * 61.60959 * 18 13 12 20 20 H 1.07996 * 120.00164 * 307.12693 * 19 18 13 21 21 C 1.38815 * 120.00075 * 127.13147 * 19 18 13 22 22 N 1.31617 * 120.00210 * 172.04519 * 21 19 18 23 23 Si 1.86806 * 119.99743 * 352.04334 * 21 19 18 24 24 H 1.48493 * 109.46988 * 93.99245 * 23 21 19 25 25 H 1.48501 * 109.46720 * 213.99255 * 23 21 19 26 26 H 1.48502 * 109.47192 * 333.98973 * 23 21 19 27 27 C 1.53007 * 109.47013 * 275.00058 * 5 4 2 28 28 C 1.53002 * 109.46963 * 304.99847 * 27 5 4 29 29 C 1.52996 * 109.47350 * 65.00344 * 27 5 4 30 30 H 1.08995 * 109.47373 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46853 * 300.00380 * 1 2 3 32 32 H 1.09003 * 109.47220 * 59.99420 * 1 2 3 33 33 H 0.96999 * 120.00352 * 359.97438 * 4 2 1 34 34 H 0.96994 * 119.99841 * 359.97438 * 9 7 5 35 35 H 1.08997 * 109.46678 * 299.99856 * 10 9 7 36 36 H 1.08993 * 109.47144 * 59.99884 * 10 9 7 37 37 H 1.08999 * 109.46796 * 299.99539 * 11 10 9 38 38 H 1.08993 * 109.47522 * 59.99949 * 11 10 9 39 39 H 1.09004 * 109.46999 * 306.08843 * 12 11 10 40 40 H 1.08996 * 109.47114 * 66.09061 * 12 11 10 41 41 H 1.08989 * 110.72451 * 259.97229 * 15 13 12 42 42 H 1.08996 * 110.72094 * 23.25424 * 15 13 12 43 43 H 1.08993 * 111.00893 * 206.42897 * 16 15 13 44 44 H 1.09003 * 111.03666 * 82.58646 * 16 15 13 45 45 H 1.09000 * 110.36867 * 278.16351 * 17 16 15 46 46 H 1.09012 * 110.36182 * 155.84490 * 17 16 15 47 47 H 0.96996 * 119.99936 * 179.97438 * 22 21 19 48 48 H 1.09002 * 109.46863 * 184.99881 * 27 5 4 49 49 H 1.08998 * 109.46857 * 60.00541 * 28 27 5 50 50 H 1.08999 * 109.46701 * 179.97438 * 28 27 5 51 51 H 1.08993 * 109.47339 * 300.00251 * 28 27 5 52 52 H 1.08995 * 109.47178 * 59.99671 * 29 27 5 53 53 H 1.08999 * 109.47204 * 180.02562 * 29 27 5 54 54 H 1.09006 * 109.46581 * 300.00049 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.6458 -1.1673 -0.0011 6 1 4.0094 -0.3257 0.5884 7 6 4.1483 -2.4552 0.5988 8 8 3.3603 -3.2905 0.9889 9 7 5.4734 -2.6782 0.7028 10 6 5.9619 -3.9300 1.2866 11 6 7.4919 -3.9296 1.2870 12 6 8.0021 -5.2372 1.8961 13 6 9.5244 -5.1746 2.0364 14 1 9.8123 -4.2522 2.5407 15 6 10.0281 -6.3937 2.8373 16 6 11.3492 -6.7638 2.1126 17 6 10.9962 -6.4417 0.6390 18 7 10.1518 -5.2352 0.7083 19 6 9.9798 -4.3226 -0.2981 20 1 8.9843 -4.0562 -0.6212 21 6 11.0849 -3.7399 -0.9031 22 7 10.9295 -2.9851 -1.9701 23 14 12.7928 -4.0271 -0.2029 24 1 13.4292 -5.1712 -0.9038 25 1 13.6181 -2.8076 -0.3953 26 1 12.6887 -4.3307 1.2470 27 6 4.1552 -1.0413 -1.4383 28 6 3.5448 -2.1523 -2.2951 29 6 3.7504 0.3208 -2.0054 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.6957 -2.0073 -0.0005 34 1 6.1036 -2.0100 0.3912 35 1 5.5986 -4.0195 2.3103 36 1 5.5986 -4.7718 0.6972 37 1 7.8554 -3.8398 0.2634 38 1 7.8548 -3.0878 1.8766 39 1 7.5522 -5.3802 2.8786 40 1 7.7309 -6.0702 1.2475 41 1 10.2208 -6.1208 3.8747 42 1 9.3137 -7.2149 2.7797 43 1 11.5798 -7.8219 2.2367 44 1 12.1742 -6.1427 2.4615 45 1 10.4423 -7.2673 0.1923 46 1 11.9021 -6.2384 0.0677 47 1 11.7017 -2.5777 -2.3926 48 1 5.2415 -1.1304 -1.4479 49 1 2.4585 -2.0631 -2.2855 50 1 3.9074 -2.0622 -3.3190 51 1 3.8332 -3.1227 -1.8911 52 1 4.1852 1.1122 -1.3950 53 1 4.1129 0.4104 -3.0294 54 1 2.6640 0.4099 -1.9958 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492176325.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:19 Heat of formation + Delta-G solvation = -90.533988 kcal Electronic energy + Delta-G solvation = -30775.293632 eV Core-core repulsion = 26746.124187 eV Total energy + Delta-G solvation = -4029.169445 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.74534 -40.18926 -39.60427 -37.19823 -36.63273 -34.59286 -34.32814 -33.73040 -31.69726 -30.94221 -30.03493 -28.17131 -27.89685 -26.37011 -25.30988 -22.85404 -22.44275 -21.80089 -21.58262 -20.90536 -20.57594 -18.97429 -18.61397 -17.85953 -17.77727 -17.25965 -16.90963 -16.53882 -16.35572 -15.96939 -15.72855 -15.25876 -15.06622 -14.85382 -14.74217 -14.58190 -14.24054 -14.04724 -13.93712 -13.54965 -13.40827 -13.32491 -13.30704 -13.16794 -13.03772 -12.95471 -12.83773 -12.48349 -12.41218 -12.38226 -12.13497 -12.07491 -11.89302 -11.83028 -11.60353 -11.38958 -11.35250 -11.10777 -10.96175 -10.89098 -10.61094 -10.17348 -10.07679 -8.39313 -8.03808 -5.75465 1.32034 1.39969 1.42880 1.52664 1.62980 1.86588 2.45051 2.45899 3.14106 3.45476 3.49173 3.68529 3.87796 3.89767 3.95468 4.05009 4.11342 4.18119 4.20834 4.27614 4.40483 4.49609 4.53997 4.56276 4.59390 4.68486 4.73693 4.75217 4.81653 4.85336 4.87484 4.93008 4.94785 4.99936 5.05050 5.05142 5.10504 5.19551 5.22853 5.24797 5.30853 5.36114 5.37816 5.42236 5.45541 5.57313 5.68081 6.05028 6.39223 6.47423 6.53323 6.99425 7.04000 7.23483 7.58337 8.36931 9.02469 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016049 B = 0.002526 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.229495 B =11080.497353 C =12276.601652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.507 3.493 3 O -0.581 6.581 4 N -0.703 5.703 5 C 0.136 3.864 6 H 0.108 0.892 7 C 0.516 3.484 8 O -0.569 6.569 9 N -0.715 5.715 10 C 0.132 3.868 11 C -0.131 4.131 12 C -0.105 4.105 13 C 0.145 3.855 14 H 0.027 0.973 15 C -0.115 4.115 16 C -0.131 4.131 17 C 0.108 3.892 18 N -0.619 5.619 19 C -0.236 4.236 20 H 0.067 0.933 21 C -0.012 4.012 22 N -0.949 5.949 23 Si 0.942 3.058 24 H -0.287 1.287 25 H -0.312 1.312 26 H -0.250 1.250 27 C -0.101 4.101 28 C -0.142 4.142 29 C -0.129 4.129 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.415 0.585 34 H 0.410 0.590 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.051 0.949 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.055 0.945 45 H 0.032 0.968 46 H 0.017 0.983 47 H 0.261 0.739 48 H 0.083 0.917 49 H 0.066 0.934 50 H 0.064 0.936 51 H 0.041 0.959 52 H 0.050 0.950 53 H 0.058 0.942 54 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.731 -0.284 6.742 18.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.297 3.703 3 O -0.461 6.461 4 N -0.358 5.358 5 C 0.026 3.974 6 H 0.126 0.874 7 C 0.302 3.698 8 O -0.449 6.449 9 N -0.366 5.366 10 C 0.009 3.991 11 C -0.168 4.168 12 C -0.145 4.145 13 C 0.040 3.960 14 H 0.045 0.955 15 C -0.153 4.153 16 C -0.169 4.169 17 C -0.016 4.016 18 N -0.346 5.346 19 C -0.365 4.365 20 H 0.084 0.916 21 C -0.209 4.209 22 N -0.592 5.592 23 Si 0.771 3.229 24 H -0.215 1.215 25 H -0.241 1.241 26 H -0.174 1.174 27 C -0.121 4.121 28 C -0.199 4.199 29 C -0.186 4.186 30 H 0.116 0.884 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.253 0.747 34 H 0.246 0.754 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.113 0.887 44 H 0.074 0.926 45 H 0.050 0.950 46 H 0.035 0.965 47 H 0.070 0.930 48 H 0.101 0.899 49 H 0.085 0.915 50 H 0.083 0.917 51 H 0.060 0.940 52 H 0.069 0.931 53 H 0.077 0.923 54 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.796 -0.009 6.866 18.145 hybrid contribution 1.453 0.127 -0.513 1.547 sum -15.342 0.118 6.353 16.606 Atomic orbital electron populations 1.21873 0.88101 1.06100 1.06180 1.21510 0.92168 0.82490 0.74150 1.90728 1.71576 1.32542 1.51292 1.45875 1.05086 1.10087 1.74711 1.20780 0.83271 0.95501 0.97807 0.87409 1.20711 0.82653 0.88432 0.78049 1.90652 1.55830 1.47620 1.50759 1.46037 1.06767 1.21438 1.62341 1.21343 0.94487 0.85246 0.98010 1.21980 0.92316 0.98977 1.03533 1.21762 0.96183 0.96242 1.00281 1.21329 0.92262 0.96574 0.85806 0.95494 1.22580 0.96492 0.97432 0.98818 1.22771 0.97867 1.01852 0.94445 1.21994 0.93382 0.89891 0.96301 1.44748 1.55538 1.23241 1.11100 1.18637 0.92632 1.15413 1.09810 0.91581 1.26463 1.01890 0.95513 0.97031 1.69877 1.31198 1.36132 1.22014 0.85773 0.81102 0.75333 0.80653 1.21458 1.24130 1.17383 1.21512 1.00871 0.97284 0.92437 1.21773 1.01495 0.96753 0.99912 1.21761 1.01616 0.94860 1.00391 0.88358 0.87839 0.87574 0.74710 0.75373 0.91374 0.92662 0.90928 0.92245 0.90317 0.93015 0.89476 0.89767 0.88675 0.92592 0.95039 0.96476 0.93029 0.89887 0.91465 0.91674 0.93985 0.93094 0.92273 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 10.39 71.24 0.74 -0.97 16 2 C 0.51 9.98 6.51 87.66 0.57 10.55 16 3 O -0.58 -15.89 14.24 -3.04 -0.04 -15.93 16 4 N -0.70 -13.80 3.93 -446.08 -1.75 -15.55 16 5 C 0.14 3.09 2.36 44.25 0.10 3.20 16 6 H 0.11 2.61 7.58 -2.39 -0.02 2.59 16 7 C 0.52 13.61 6.20 87.65 0.54 14.16 16 8 O -0.57 -17.57 15.84 -3.03 -0.05 -17.62 16 9 N -0.72 -18.85 5.42 -463.06 -2.51 -21.36 16 10 C 0.13 3.72 5.67 86.38 0.49 4.21 16 11 C -0.13 -4.18 4.86 30.59 0.15 -4.03 16 12 C -0.11 -3.21 4.69 30.60 0.14 -3.06 16 13 C 0.15 5.11 3.21 45.34 0.15 5.26 16 14 H 0.03 1.02 8.10 -2.39 -0.02 1.00 16 15 C -0.12 -3.14 6.47 31.78 0.21 -2.93 16 16 C -0.13 -3.98 7.09 31.99 0.23 -3.75 16 17 C 0.11 4.30 6.19 86.86 0.54 4.84 16 18 N -0.62 -27.23 2.38 -668.27 -1.59 -28.83 16 19 C -0.24 -12.39 9.35 84.03 0.79 -11.60 16 20 H 0.07 3.72 5.18 -2.91 -0.02 3.70 16 21 C -0.01 -0.66 5.50 84.86 0.47 -0.19 16 22 N -0.95 -56.99 13.97 21.65 0.30 -56.68 16 23 Si 0.94 45.75 25.12 68.60 1.72 47.48 16 24 H -0.29 -13.79 7.00 99.48 0.70 -13.09 16 25 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16 26 H -0.25 -11.43 6.44 99.48 0.64 -10.79 16 27 C -0.10 -2.24 2.69 -10.79 -0.03 -2.27 16 28 C -0.14 -3.02 8.79 71.98 0.63 -2.39 16 29 C -0.13 -2.90 7.80 71.98 0.56 -2.34 16 30 H 0.10 0.61 7.91 -2.39 -0.02 0.59 16 31 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.41 7.30 7.63 -92.71 -0.71 6.60 16 34 H 0.41 10.20 7.83 -92.71 -0.73 9.47 16 35 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.07 2.92 4.50 -2.39 -0.01 2.90 16 38 H 0.06 1.90 8.11 -2.39 -0.02 1.88 16 39 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 40 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.08 2.00 7.85 -2.39 -0.02 1.98 16 43 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.06 1.79 7.54 -2.39 -0.02 1.77 16 45 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.02 0.75 4.62 -2.38 -0.01 0.74 16 47 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 48 H 0.08 1.92 7.43 -2.39 -0.02 1.90 16 49 H 0.07 1.25 7.47 -2.39 -0.02 1.23 16 50 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 51 H 0.04 1.01 7.38 -2.39 -0.02 0.99 16 52 H 0.05 1.26 7.85 -2.39 -0.02 1.24 16 53 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 54 H 0.05 1.26 5.65 -2.38 -0.01 1.24 16 Total: -1.00 -69.39 409.73 1.75 -67.64 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: -0.61 Total: 32.19 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 6.27 Total: 8.67 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -5.55 Total: -122.42 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -0.09 Total: -33.55 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.72 Total: 47.48 kcal Total: -69.39 1.75 -67.64 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492176325.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.894 kcal (2) G-P(sol) polarization free energy of solvation -69.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds