Wall clock time and date at job start Tue Mar 31 2020 22:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21284 * 120.00421 * 2 1 4 4 N 1.34782 * 119.99636 * 179.97438 * 2 1 3 5 5 C 1.46497 * 119.99818 * 179.97438 * 4 2 1 6 6 H 1.09005 * 109.47370 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.47278 * 59.99817 * 5 4 2 8 8 C 1.53002 * 109.46908 * 65.00237 * 7 5 4 9 9 C 1.53784 * 113.61275 * 272.49835 * 8 7 5 10 10 C 1.53788 * 87.07834 * 220.02029 * 9 8 7 11 11 C 1.53778 * 87.08223 * 25.43488 * 10 9 8 12 12 C 1.50703 * 109.47121 * 299.99992 * 5 4 2 13 13 O 1.21273 * 120.00280 * 20.00105 * 12 5 4 14 14 N 1.34781 * 120.00160 * 199.99888 * 12 5 4 15 15 C 1.46493 * 120.00398 * 179.97438 * 14 12 5 16 16 C 1.52993 * 109.47346 * 180.02562 * 15 14 12 17 17 H 1.09004 * 109.47177 * 65.00353 * 16 15 14 18 18 N 1.46493 * 109.47542 * 305.00099 * 16 15 14 19 19 C 1.36936 * 120.00314 * 154.99721 * 18 16 15 20 20 H 1.08001 * 120.00159 * 0.02562 * 19 18 16 21 21 C 1.38811 * 119.99842 * 180.02562 * 19 18 16 22 22 N 1.31624 * 119.99540 * 179.72505 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72270 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72118 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72153 * 23 21 19 27 27 C 1.53006 * 109.47133 * 185.00123 * 16 15 14 28 28 C 1.52999 * 109.47148 * 180.02562 * 27 16 15 29 29 C 1.53003 * 109.47119 * 300.00294 * 27 16 15 30 30 H 1.09002 * 109.47087 * 240.00476 * 1 2 3 31 31 H 1.09000 * 109.46824 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.47479 * 120.00038 * 1 2 3 33 33 H 0.96992 * 120.00307 * 359.97438 * 4 2 1 34 34 H 1.09005 * 109.47205 * 184.99854 * 7 5 4 35 35 H 1.09000 * 109.47313 * 305.00007 * 7 5 4 36 36 H 1.08994 * 112.85253 * 43.80692 * 8 7 5 37 37 H 1.09006 * 113.61219 * 334.56401 * 9 8 7 38 38 H 1.08997 * 113.61394 * 105.47220 * 9 8 7 39 39 H 1.08999 * 113.61272 * 270.88339 * 10 9 8 40 40 H 1.09005 * 113.61053 * 139.98347 * 10 9 8 41 41 H 1.09006 * 113.61097 * 220.02313 * 11 10 9 42 42 H 1.08993 * 113.69674 * 89.12900 * 11 10 9 43 43 H 0.96998 * 119.99643 * 359.97438 * 14 12 5 44 44 H 1.09009 * 109.46774 * 60.00205 * 15 14 12 45 45 H 1.09002 * 109.47338 * 300.00832 * 15 14 12 46 46 H 0.97000 * 120.00040 * 334.99853 * 18 16 15 47 47 H 0.96999 * 119.99889 * 180.27497 * 22 21 19 48 48 H 1.08995 * 109.47185 * 60.00093 * 27 16 15 49 49 H 1.08995 * 109.47266 * 59.99819 * 28 27 16 50 50 H 1.09000 * 109.47204 * 179.97438 * 28 27 16 51 51 H 1.09003 * 109.47147 * 299.99964 * 28 27 16 52 52 H 1.08997 * 109.47066 * 59.99786 * 29 27 16 53 53 H 1.09000 * 109.47191 * 180.02562 * 29 27 16 54 54 H 1.09004 * 109.47044 * 299.99680 * 29 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6458 -1.1673 0.0000 6 1 4.0091 -2.1950 0.0000 7 6 4.1563 -0.4452 1.2485 8 6 3.7521 -1.2346 2.4952 9 6 2.3590 -0.8664 3.0326 10 6 2.9612 -0.9744 4.4435 11 6 4.3221 -0.6571 3.8016 12 6 4.1477 -0.4578 -1.2312 13 8 3.4192 0.3033 -1.8318 14 7 5.4063 -0.6689 -1.6648 15 6 5.8940 0.0204 -2.8619 16 6 7.3416 -0.3930 -3.1342 17 1 7.3765 -1.4547 -3.3786 18 7 8.1545 -0.1393 -1.9422 19 6 9.3017 -0.8563 -1.7304 20 1 9.6075 -1.6087 -2.4423 21 6 10.0716 -0.6162 -0.6006 22 7 11.1714 -1.3093 -0.3943 23 14 9.5424 0.6845 0.6313 24 1 10.1395 1.9919 0.2578 25 1 8.0617 0.7972 0.6268 26 1 10.0053 0.2985 1.9885 27 6 7.8915 0.4190 -4.3087 28 6 9.3390 0.0052 -4.5815 29 6 7.0426 0.1540 -5.5537 30 1 -0.3633 -0.5138 0.8900 31 1 -0.3633 1.0277 0.0005 32 1 -0.3634 -0.5138 -0.8899 33 1 1.6958 -2.0073 0.0013 34 1 5.2427 -0.3671 1.2043 35 1 3.7218 0.5534 1.2939 36 1 3.9101 -2.3075 2.3866 37 1 2.0421 0.1428 2.7692 38 1 1.5979 -1.6182 2.8240 39 1 2.9017 -1.9765 4.8681 40 1 2.6107 -0.2020 5.1281 41 1 5.1458 -1.2401 4.2138 42 1 4.5433 0.4088 3.7480 43 1 5.9891 -1.2773 -1.1841 44 1 5.8468 1.0981 -2.7051 45 1 5.2725 -0.2501 -3.7155 46 1 7.8801 0.5367 -1.3029 47 1 11.7073 -1.1443 0.3972 48 1 7.8567 1.4806 -4.0644 49 1 9.3735 -1.0565 -4.8259 50 1 9.7306 0.5832 -5.4185 51 1 9.9441 0.1936 -3.6946 52 1 6.0113 0.4485 -5.3597 53 1 7.4346 0.7321 -6.3906 54 1 7.0775 -0.9077 -5.7981 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496598671.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:26 Heat of formation + Delta-G solvation = -77.289623 kcal Electronic energy + Delta-G solvation = -31742.508415 eV Core-core repulsion = 27713.913289 eV Total energy + Delta-G solvation = -4028.595126 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.66529 -39.99609 -39.39352 -38.70859 -35.77390 -35.24996 -34.94285 -32.82047 -32.51263 -30.00002 -29.74902 -27.63656 -26.87795 -26.46462 -25.11516 -23.50032 -23.09706 -22.03174 -21.18682 -20.60584 -20.28812 -19.49420 -18.40678 -17.99350 -17.17186 -17.06717 -16.63600 -16.12111 -16.06377 -15.87001 -15.77872 -15.49127 -14.96559 -14.86643 -14.76897 -14.56179 -14.33633 -14.15076 -14.01019 -13.57798 -13.43542 -13.34701 -13.15398 -13.00964 -12.92772 -12.90017 -12.83796 -12.55222 -12.48810 -12.24838 -12.21476 -11.97596 -11.78560 -11.52698 -11.48627 -11.34374 -11.27861 -11.12484 -10.96649 -10.87668 -10.51940 -10.00450 -9.80108 -9.27469 -7.95885 -5.27203 1.36880 1.41057 1.45197 1.65175 1.84600 2.20844 2.50195 2.56323 3.35857 3.53507 3.63314 3.69247 3.74444 3.86014 3.94836 3.99201 4.00524 4.17021 4.23719 4.26566 4.27960 4.41706 4.55656 4.58478 4.60820 4.70654 4.72679 4.74036 4.80894 4.86907 4.88713 4.89568 4.93787 5.04532 5.07207 5.08816 5.14274 5.14723 5.20349 5.23023 5.31125 5.38506 5.52501 5.54055 5.60922 5.67118 5.75334 5.87159 6.27022 6.62108 6.74609 7.12264 7.30641 7.56791 7.87281 8.05861 9.25129 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010099 B = 0.004036 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2772.009061 B = 6936.366017 C = 9181.353540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.507 3.493 3 O -0.573 6.573 4 N -0.703 5.703 5 C 0.143 3.857 6 H 0.142 0.858 7 C -0.119 4.119 8 C -0.098 4.098 9 C -0.123 4.123 10 C -0.135 4.135 11 C -0.151 4.151 12 C 0.491 3.509 13 O -0.560 6.560 14 N -0.717 5.717 15 C 0.124 3.876 16 C 0.178 3.822 17 H 0.063 0.937 18 N -0.746 5.746 19 C -0.201 4.201 20 H 0.072 0.928 21 C -0.052 4.052 22 N -0.980 5.980 23 Si 0.934 3.066 24 H -0.294 1.294 25 H -0.258 1.258 26 H -0.300 1.300 27 C -0.106 4.106 28 C -0.133 4.133 29 C -0.140 4.140 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.422 0.578 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.112 0.888 37 H 0.056 0.944 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.410 0.590 44 H 0.044 0.956 45 H 0.082 0.918 46 H 0.360 0.640 47 H 0.254 0.746 48 H 0.055 0.945 49 H 0.042 0.958 50 H 0.051 0.949 51 H 0.047 0.953 52 H 0.058 0.942 53 H 0.060 0.940 54 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.096 -4.685 2.674 23.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.296 3.704 3 O -0.451 6.451 4 N -0.357 5.357 5 C 0.033 3.967 6 H 0.160 0.840 7 C -0.158 4.158 8 C -0.116 4.116 9 C -0.160 4.160 10 C -0.172 4.172 11 C -0.189 4.189 12 C 0.277 3.723 13 O -0.437 6.437 14 N -0.370 5.370 15 C -0.001 4.001 16 C 0.070 3.930 17 H 0.081 0.919 18 N -0.389 5.389 19 C -0.332 4.332 20 H 0.090 0.910 21 C -0.244 4.244 22 N -0.631 5.631 23 Si 0.764 3.236 24 H -0.222 1.222 25 H -0.183 1.183 26 H -0.227 1.227 27 C -0.128 4.128 28 C -0.191 4.191 29 C -0.198 4.198 30 H 0.134 0.866 31 H 0.096 0.904 32 H 0.121 0.879 33 H 0.260 0.740 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.130 0.870 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.246 0.754 44 H 0.062 0.938 45 H 0.100 0.900 46 H 0.193 0.807 47 H 0.063 0.937 48 H 0.073 0.927 49 H 0.061 0.939 50 H 0.070 0.930 51 H 0.066 0.934 52 H 0.077 0.923 53 H 0.080 0.920 54 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.062 -3.551 2.205 23.438 hybrid contribution 0.857 0.685 1.012 1.493 sum -22.205 -2.866 3.217 22.619 Atomic orbital electron populations 1.21897 0.88992 1.05367 1.06137 1.21346 0.91779 0.83197 0.74086 1.90712 1.71648 1.33383 1.49356 1.45487 1.04540 1.09551 1.76156 1.20840 0.82853 1.01792 0.91191 0.84019 1.21846 1.00290 1.00210 0.93480 1.22532 0.97150 1.00238 0.91702 1.22850 0.96336 1.01078 0.95757 1.22810 0.95385 1.02475 0.96537 1.22988 0.98213 1.00409 0.97267 1.21554 0.81731 0.82402 0.86629 1.90692 1.57043 1.37243 1.58738 1.46020 1.13812 1.47575 1.29624 1.21564 0.94693 0.96034 0.87810 1.20648 0.87439 0.98315 0.86588 0.91935 1.42841 1.26410 1.45074 1.24529 1.18948 0.97553 1.12698 1.03985 0.91005 1.25166 0.97508 1.01388 1.00319 1.69830 1.17768 1.45702 1.29800 0.85740 0.78656 0.79798 0.79413 1.22174 1.18295 1.22734 1.21617 0.95853 0.99529 0.95792 1.21715 0.96520 1.00032 1.00791 1.21841 0.99290 1.02036 0.96617 0.86596 0.90382 0.87879 0.74020 0.92259 0.92097 0.86952 0.92486 0.89452 0.88548 0.91815 0.91333 0.92165 0.75401 0.93782 0.90029 0.80682 0.93696 0.92661 0.93897 0.93038 0.93380 0.92256 0.92049 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 10.32 71.24 0.74 -1.50 16 2 C 0.51 11.93 5.85 87.66 0.51 12.45 16 3 O -0.57 -20.53 12.94 19.41 0.25 -20.28 16 4 N -0.70 -12.37 4.34 -446.08 -1.94 -14.31 16 5 C 0.14 3.15 3.00 44.25 0.13 3.29 16 6 H 0.14 2.11 8.14 -2.38 -0.02 2.09 16 7 C -0.12 -3.02 4.41 30.59 0.13 -2.88 16 8 C -0.10 -1.81 3.52 -10.26 -0.04 -1.85 16 9 C -0.12 -1.98 6.39 31.12 0.20 -1.78 16 10 C -0.13 -2.11 8.08 31.12 0.25 -1.86 16 11 C -0.15 -3.08 7.64 31.12 0.24 -2.85 16 12 C 0.49 15.30 6.82 87.66 0.60 15.90 16 13 O -0.56 -21.80 13.68 19.45 0.27 -21.53 16 14 N -0.72 -21.92 5.39 -463.07 -2.49 -24.42 16 15 C 0.12 3.95 4.73 86.38 0.41 4.36 16 16 C 0.18 6.13 2.18 44.99 0.10 6.23 16 17 H 0.06 2.18 8.08 -2.39 -0.02 2.16 16 18 N -0.75 -31.57 4.24 -322.95 -1.37 -32.94 16 19 C -0.20 -10.29 8.05 84.03 0.68 -9.61 16 20 H 0.07 4.00 7.62 -2.91 -0.02 3.98 16 21 C -0.05 -2.90 5.50 84.86 0.47 -2.43 16 22 N -0.98 -59.91 13.97 21.65 0.30 -59.61 16 23 Si 0.93 44.91 27.74 68.60 1.90 46.81 16 24 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 25 H -0.26 -11.43 6.51 99.48 0.65 -10.78 16 26 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 27 C -0.11 -3.42 2.69 -10.79 -0.03 -3.45 16 28 C -0.13 -4.75 8.26 71.98 0.59 -4.16 16 29 C -0.14 -3.52 8.84 71.98 0.64 -2.88 16 30 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 1.26 8.12 -2.39 -0.02 1.24 16 32 H 0.10 1.02 8.14 -2.39 -0.02 1.01 16 33 H 0.42 3.72 8.83 -92.71 -0.82 2.90 16 34 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.06 1.98 5.74 -2.39 -0.01 1.96 16 36 H 0.11 1.60 8.13 -2.39 -0.02 1.58 16 37 H 0.06 1.20 7.62 -2.38 -0.02 1.18 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.06 1.00 8.14 -2.38 -0.02 0.99 16 41 H 0.07 1.36 8.14 -2.38 -0.02 1.35 16 42 H 0.06 1.45 8.10 -2.39 -0.02 1.43 16 43 H 0.41 12.14 8.14 -92.71 -0.75 11.39 16 44 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 45 H 0.08 2.41 6.71 -2.39 -0.02 2.39 16 46 H 0.36 15.69 5.65 -92.71 -0.52 15.17 16 47 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 48 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.04 1.50 8.14 -2.39 -0.02 1.49 16 50 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 51 H 0.05 2.10 6.01 -2.39 -0.01 2.09 16 52 H 0.06 1.41 6.54 -2.39 -0.02 1.39 16 53 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 54 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -76.79 416.92 1.28 -75.50 By element: Atomic # 1 Polarization: 45.05 SS G_CDS: -1.26 Total: 43.79 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 5.62 Total: 6.98 kcal Atomic # 7 Polarization: -125.77 SS G_CDS: -5.50 Total: -131.27 kcal Atomic # 8 Polarization: -42.33 SS G_CDS: 0.52 Total: -41.81 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.90 Total: 46.81 kcal Total: -76.79 1.28 -75.50 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496598671.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.785 kcal (2) G-P(sol) polarization free energy of solvation -76.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds