Wall clock time and date at job start Tue Mar 31 2020 23:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47087 * 2 1 4 4 C 1.53006 * 109.47148 * 119.99991 * 2 1 3 5 5 H 1.09004 * 109.46901 * 300.00262 * 4 2 1 6 6 C 1.52993 * 109.47133 * 180.02562 * 4 2 1 7 7 N 1.46493 * 109.47346 * 185.00123 * 6 4 2 8 8 C 1.34781 * 120.00398 * 180.02562 * 7 6 4 9 9 O 1.21273 * 119.99559 * 359.97438 * 8 7 6 10 10 C 1.50703 * 120.00160 * 179.97438 * 8 7 6 11 11 N 1.46492 * 109.47199 * 179.97438 * 10 8 7 12 12 C 1.34778 * 120.00064 * 180.02562 * 11 10 8 13 13 O 1.21273 * 120.00109 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.99809 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.47359 * 299.99827 * 14 12 11 16 16 C 1.53006 * 109.47314 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.46695 * 60.00352 * 16 15 14 18 18 C 1.53003 * 109.47238 * 299.99756 * 17 16 15 19 19 C 1.52999 * 109.47117 * 60.00202 * 18 17 16 20 20 N 1.46493 * 109.46887 * 59.99945 * 4 2 1 21 21 C 1.36936 * 120.00314 * 274.99849 * 20 4 2 22 22 H 1.08001 * 120.00159 * 0.02562 * 21 20 4 23 23 C 1.38811 * 119.99842 * 180.02562 * 21 20 4 24 24 N 1.31624 * 119.99540 * 179.72505 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.08995 * 109.47266 * 299.99829 * 1 2 3 30 30 H 1.09000 * 109.47204 * 59.99887 * 1 2 3 31 31 H 1.09003 * 109.47147 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47266 * 240.00171 * 2 1 3 33 33 H 1.08997 * 109.47066 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47191 * 300.00121 * 3 2 1 35 35 H 1.09004 * 109.47044 * 59.99688 * 3 2 1 36 36 H 1.09009 * 109.47018 * 304.99771 * 6 4 2 37 37 H 1.09002 * 109.47579 * 64.99441 * 6 4 2 38 38 H 0.96998 * 119.99959 * 359.97438 * 7 6 4 39 39 H 1.08997 * 109.47068 * 300.00505 * 10 8 7 40 40 H 1.09008 * 109.46877 * 59.99887 * 10 8 7 41 41 H 0.97000 * 120.00021 * 359.97438 * 11 10 8 42 42 H 1.09003 * 109.47704 * 60.00086 * 14 12 11 43 43 H 1.09000 * 109.47512 * 300.00292 * 15 14 12 44 44 H 1.08999 * 109.47269 * 60.00272 * 15 14 12 45 45 H 1.09000 * 109.47095 * 300.00578 * 16 15 14 46 46 H 1.09001 * 109.47047 * 180.02562 * 16 15 14 47 47 H 1.09004 * 109.46782 * 180.02562 * 17 16 15 48 48 H 1.08999 * 109.47686 * 60.00206 * 17 16 15 49 49 H 1.09000 * 109.47462 * 300.00331 * 18 17 16 50 50 H 1.09002 * 109.47053 * 180.02562 * 18 17 16 51 51 H 1.08995 * 109.47415 * 180.02562 * 19 18 17 52 52 H 1.09000 * 109.46849 * 59.99754 * 19 18 17 53 53 H 0.97000 * 120.00040 * 94.99981 * 20 4 2 54 54 H 0.96999 * 119.99889 * 180.27497 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 3.5699 -0.7207 1.2496 7 7 4.0584 -1.5129 2.3809 8 6 5.3835 -1.6533 2.5833 9 8 6.1715 -1.1242 1.8284 10 6 5.8859 -2.4678 3.7475 11 7 7.3508 -2.4674 3.7477 12 6 8.0247 -3.1368 4.7038 13 8 7.4184 -3.7400 5.5637 14 6 9.5317 -3.1359 4.7044 15 6 10.0426 -3.7447 3.3970 16 6 11.5727 -3.7431 3.3973 17 6 12.0832 -4.5703 4.5788 18 6 11.5723 -3.9616 5.8863 19 6 10.0423 -3.9630 5.8859 20 7 1.5517 -2.1024 1.2492 21 6 0.3101 -2.3897 1.7504 22 1 -0.3093 -1.5980 2.1454 23 6 -0.1523 -3.6986 1.7508 24 7 -1.3435 -3.9754 2.2375 25 14 0.9192 -5.0681 1.0684 26 1 0.6410 -5.2389 -0.3803 27 1 2.3499 -4.7193 1.2599 28 1 0.6186 -6.3346 1.7829 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 3.9336 -1.1548 0.3182 37 1 3.9330 0.3032 1.3393 38 1 3.4281 -1.9358 2.9849 39 1 5.5218 -2.0337 4.6786 40 1 5.5232 -3.4919 3.6578 41 1 7.8358 -1.9859 3.0593 42 1 9.8945 -2.1120 4.7945 43 1 9.6800 -4.7686 3.3069 44 1 9.6793 -3.1552 2.5553 45 1 11.9349 -2.7190 3.4873 46 1 11.9366 -4.1765 2.4657 47 1 13.1732 -4.5689 4.5793 48 1 11.7209 -5.5944 4.4890 49 1 11.9346 -2.9375 5.9762 50 1 11.9364 -4.5506 6.7280 51 1 9.6783 -3.5290 6.8171 52 1 9.6800 -4.9871 5.7960 53 1 2.1078 -2.8135 0.8942 54 1 -1.6651 -4.8906 2.2415 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496630863.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:42 Heat of formation + Delta-G solvation = -118.977807 kcal Electronic energy + Delta-G solvation = -30051.483868 eV Core-core repulsion = 26021.081006 eV Total energy + Delta-G solvation = -4030.402861 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.51782 -40.66003 -38.95383 -38.47360 -35.70346 -35.32099 -34.94368 -32.74234 -32.31197 -31.63375 -30.36687 -28.38041 -27.53917 -25.33026 -24.37826 -23.47059 -23.18332 -21.69168 -21.51250 -20.95942 -20.62470 -19.63828 -18.75326 -17.67893 -17.23598 -17.19955 -16.86972 -16.59079 -16.15304 -15.93476 -15.61926 -15.23536 -15.05090 -14.98929 -14.92660 -14.70228 -14.62487 -14.36533 -14.14786 -13.78151 -13.55808 -13.43392 -13.22854 -13.08960 -12.98127 -12.91179 -12.83225 -12.52132 -12.25333 -12.24415 -12.04657 -11.96778 -11.77769 -11.58324 -11.48714 -11.36284 -11.32947 -11.16102 -11.01612 -10.86884 -10.75559 -10.31703 -10.08400 -9.27666 -7.95686 -5.27792 1.38636 1.40550 1.42815 1.47859 1.55283 1.75276 2.43082 2.51224 3.35838 3.50973 3.56733 3.65142 3.74483 3.77905 3.85880 4.20106 4.22196 4.24973 4.27498 4.28513 4.30337 4.37608 4.44524 4.44997 4.55258 4.59179 4.61670 4.70164 4.72361 4.91494 4.95848 4.96670 5.04898 5.11036 5.15260 5.17056 5.20099 5.24479 5.24621 5.25772 5.29970 5.36019 5.40070 5.46067 5.55718 5.62697 5.76420 5.87520 6.26848 6.40305 6.43891 7.03736 7.13020 7.13333 7.87499 8.05611 9.25324 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013639 B = 0.002348 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.481207 B =11920.062180 C =13174.150334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.104 4.104 3 C -0.141 4.141 4 C 0.174 3.826 5 H 0.059 0.941 6 C 0.120 3.880 7 N -0.711 5.711 8 C 0.513 3.487 9 O -0.569 6.569 10 C 0.099 3.901 11 N -0.711 5.711 12 C 0.515 3.485 13 O -0.581 6.581 14 C -0.097 4.097 15 C -0.110 4.110 16 C -0.114 4.114 17 C -0.123 4.123 18 C -0.115 4.115 19 C -0.099 4.099 20 N -0.746 5.746 21 C -0.201 4.201 22 H 0.068 0.932 23 C -0.061 4.061 24 N -0.983 5.983 25 Si 0.940 3.060 26 H -0.289 1.289 27 H -0.252 1.252 28 H -0.306 1.306 29 H 0.038 0.962 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.413 0.587 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.417 0.583 42 H 0.119 0.881 43 H 0.055 0.945 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.054 0.946 49 H 0.074 0.926 50 H 0.069 0.931 51 H 0.058 0.942 52 H 0.051 0.949 53 H 0.363 0.637 54 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.015 6.379 1.481 27.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.126 4.126 3 C -0.199 4.199 4 C 0.065 3.935 5 H 0.077 0.923 6 C -0.004 4.004 7 N -0.362 5.362 8 C 0.299 3.701 9 O -0.449 6.449 10 C -0.029 4.029 11 N -0.366 5.366 12 C 0.303 3.697 13 O -0.460 6.460 14 C -0.118 4.118 15 C -0.148 4.148 16 C -0.152 4.152 17 C -0.160 4.160 18 C -0.152 4.152 19 C -0.137 4.137 20 N -0.389 5.389 21 C -0.332 4.332 22 H 0.086 0.914 23 C -0.252 4.252 24 N -0.634 5.634 25 Si 0.770 3.230 26 H -0.216 1.216 27 H -0.176 1.176 28 H -0.233 1.233 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.249 0.751 39 H 0.126 0.874 40 H 0.115 0.885 41 H 0.256 0.744 42 H 0.137 0.863 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.094 0.906 48 H 0.073 0.927 49 H 0.093 0.907 50 H 0.088 0.912 51 H 0.077 0.923 52 H 0.070 0.930 53 H 0.196 0.804 54 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 26.918 6.382 1.644 27.713 hybrid contribution -0.671 -1.363 -0.373 1.565 sum 26.247 5.019 1.271 26.752 Atomic orbital electron populations 1.21727 0.95899 1.01634 0.99975 1.21604 0.95843 0.96638 0.98508 1.21856 1.01211 0.94717 1.02110 1.20699 0.90525 0.84997 0.97248 0.92343 1.21730 0.93766 0.96285 0.88638 1.45957 1.06650 1.52609 1.30953 1.20556 0.82683 0.80748 0.86073 1.90648 1.55703 1.50180 1.48384 1.21048 0.82685 1.01372 0.97753 1.45742 1.05655 1.53730 1.31445 1.21336 0.91488 0.77052 0.79830 1.90700 1.71423 1.45005 1.38881 1.21384 0.88236 1.03558 0.98625 1.21554 0.97536 1.00891 0.94854 1.21524 0.93325 1.01466 0.98857 1.21587 1.00980 0.99127 0.94332 1.21541 0.93409 1.02114 0.98161 1.21332 0.96507 0.99400 0.96439 1.42812 1.16910 1.04459 1.74690 1.18920 0.91889 0.92868 1.29545 0.91386 1.25296 0.97651 0.99413 1.02847 1.69852 1.20171 1.19103 1.54285 0.85637 0.80082 0.79718 0.77574 1.21647 1.17627 1.23344 0.94277 0.93045 0.93461 0.91980 0.91618 0.92108 0.92603 0.91888 0.89185 0.75064 0.87434 0.88501 0.74407 0.86303 0.92617 0.90705 0.90484 0.90882 0.90604 0.92679 0.90702 0.91238 0.92315 0.93036 0.80383 0.93774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 8.26 71.98 0.59 -4.01 16 2 C -0.10 -3.05 2.69 -10.79 -0.03 -3.08 16 3 C -0.14 -3.15 8.84 71.98 0.64 -2.51 16 4 C 0.17 5.48 2.18 44.99 0.10 5.57 16 5 H 0.06 1.94 8.08 -2.39 -0.02 1.92 16 6 C 0.12 3.21 4.73 86.38 0.41 3.62 16 7 N -0.71 -18.85 5.39 -463.07 -2.49 -21.34 16 8 C 0.51 13.27 7.90 87.66 0.69 13.97 16 9 O -0.57 -16.79 15.67 -3.01 -0.05 -16.84 16 10 C 0.10 2.29 6.15 85.64 0.53 2.82 16 11 N -0.71 -15.21 5.42 -466.80 -2.53 -17.74 16 12 C 0.51 11.86 7.15 87.66 0.63 12.49 16 13 O -0.58 -18.11 15.98 -3.01 -0.05 -18.16 16 14 C -0.10 -1.53 2.52 -11.54 -0.03 -1.56 16 15 C -0.11 -1.49 5.10 30.60 0.16 -1.33 16 16 C -0.11 -1.12 5.92 30.60 0.18 -0.94 16 17 C -0.12 -1.25 5.92 30.59 0.18 -1.07 16 18 C -0.11 -1.29 5.92 30.59 0.18 -1.11 16 19 C -0.10 -1.64 4.49 30.60 0.14 -1.51 16 20 N -0.75 -29.82 4.24 -322.95 -1.37 -31.19 16 21 C -0.20 -10.13 8.05 84.03 0.68 -9.46 16 22 H 0.07 3.78 7.62 -2.91 -0.02 3.75 16 23 C -0.06 -3.35 5.50 84.86 0.47 -2.89 16 24 N -0.98 -60.36 13.97 21.65 0.30 -60.06 16 25 Si 0.94 43.78 27.74 68.60 1.90 45.69 16 26 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 27 H -0.25 -10.42 6.51 99.48 0.65 -9.77 16 28 H -0.31 -14.92 7.11 99.48 0.71 -14.21 16 29 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 2.01 6.01 -2.39 -0.01 1.99 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.06 1.29 6.54 -2.39 -0.02 1.28 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 35 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.09 2.16 6.71 -2.39 -0.02 2.14 16 38 H 0.41 11.27 8.14 -92.71 -0.75 10.52 16 39 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 41 H 0.42 8.00 6.85 -92.71 -0.64 7.36 16 42 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.07 0.93 7.56 -2.39 -0.02 0.91 16 45 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.08 0.59 8.14 -2.39 -0.02 0.58 16 48 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 49 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 52 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 53 H 0.36 14.53 5.66 -92.71 -0.52 14.00 16 54 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -67.76 418.45 0.14 -67.62 By element: Atomic # 1 Polarization: 44.10 SS G_CDS: -1.08 Total: 43.02 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 5.51 Total: 9.00 kcal Atomic # 7 Polarization: -124.24 SS G_CDS: -6.09 Total: -130.33 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -0.10 Total: -35.00 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.90 Total: 45.69 kcal Total: -67.76 0.14 -67.62 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496630863.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.357 kcal (2) G-P(sol) polarization free energy of solvation -67.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds