Wall clock time and date at job start Tue Mar 31 2020 22:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 119.99926 * 2 1 4 4 N 1.34775 * 119.99773 * 179.97438 * 2 1 3 5 5 C 1.46499 * 120.00012 * 180.02562 * 4 2 1 6 6 H 1.09002 * 109.47391 * 180.02562 * 5 4 2 7 7 C 1.53004 * 109.47310 * 59.99694 * 5 4 2 8 8 C 1.53005 * 109.46476 * 65.00430 * 7 5 4 9 9 C 1.53788 * 113.61309 * 272.49716 * 8 7 5 10 10 C 1.53777 * 87.07862 * 220.02021 * 9 8 7 11 11 C 1.53777 * 87.08499 * 25.43243 * 10 9 8 12 12 C 1.50708 * 109.47122 * 300.00054 * 5 4 2 13 13 O 1.21287 * 119.99820 * 20.00239 * 12 5 4 14 14 N 1.34771 * 120.00043 * 199.99385 * 12 5 4 15 15 C 1.46500 * 119.99839 * 180.02562 * 14 12 5 16 16 C 1.53005 * 109.47274 * 180.02562 * 15 14 12 17 17 H 1.08999 * 109.46720 * 295.00416 * 16 15 14 18 18 N 1.46500 * 109.46809 * 54.99757 * 16 15 14 19 19 C 1.36937 * 119.99778 * 205.00195 * 18 16 15 20 20 H 1.08004 * 120.00520 * 0.02562 * 19 18 16 21 21 C 1.38813 * 120.00330 * 180.02562 * 19 18 16 22 22 N 1.31625 * 119.99602 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00500 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47359 * 59.99102 * 23 21 19 25 25 H 1.48497 * 109.47318 * 179.97438 * 23 21 19 26 26 H 1.48508 * 109.46750 * 299.99502 * 23 21 19 27 27 C 1.52990 * 109.47416 * 174.99926 * 16 15 14 28 28 C 1.53002 * 109.47104 * 59.99624 * 27 16 15 29 29 C 1.53005 * 109.47416 * 179.97438 * 27 16 15 30 30 H 1.09002 * 109.47152 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.46980 * 240.00238 * 1 2 3 32 32 H 1.09004 * 109.47113 * 120.00219 * 1 2 3 33 33 H 0.96998 * 120.00166 * 0.02562 * 4 2 1 34 34 H 1.08996 * 109.47803 * 184.99918 * 7 5 4 35 35 H 1.09001 * 109.47328 * 305.00948 * 7 5 4 36 36 H 1.08998 * 112.85405 * 43.80396 * 8 7 5 37 37 H 1.09003 * 113.61269 * 334.56767 * 9 8 7 38 38 H 1.08998 * 113.61578 * 105.47275 * 9 8 7 39 39 H 1.08998 * 113.61453 * 270.88206 * 10 9 8 40 40 H 1.09001 * 113.61423 * 139.98384 * 10 9 8 41 41 H 1.09000 * 113.61777 * 220.01636 * 11 10 9 42 42 H 1.09000 * 113.69015 * 89.12280 * 11 10 9 43 43 H 0.97001 * 120.00521 * 0.02562 * 14 12 5 44 44 H 1.08999 * 109.47199 * 300.00283 * 15 14 12 45 45 H 1.08998 * 109.47114 * 60.00539 * 15 14 12 46 46 H 0.96997 * 120.00777 * 25.00205 * 18 16 15 47 47 H 0.96997 * 119.99513 * 180.02562 * 22 21 19 48 48 H 1.09008 * 109.47432 * 300.00084 * 27 16 15 49 49 H 1.09005 * 109.46699 * 60.00466 * 28 27 16 50 50 H 1.09004 * 109.47237 * 179.97438 * 28 27 16 51 51 H 1.08993 * 109.47298 * 300.00513 * 28 27 16 52 52 H 1.08993 * 109.46708 * 59.99701 * 29 27 16 53 53 H 1.08995 * 109.47136 * 179.97438 * 29 27 16 54 54 H 1.09000 * 109.46389 * 300.00062 * 29 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6458 -1.1673 0.0011 6 1 4.0092 -2.1949 0.0010 7 6 4.1554 -0.4457 1.2503 8 6 3.7502 -1.2357 2.4964 9 6 2.3567 -0.8678 3.0329 10 6 2.9577 -0.9765 4.4441 11 6 4.3192 -0.6590 3.8035 12 6 4.1487 -0.4571 -1.2294 13 8 3.4205 0.3043 -1.8302 14 7 5.4076 -0.6680 -1.6620 15 6 5.8965 0.0228 -2.8578 16 6 7.3444 -0.3905 -3.1294 17 1 7.9803 -0.0428 -2.3152 18 7 7.4261 -1.8502 -3.2235 19 6 8.6066 -2.4888 -2.9521 20 1 9.4775 -1.9165 -2.6683 21 6 8.6843 -3.8719 -3.0418 22 7 7.6229 -4.5695 -3.3872 23 14 10.2945 -4.7431 -2.6710 24 1 10.7055 -4.4505 -1.2743 25 1 10.1145 -6.2078 -2.8370 26 1 11.3435 -4.2636 -3.6064 27 6 7.8144 0.2325 -4.4453 28 6 7.7290 1.7569 -4.3470 29 6 9.2626 -0.1803 -4.7165 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5138 0.8900 32 1 -0.3633 -0.5139 -0.8900 33 1 1.6959 -2.0072 0.0005 34 1 5.2417 -0.3675 1.2072 35 1 3.7208 0.5529 1.2959 36 1 3.9082 -2.3086 2.3874 37 1 2.0400 0.1415 2.7697 38 1 1.5957 -1.6194 2.8233 39 1 2.8979 -1.9788 4.8682 40 1 2.6067 -0.2044 5.1289 41 1 5.1425 -1.2420 4.2161 42 1 4.5403 0.4071 3.7505 43 1 5.9899 -1.2771 -1.1816 44 1 5.2758 -0.2465 -3.7123 45 1 5.8495 1.1002 -2.6997 46 1 6.6440 -2.3644 -3.4780 47 1 7.6770 -5.5360 -3.4495 48 1 7.1785 -0.1152 -5.2595 49 1 8.3650 2.1047 -3.5328 50 1 8.0643 2.2009 -5.2844 51 1 6.6976 2.0514 -4.1535 52 1 9.3237 -1.2663 -4.7864 53 1 9.5972 0.2632 -5.6543 54 1 9.8981 0.1678 -3.9023 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496598672.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:30 Heat of formation + Delta-G solvation = -79.309442 kcal Electronic energy + Delta-G solvation = -31438.633187 eV Core-core repulsion = 27409.950475 eV Total energy + Delta-G solvation = -4028.682712 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.62889 -39.93305 -39.35423 -38.60561 -35.73910 -35.19567 -34.90146 -32.67157 -32.07799 -29.94484 -29.62143 -27.55185 -26.81562 -26.41739 -25.35220 -23.52663 -23.09487 -21.99061 -21.06778 -20.43263 -20.23869 -19.14492 -18.38496 -17.97327 -17.16354 -16.88471 -16.65469 -16.05514 -16.01388 -15.85609 -15.64219 -15.41101 -15.10776 -14.92360 -14.62615 -14.52229 -14.27345 -13.98324 -13.76685 -13.46635 -13.41071 -13.29058 -13.12945 -12.92420 -12.87982 -12.79585 -12.70531 -12.48563 -12.44729 -12.27808 -12.16731 -12.01989 -11.76717 -11.48348 -11.44516 -11.28448 -11.23816 -11.08045 -10.92456 -10.79792 -10.49867 -9.95290 -9.76514 -8.93726 -7.84968 -5.11937 1.52736 1.53943 1.58874 1.67669 1.89168 2.24942 2.56666 2.62488 3.47575 3.66121 3.72983 3.78573 3.86561 3.94048 3.99189 4.02582 4.05113 4.19647 4.28677 4.30844 4.31413 4.44900 4.56722 4.61909 4.65897 4.71944 4.76710 4.78965 4.84287 4.90999 4.91690 4.93271 4.97493 5.06469 5.09958 5.11801 5.13361 5.16864 5.23825 5.25170 5.32342 5.43034 5.54494 5.57075 5.63279 5.64822 5.70849 5.76442 6.34762 6.67349 6.74299 7.34533 7.43260 7.56394 8.13267 8.40171 9.37541 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010328 B = 0.003294 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.501921 B = 8499.090678 C = 9920.344447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.508 3.492 3 O -0.569 6.569 4 N -0.706 5.706 5 C 0.141 3.859 6 H 0.129 0.871 7 C -0.112 4.112 8 C -0.101 4.101 9 C -0.127 4.127 10 C -0.137 4.137 11 C -0.141 4.141 12 C 0.492 3.508 13 O -0.564 6.564 14 N -0.712 5.712 15 C 0.127 3.873 16 C 0.176 3.824 17 H 0.055 0.945 18 N -0.725 5.725 19 C -0.217 4.217 20 H 0.077 0.923 21 C -0.067 4.067 22 N -0.965 5.965 23 Si 0.957 3.043 24 H -0.279 1.279 25 H -0.303 1.303 26 H -0.285 1.285 27 C -0.106 4.106 28 C -0.141 4.141 29 C -0.134 4.134 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.098 0.902 33 H 0.419 0.581 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.104 0.896 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.409 0.591 44 H 0.043 0.957 45 H 0.069 0.931 46 H 0.373 0.627 47 H 0.247 0.753 48 H 0.049 0.951 49 H 0.058 0.942 50 H 0.061 0.939 51 H 0.053 0.947 52 H 0.050 0.950 53 H 0.050 0.950 54 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.566 6.012 12.486 18.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.297 3.703 3 O -0.447 6.447 4 N -0.360 5.360 5 C 0.032 3.968 6 H 0.147 0.853 7 C -0.151 4.151 8 C -0.119 4.119 9 C -0.164 4.164 10 C -0.175 4.175 11 C -0.179 4.179 12 C 0.277 3.723 13 O -0.442 6.442 14 N -0.364 5.364 15 C 0.002 3.998 16 C 0.067 3.933 17 H 0.073 0.927 18 N -0.364 5.364 19 C -0.349 4.349 20 H 0.095 0.905 21 C -0.259 4.259 22 N -0.616 5.616 23 Si 0.788 3.212 24 H -0.205 1.205 25 H -0.229 1.229 26 H -0.212 1.212 27 C -0.128 4.128 28 C -0.199 4.199 29 C -0.191 4.191 30 H 0.100 0.900 31 H 0.134 0.866 32 H 0.117 0.883 33 H 0.256 0.744 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.122 0.878 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.246 0.754 44 H 0.062 0.938 45 H 0.087 0.913 46 H 0.205 0.795 47 H 0.056 0.944 48 H 0.068 0.932 49 H 0.077 0.923 50 H 0.080 0.920 51 H 0.072 0.928 52 H 0.069 0.931 53 H 0.069 0.931 54 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.486 7.283 12.116 18.214 hybrid contribution 0.862 -1.411 -0.328 1.686 sum -10.623 5.872 11.787 16.920 Atomic orbital electron populations 1.21903 0.89147 1.05461 1.05964 1.21295 0.91715 0.83147 0.74126 1.90682 1.71585 1.33099 1.49376 1.45541 1.04782 1.09551 1.76129 1.20859 0.82713 1.01422 0.91853 0.85306 1.21807 1.00788 0.99955 0.92512 1.22523 0.97189 0.99991 0.92236 1.22872 0.96457 1.00996 0.96122 1.22809 0.95953 1.02340 0.96349 1.22937 0.97856 1.00747 0.96333 1.21552 0.81699 0.82275 0.86753 1.90685 1.56906 1.37678 1.58949 1.45956 1.13987 1.47212 1.29273 1.21489 0.94988 0.96292 0.86985 1.20622 0.92557 0.84315 0.95832 0.92741 1.42518 1.10889 1.00833 1.82195 1.19415 0.90212 0.89403 1.35831 0.90509 1.25301 0.99429 0.97266 1.03933 1.69794 1.29577 1.05503 1.56762 0.85462 0.80580 0.77079 0.78122 1.20479 1.22946 1.21196 1.21628 0.97265 0.95610 0.98297 1.21848 1.01546 0.94336 1.02122 1.21724 0.95452 1.01838 1.00074 0.90037 0.86621 0.88306 0.74403 0.91116 0.91707 0.87820 0.92221 0.90267 0.89007 0.91609 0.90953 0.91330 0.75440 0.93837 0.91326 0.79519 0.94406 0.93245 0.92280 0.92006 0.92824 0.93053 0.93081 0.93433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 10.32 71.24 0.74 -1.85 16 2 C 0.51 12.94 5.85 87.66 0.51 13.46 16 3 O -0.57 -20.66 12.94 19.43 0.25 -20.41 16 4 N -0.71 -14.78 4.34 -446.08 -1.94 -16.72 16 5 C 0.14 3.50 3.00 44.25 0.13 3.63 16 6 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 7 C -0.11 -2.67 4.41 30.60 0.13 -2.53 16 8 C -0.10 -1.80 3.52 -10.26 -0.04 -1.84 16 9 C -0.13 -2.05 6.39 31.12 0.20 -1.86 16 10 C -0.14 -2.00 8.08 31.12 0.25 -1.75 16 11 C -0.14 -2.45 7.64 31.12 0.24 -2.21 16 12 C 0.49 16.79 6.82 87.66 0.60 17.39 16 13 O -0.56 -23.69 13.68 19.41 0.27 -23.42 16 14 N -0.71 -24.03 5.39 -463.05 -2.49 -26.53 16 15 C 0.13 4.50 4.73 86.38 0.41 4.91 16 16 C 0.18 6.43 2.18 44.99 0.10 6.53 16 17 H 0.05 2.01 8.08 -2.39 -0.02 1.99 16 18 N -0.72 -32.50 4.44 -322.94 -1.43 -33.93 16 19 C -0.22 -10.71 7.57 84.03 0.64 -10.08 16 20 H 0.08 3.68 7.40 -2.91 -0.02 3.66 16 21 C -0.07 -3.53 5.50 84.86 0.47 -3.06 16 22 N -0.97 -54.96 13.06 21.65 0.28 -54.68 16 23 Si 0.96 43.49 29.55 68.60 2.03 45.52 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 26 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 27 C -0.11 -3.60 2.69 -10.79 -0.03 -3.63 16 28 C -0.14 -3.85 8.84 71.98 0.64 -3.22 16 29 C -0.13 -4.67 8.26 71.98 0.59 -4.08 16 30 H 0.08 1.41 8.12 -2.39 -0.02 1.39 16 31 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.42 5.64 8.83 -92.71 -0.82 4.82 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 1.96 5.75 -2.39 -0.01 1.95 16 36 H 0.10 1.61 8.13 -2.39 -0.02 1.59 16 37 H 0.06 1.22 7.62 -2.39 -0.02 1.21 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.07 1.33 8.10 -2.39 -0.02 1.31 16 43 H 0.41 13.57 8.14 -92.71 -0.75 12.82 16 44 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.07 2.37 6.71 -2.39 -0.02 2.35 16 46 H 0.37 18.59 7.80 -92.71 -0.72 17.87 16 47 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 48 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 49 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 50 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 51 H 0.05 1.45 6.54 -2.39 -0.02 1.44 16 52 H 0.05 2.16 6.01 -2.39 -0.01 2.15 16 53 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 54 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -70.50 420.04 1.14 -69.36 By element: Atomic # 1 Polarization: 52.39 SS G_CDS: -1.39 Total: 51.00 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 5.58 Total: 9.82 kcal Atomic # 7 Polarization: -126.28 SS G_CDS: -5.58 Total: -131.86 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: 0.52 Total: -43.83 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -70.50 1.14 -69.36 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496598672.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.949 kcal (2) G-P(sol) polarization free energy of solvation -70.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds