Wall clock time and date at job start Tue Mar 31 2020 23:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.47042 * 2 1 4 4 C 1.52997 * 109.47335 * 239.99905 * 2 1 3 5 5 N 1.46903 * 109.47130 * 316.16161 * 4 2 1 6 6 C 1.47015 * 110.99882 * 290.39931 * 5 4 2 7 7 C 1.53102 * 109.25504 * 177.60825 * 6 5 4 8 8 O 1.43009 * 109.26065 * 56.84802 * 7 6 5 9 9 C 1.43013 * 113.74078 * 301.33370 * 8 7 6 10 10 C 1.47020 * 111.00007 * 166.76638 * 5 4 2 11 11 C 1.50701 * 109.47131 * 119.99519 * 2 1 3 12 12 O 1.21281 * 120.00103 * 141.97087 * 11 2 1 13 13 N 1.34774 * 120.00064 * 321.98331 * 11 2 1 14 14 C 1.46502 * 120.00171 * 179.97438 * 13 11 2 15 15 H 1.08999 * 109.51908 * 34.91477 * 14 13 11 16 16 C 1.53041 * 109.49757 * 154.99313 * 14 13 11 17 17 C 1.53047 * 109.53454 * 181.31671 * 16 14 13 18 18 C 1.53192 * 109.31115 * 298.63494 * 17 16 14 19 19 N 1.46927 * 108.77568 * 54.63811 * 18 17 16 20 20 C 1.36939 * 120.62758 * 126.35986 * 19 18 17 21 21 H 1.07999 * 120.00355 * 329.19396 * 20 19 18 22 22 C 1.38817 * 119.99738 * 149.19007 * 20 19 18 23 23 N 1.31618 * 119.99593 * 336.11556 * 22 20 19 24 24 Si 1.86799 * 120.00206 * 156.11009 * 22 20 19 25 25 H 1.48502 * 109.46999 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47073 * 240.00420 * 24 22 20 27 27 H 1.48496 * 109.46979 * 120.00056 * 24 22 20 28 28 C 1.46921 * 118.73965 * 306.64080 * 19 18 17 29 29 H 1.08994 * 109.47250 * 305.68573 * 1 2 3 30 30 H 1.09007 * 109.46921 * 65.69194 * 1 2 3 31 31 H 1.09001 * 109.46980 * 185.68212 * 1 2 3 32 32 H 1.09000 * 109.46884 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46400 * 299.99717 * 3 2 1 34 34 H 1.08993 * 109.46805 * 59.99478 * 3 2 1 35 35 H 1.09003 * 109.47319 * 76.16546 * 4 2 1 36 36 H 1.09001 * 109.47099 * 196.15996 * 4 2 1 37 37 H 1.08992 * 109.50950 * 297.54371 * 6 5 4 38 38 H 1.08994 * 109.50434 * 57.67396 * 6 5 4 39 39 H 1.09005 * 109.50203 * 296.91561 * 7 6 5 40 40 H 1.09005 * 109.53984 * 176.80938 * 7 6 5 41 41 H 1.09003 * 109.50375 * 298.73093 * 9 8 7 42 42 H 1.08996 * 109.54369 * 178.62825 * 9 8 7 43 43 H 1.09003 * 109.50610 * 302.32982 * 10 5 4 44 44 H 1.09002 * 109.50561 * 62.41114 * 10 5 4 45 45 H 0.97003 * 119.99872 * 359.97438 * 13 11 2 46 46 H 1.09001 * 109.45795 * 61.30320 * 16 14 13 47 47 H 1.08997 * 109.46149 * 301.34098 * 16 14 13 48 48 H 1.09008 * 109.49256 * 178.68897 * 17 16 14 49 49 H 1.08991 * 109.49489 * 58.58867 * 17 16 14 50 50 H 1.08999 * 109.59067 * 294.84780 * 18 17 16 51 51 H 1.09000 * 109.58423 * 174.42348 * 18 17 16 52 52 H 0.96994 * 120.00879 * 354.03978 * 23 22 20 53 53 H 1.09000 * 109.58673 * 173.14029 * 28 19 18 54 54 H 1.08998 * 109.58346 * 293.56676 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 1.2615 -1.9494 -1.4577 6 6 1.5635 -2.9471 -0.4210 7 6 0.6892 -4.1844 -0.6412 8 8 0.9110 -4.6902 -1.9603 9 6 0.6262 -3.7448 -2.9949 10 6 1.4998 -2.5030 -2.7987 11 6 2.0324 -0.7103 1.2305 12 8 3.0145 -1.4187 1.1634 13 7 1.3901 -0.5586 2.4056 14 6 1.8780 -1.2495 3.6017 15 1 2.9666 -1.2988 3.5752 16 6 1.4315 -0.4859 4.8506 17 6 1.9686 -1.1889 6.0995 18 6 1.3943 -2.6074 6.1689 19 7 1.6951 -3.3015 4.9094 20 6 2.3298 -4.5150 4.9160 21 1 3.0334 -4.7522 5.7002 22 6 2.0686 -5.4402 3.9146 23 7 0.9316 -5.3910 3.2535 24 14 3.3310 -6.7548 3.5051 25 1 4.5157 -6.5949 4.3862 26 1 3.7467 -6.6171 2.0861 27 1 2.7340 -8.0977 3.7181 28 6 1.3078 -2.6661 3.6426 29 1 -0.3633 0.5994 0.8346 30 1 -0.3633 0.4231 -0.9366 31 1 -0.3633 -1.0226 0.1017 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.9295 -0.0693 -2.1158 36 1 3.0918 -0.9757 -1.1179 37 1 2.6146 -3.2286 -0.4821 38 1 1.3556 -2.5247 0.5620 39 1 -0.3605 -3.9134 -0.5270 40 1 0.9492 -4.9494 0.0905 41 1 -0.4253 -3.4610 -2.9492 42 1 0.8408 -4.1911 -3.9659 43 1 1.2456 -1.7564 -3.5512 44 1 2.5502 -2.7767 -2.8980 45 1 0.6046 0.0081 2.4594 46 1 0.3426 -0.4585 4.8894 47 1 1.8192 0.5320 4.8118 48 1 1.6698 -0.6316 6.9874 49 1 3.0562 -1.2388 6.0495 50 1 0.3146 -2.5580 6.3101 51 1 1.8493 -3.1455 7.0005 52 1 0.2409 -4.7652 3.5222 53 1 1.7059 -3.2430 2.8078 54 1 0.2209 -2.6217 3.5735 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494319339.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:15 Heat of formation + Delta-G solvation = -81.984995 kcal Electronic energy + Delta-G solvation = -33382.668552 eV Core-core repulsion = 29353.869819 eV Total energy + Delta-G solvation = -4028.798733 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.89376 -40.29092 -39.28785 -37.33479 -36.05700 -35.25910 -34.40542 -32.16913 -31.74225 -30.60579 -29.04627 -28.12905 -27.07786 -25.56687 -25.07499 -24.52290 -23.89204 -22.68512 -21.46931 -21.17169 -20.07862 -19.38270 -17.98359 -17.56792 -17.31950 -17.08479 -16.61822 -16.26819 -16.13230 -16.05012 -15.77818 -15.70009 -15.38186 -15.20707 -15.07105 -14.86339 -14.36299 -14.23479 -14.07631 -13.61275 -13.41109 -13.35641 -13.18987 -13.05264 -12.92166 -12.86433 -12.65179 -12.47441 -12.41769 -12.21808 -12.04784 -12.00728 -11.86944 -11.85979 -11.85229 -11.65626 -11.45583 -11.27086 -10.66423 -10.62165 -10.49180 -10.13250 -9.46938 -8.91128 -8.23141 -5.44687 1.47860 1.57123 1.67774 1.70671 2.16718 2.58474 2.68827 2.90134 3.21212 3.48209 3.61423 3.76625 3.86726 3.90367 3.95158 4.02418 4.05260 4.11637 4.13142 4.15352 4.25458 4.32236 4.34726 4.45321 4.54012 4.59480 4.67984 4.69037 4.69918 4.75485 4.78973 4.81420 4.89933 4.94107 4.96817 5.00387 5.00913 5.06230 5.09133 5.09827 5.12951 5.21367 5.25987 5.41925 5.47967 5.57286 5.80148 5.84336 5.96654 6.14099 6.39293 6.60024 7.05757 7.32992 7.74902 8.19857 8.97712 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009405 B = 0.005577 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2976.378823 B = 5019.359771 C = 7283.754639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.073 4.073 3 C -0.129 4.129 4 C 0.069 3.931 5 N -0.522 5.522 6 C 0.042 3.958 7 C 0.075 3.925 8 O -0.409 6.409 9 C 0.056 3.944 10 C 0.017 3.983 11 C 0.513 3.487 12 O -0.587 6.587 13 N -0.709 5.709 14 C 0.136 3.864 15 H 0.046 0.954 16 C -0.106 4.106 17 C -0.122 4.122 18 C 0.138 3.862 19 N -0.615 5.615 20 C -0.360 4.360 21 H 0.044 0.956 22 C -0.062 4.062 23 N -0.926 5.926 24 Si 1.101 2.899 25 H -0.275 1.275 26 H -0.299 1.299 27 H -0.282 1.282 28 C 0.165 3.835 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.119 0.881 36 H 0.021 0.979 37 H 0.005 0.995 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.025 0.975 45 H 0.412 0.588 46 H 0.077 0.923 47 H 0.088 0.912 48 H 0.098 0.902 49 H 0.047 0.953 50 H 0.023 0.977 51 H 0.048 0.952 52 H 0.255 0.745 53 H 0.031 0.969 54 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.077 18.177 -9.775 21.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.077 4.077 3 C -0.187 4.187 4 C -0.059 4.059 5 N -0.246 5.246 6 C -0.087 4.087 7 C -0.002 4.002 8 O -0.329 6.329 9 C -0.020 4.020 10 C -0.111 4.111 11 C 0.301 3.699 12 O -0.467 6.467 13 N -0.361 5.361 14 C 0.029 3.971 15 H 0.065 0.935 16 C -0.144 4.144 17 C -0.161 4.161 18 C 0.013 3.987 19 N -0.340 5.340 20 C -0.490 4.490 21 H 0.062 0.938 22 C -0.260 4.260 23 N -0.566 5.566 24 Si 0.927 3.073 25 H -0.200 1.200 26 H -0.226 1.226 27 H -0.208 1.208 28 C 0.038 3.962 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.137 0.863 36 H 0.039 0.961 37 H 0.023 0.977 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.043 0.957 45 H 0.249 0.751 46 H 0.095 0.905 47 H 0.107 0.893 48 H 0.116 0.884 49 H 0.066 0.934 50 H 0.041 0.959 51 H 0.067 0.933 52 H 0.065 0.935 53 H 0.050 0.950 54 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -3.460 16.340 -10.805 19.893 hybrid contribution 0.499 0.591 1.482 1.672 sum -2.961 16.932 -9.322 19.554 Atomic orbital electron populations 1.21710 0.90358 1.02135 1.03895 1.20905 0.99182 0.97097 0.90512 1.21787 1.00859 0.91117 1.04923 1.22168 0.94543 0.91175 0.97974 1.62425 1.55557 1.04570 1.02072 1.22628 0.96159 0.93171 0.96711 1.22469 0.98709 0.95170 0.83893 1.87960 1.89160 1.40455 1.15280 1.22945 0.99211 0.88665 0.91223 1.22903 0.98263 0.98619 0.91308 1.21298 0.82602 0.80293 0.85669 1.90754 1.29231 1.40881 1.85842 1.46002 1.32281 1.49537 1.08289 1.21253 0.97818 0.92660 0.85348 0.93524 1.21635 1.01631 0.98888 0.92206 1.21894 0.99982 0.95951 0.98276 1.21156 0.96832 0.92810 0.87920 1.44246 1.69680 1.19256 1.00835 1.20112 1.20289 0.93485 1.15067 0.93831 1.26859 1.00438 1.00926 0.97822 1.70811 1.04026 1.37227 1.44575 0.83051 0.74144 0.74377 0.75689 1.20018 1.22648 1.20808 1.20869 0.94617 0.91910 0.88775 0.91043 0.89186 0.93730 0.93425 0.88188 0.90552 0.86305 0.96059 0.97700 0.90780 0.92008 0.91241 0.91291 0.86174 0.85854 0.95652 0.75072 0.90481 0.89338 0.88355 0.93438 0.95879 0.93290 0.93526 0.95005 0.97709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.31 7.43 71.98 0.53 -1.77 16 2 C -0.07 -1.68 0.73 -52.92 -0.04 -1.72 16 3 C -0.13 -2.03 8.39 71.98 0.60 -1.43 16 4 C 0.07 1.72 4.22 86.30 0.36 2.09 16 5 N -0.52 -14.79 3.50 -895.20 -3.13 -17.92 16 6 C 0.04 1.66 3.87 86.32 0.33 1.99 16 7 C 0.07 3.02 7.01 72.02 0.50 3.53 16 8 O -0.41 -15.08 10.83 -148.98 -1.61 -16.69 16 9 C 0.06 1.40 7.01 72.01 0.50 1.90 16 10 C 0.02 0.40 5.63 86.31 0.49 0.89 16 11 C 0.51 17.12 4.16 87.66 0.36 17.49 16 12 O -0.59 -26.34 13.19 -3.03 -0.04 -26.38 16 13 N -0.71 -21.62 4.90 -442.84 -2.17 -23.79 16 14 C 0.14 5.17 2.59 44.93 0.12 5.28 16 15 H 0.05 2.13 7.58 -2.39 -0.02 2.11 16 16 C -0.11 -3.03 5.36 30.62 0.16 -2.87 16 17 C -0.12 -3.84 6.08 30.67 0.19 -3.65 16 18 C 0.14 5.68 6.52 86.36 0.56 6.25 16 19 N -0.62 -31.93 2.81 -699.93 -1.97 -33.89 16 20 C -0.36 -21.24 9.46 84.03 0.80 -20.44 16 21 H 0.04 2.61 7.94 -2.91 -0.02 2.58 16 22 C -0.06 -3.71 4.69 84.86 0.40 -3.31 16 23 N -0.93 -57.81 12.52 21.65 0.27 -57.54 16 24 Si 1.10 55.88 29.98 68.60 2.06 57.94 16 25 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 26 H -0.30 -15.63 7.11 99.48 0.71 -14.93 16 27 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 28 C 0.17 8.06 4.27 86.22 0.37 8.43 16 29 H 0.07 1.01 7.03 -2.39 -0.02 1.00 16 30 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.04 1.12 7.01 -2.39 -0.02 1.10 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.12 2.00 7.87 -2.39 -0.02 1.98 16 36 H 0.02 0.68 7.20 -2.39 -0.02 0.66 16 37 H 0.00 0.22 7.86 -2.39 -0.02 0.20 16 38 H 0.07 3.25 4.42 -2.39 -0.01 3.24 16 39 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 40 H 0.07 3.38 8.14 -2.38 -0.02 3.36 16 41 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.12 1.92 8.06 -2.39 -0.02 1.90 16 44 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.41 9.28 7.04 -92.71 -0.65 8.63 16 46 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 49 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 52 H 0.25 16.12 6.78 -92.71 -0.63 15.49 16 53 H 0.03 1.86 6.46 -2.39 -0.02 1.85 16 54 H 0.01 0.25 7.85 -2.39 -0.02 0.23 16 Total: -1.00 -79.80 401.50 0.01 -79.79 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.35 Total: 25.83 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 6.25 Total: 12.66 kcal Atomic # 7 Polarization: -126.15 SS G_CDS: -7.00 Total: -133.14 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -1.65 Total: -43.07 kcal Atomic # 14 Polarization: 55.88 SS G_CDS: 2.06 Total: 57.94 kcal Total: -79.80 0.01 -79.79 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494319339.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.199 kcal (2) G-P(sol) polarization free energy of solvation -79.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds