Wall clock time and date at job start Tue Mar 31 2020 23:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 C 1.52996 * 109.47178 * 120.00289 * 2 1 3 5 5 H 1.09000 * 109.47521 * 299.99961 * 4 2 1 6 6 C 1.53003 * 109.47332 * 60.00127 * 4 2 1 7 7 N 1.46501 * 109.47349 * 175.00381 * 6 4 2 8 8 C 1.34775 * 119.99874 * 180.02562 * 7 6 4 9 9 O 1.21278 * 120.00286 * 359.97438 * 8 7 6 10 10 C 1.50699 * 119.99538 * 179.97438 * 8 7 6 11 11 N 1.46505 * 109.46805 * 179.97438 * 10 8 7 12 12 C 1.34776 * 119.99872 * 180.02562 * 11 10 8 13 13 O 1.21286 * 120.00258 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00113 * 179.97438 * 12 11 10 15 15 C 1.52999 * 109.47359 * 300.00087 * 14 12 11 16 16 C 1.52998 * 109.47428 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.47095 * 59.99872 * 16 15 14 18 18 C 1.52996 * 109.47142 * 299.99790 * 17 16 15 19 19 C 1.52998 * 109.46955 * 60.00123 * 18 17 16 20 20 N 1.46505 * 109.47130 * 179.97438 * 4 2 1 21 21 C 1.36931 * 119.99788 * 84.99932 * 20 4 2 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 4 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 4 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48496 * 109.47141 * 59.99751 * 25 23 21 27 27 H 1.48490 * 109.47071 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46993 * 300.00028 * 25 23 21 29 29 H 1.09000 * 109.46863 * 299.99348 * 1 2 3 30 30 H 1.08994 * 109.47323 * 60.00002 * 1 2 3 31 31 H 1.08998 * 109.47238 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47096 * 239.99921 * 2 1 3 33 33 H 1.09003 * 109.47086 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.46999 * 300.00196 * 3 2 1 35 35 H 1.09000 * 109.46698 * 60.00552 * 3 2 1 36 36 H 1.09009 * 109.46837 * 294.99855 * 6 4 2 37 37 H 1.09000 * 109.47433 * 54.99587 * 6 4 2 38 38 H 0.97000 * 120.00018 * 359.97438 * 7 6 4 39 39 H 1.09000 * 109.47726 * 299.99386 * 10 8 7 40 40 H 1.08998 * 109.47231 * 60.00064 * 10 8 7 41 41 H 0.96997 * 120.00059 * 359.97438 * 11 10 8 42 42 H 1.09008 * 109.47350 * 59.99843 * 14 12 11 43 43 H 1.08998 * 109.47035 * 299.99706 * 15 14 12 44 44 H 1.08999 * 109.47424 * 59.99460 * 15 14 12 45 45 H 1.09000 * 109.47194 * 299.99515 * 16 15 14 46 46 H 1.09008 * 109.46921 * 180.02562 * 16 15 14 47 47 H 1.09004 * 109.46959 * 180.02562 * 17 16 15 48 48 H 1.08998 * 109.47267 * 60.00297 * 17 16 15 49 49 H 1.08998 * 109.47453 * 300.00393 * 18 17 16 50 50 H 1.08999 * 109.47479 * 180.02562 * 18 17 16 51 51 H 1.09003 * 109.47541 * 179.97438 * 19 18 17 52 52 H 1.09000 * 109.47194 * 60.00262 * 19 18 17 53 53 H 0.97000 * 119.99792 * 264.99726 * 20 4 2 54 54 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 7 2.1141 -2.8884 2.3806 8 6 1.8060 -4.1849 2.5819 9 8 1.0449 -4.7517 1.8268 10 6 2.4073 -4.9302 3.7455 11 7 1.9189 -6.3115 3.7455 12 6 2.3254 -7.1700 4.7016 13 8 3.0959 -6.7992 5.5618 14 6 1.8226 -8.5906 4.7020 15 6 0.2978 -8.5919 4.8281 16 6 -0.2127 -10.0342 4.8278 17 6 0.3973 -10.7914 6.0091 18 6 1.9221 -10.7902 5.8829 19 6 2.4326 -9.3479 5.8832 20 7 3.5050 -0.7218 1.2488 21 6 4.1901 0.3528 1.7498 22 1 3.6506 1.2005 2.1454 23 6 5.5783 0.3498 1.7547 24 7 6.2359 -0.6835 1.2730 25 14 6.5130 1.8124 2.4451 26 1 6.1495 2.0032 3.8722 27 1 7.9727 1.5639 2.3345 28 1 6.1595 3.0331 1.6768 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9562 0.8900 36 1 0.4436 -2.1651 1.3387 37 1 1.8183 -2.6512 0.3177 38 1 2.7232 -2.4351 2.9844 39 1 3.4936 -4.9287 3.6558 40 1 2.1190 -4.4433 4.6770 41 1 1.3024 -6.6079 3.0578 42 1 2.1105 -9.0782 3.7706 43 1 0.0098 -8.1044 5.7594 44 1 -0.1369 -8.0529 3.9863 45 1 0.0751 -10.5214 3.8962 46 1 -1.2992 -10.0351 4.9172 47 1 0.0339 -11.8191 6.0086 48 1 0.1094 -10.3043 6.9406 49 1 2.2100 -11.2773 4.9514 50 1 2.3567 -11.3300 6.7242 51 1 3.5190 -9.3469 5.7938 52 1 2.1447 -8.8607 6.8148 53 1 3.9897 -1.4834 0.8938 54 1 7.2059 -0.6854 1.2761 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496630864.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:46 Heat of formation + Delta-G solvation = -121.544431 kcal Electronic energy + Delta-G solvation = -29920.178981 eV Core-core repulsion = 25889.664822 eV Total energy + Delta-G solvation = -4030.514159 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.49058 -40.61624 -38.84713 -38.44467 -35.67457 -35.27771 -34.91288 -32.38507 -32.13058 -31.61714 -30.21036 -28.34132 -27.39346 -25.54776 -24.41888 -23.47183 -23.21093 -21.64275 -21.49065 -20.77710 -20.56686 -19.30254 -18.70179 -17.65334 -17.22046 -17.12851 -16.77274 -16.60563 -16.10417 -15.80955 -15.59092 -15.20319 -15.07508 -15.01163 -14.97324 -14.79036 -14.45853 -14.26001 -13.89747 -13.67052 -13.46022 -13.40786 -13.20575 -13.07381 -12.89551 -12.81413 -12.70879 -12.46568 -12.28386 -12.23135 -12.03111 -12.03026 -11.76717 -11.56753 -11.44217 -11.34655 -11.27900 -11.11847 -10.99933 -10.81231 -10.73316 -10.29463 -10.03583 -8.95375 -7.87649 -5.14153 1.46071 1.50752 1.51211 1.56587 1.57196 1.78810 2.46478 2.59990 3.45368 3.55257 3.65993 3.76058 3.79508 3.87991 3.93764 4.21552 4.24995 4.29544 4.30813 4.31690 4.32997 4.39923 4.46055 4.48102 4.56875 4.60675 4.65108 4.72261 4.77829 4.93904 4.98013 4.98965 5.07597 5.12806 5.16487 5.17616 5.21743 5.26115 5.27155 5.27347 5.32229 5.37656 5.41425 5.49531 5.57193 5.60882 5.66562 5.78186 6.32676 6.43131 6.47745 7.07955 7.14718 7.41055 8.12849 8.37145 9.34859 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014125 B = 0.002200 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.846652 B =12722.748552 C =14383.107879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C -0.135 4.135 4 C 0.170 3.830 5 H 0.058 0.942 6 C 0.123 3.877 7 N -0.705 5.705 8 C 0.512 3.488 9 O -0.573 6.573 10 C 0.102 3.898 11 N -0.710 5.710 12 C 0.515 3.485 13 O -0.581 6.581 14 C -0.098 4.098 15 C -0.109 4.109 16 C -0.115 4.115 17 C -0.122 4.122 18 C -0.115 4.115 19 C -0.098 4.098 20 N -0.727 5.727 21 C -0.213 4.213 22 H 0.079 0.921 23 C -0.072 4.072 24 N -0.967 5.967 25 Si 0.956 3.044 26 H -0.280 1.280 27 H -0.305 1.305 28 H -0.282 1.282 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.412 0.588 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.416 0.584 42 H 0.115 0.885 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.057 0.943 49 H 0.071 0.929 50 H 0.069 0.931 51 H 0.055 0.945 52 H 0.054 0.946 53 H 0.373 0.627 54 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.995 -16.329 5.509 23.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 C -0.193 4.193 4 C 0.062 3.938 5 H 0.076 0.924 6 C -0.001 4.001 7 N -0.356 5.356 8 C 0.299 3.701 9 O -0.454 6.454 10 C -0.025 4.025 11 N -0.365 5.365 12 C 0.303 3.697 13 O -0.461 6.461 14 C -0.119 4.119 15 C -0.147 4.147 16 C -0.152 4.152 17 C -0.159 4.159 18 C -0.153 4.153 19 C -0.136 4.136 20 N -0.367 5.367 21 C -0.345 4.345 22 H 0.097 0.903 23 C -0.265 4.265 24 N -0.618 5.618 25 Si 0.787 3.213 26 H -0.206 1.206 27 H -0.232 1.232 28 H -0.209 1.209 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.249 0.751 39 H 0.113 0.887 40 H 0.125 0.875 41 H 0.255 0.745 42 H 0.133 0.867 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.094 0.906 48 H 0.076 0.924 49 H 0.090 0.910 50 H 0.088 0.912 51 H 0.074 0.926 52 H 0.073 0.927 53 H 0.205 0.795 54 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -15.955 -16.250 5.661 23.466 hybrid contribution 1.492 1.042 -0.016 1.820 sum -14.463 -15.208 5.646 21.733 Atomic orbital electron populations 1.21849 0.93864 1.01978 1.02130 1.21625 0.95956 0.96699 0.98499 1.21736 1.01629 0.95655 1.00256 1.20715 0.83874 0.92422 0.96824 0.92432 1.21671 0.98191 0.91925 0.88337 1.45905 1.48135 1.10761 1.30767 1.20568 0.81069 0.82388 0.86113 1.90637 1.38069 1.68142 1.48507 1.21006 1.00355 0.83553 0.97629 1.45746 1.49368 1.09955 1.31444 1.21348 0.79845 0.88667 0.79861 1.90699 1.36985 1.79516 1.38862 1.21389 0.98105 0.89828 1.02585 1.21544 0.91467 0.99009 1.02639 1.21529 1.00674 0.93715 0.99301 1.21579 0.94911 1.00949 0.98471 1.21542 0.96182 0.94774 1.02788 1.21327 0.99724 0.95932 0.96663 1.42567 1.00557 1.20072 1.73496 1.19414 0.88712 0.96588 1.29805 0.90301 1.25345 0.97668 0.99800 1.03658 1.69785 1.06375 1.31697 1.53957 0.85459 0.77235 0.80045 0.78515 1.20598 1.23219 1.20896 0.92238 0.92209 0.92099 0.93105 0.93313 0.93150 0.93453 0.89547 0.92926 0.75111 0.88687 0.87513 0.74464 0.86742 0.92199 0.90708 0.90782 0.90637 0.90617 0.92390 0.90987 0.91185 0.92637 0.92701 0.79548 0.94495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.84 71.98 0.64 -2.67 16 2 C -0.11 -3.29 2.69 -10.80 -0.03 -3.32 16 3 C -0.14 -4.51 8.26 71.98 0.59 -3.92 16 4 C 0.17 5.74 2.18 44.99 0.10 5.84 16 5 H 0.06 1.94 8.08 -2.39 -0.02 1.92 16 6 C 0.12 3.72 4.73 86.38 0.41 4.13 16 7 N -0.71 -21.05 5.39 -463.05 -2.49 -23.54 16 8 C 0.51 14.86 7.90 87.66 0.69 15.55 16 9 O -0.57 -18.71 15.67 -3.02 -0.05 -18.75 16 10 C 0.10 2.64 6.15 85.63 0.53 3.16 16 11 N -0.71 -16.77 5.42 -466.78 -2.53 -19.30 16 12 C 0.51 12.79 7.15 87.66 0.63 13.42 16 13 O -0.58 -19.12 15.98 -3.05 -0.05 -19.17 16 14 C -0.10 -1.70 2.52 -11.54 -0.03 -1.73 16 15 C -0.11 -1.51 5.10 30.59 0.16 -1.35 16 16 C -0.11 -1.18 5.92 30.59 0.18 -1.00 16 17 C -0.12 -1.28 5.92 30.59 0.18 -1.10 16 18 C -0.12 -1.41 5.92 30.59 0.18 -1.23 16 19 C -0.10 -1.76 4.49 30.59 0.14 -1.62 16 20 N -0.73 -31.74 4.44 -322.93 -1.43 -33.18 16 21 C -0.21 -10.47 7.57 84.04 0.64 -9.84 16 22 H 0.08 3.73 7.40 -2.91 -0.02 3.71 16 23 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 24 N -0.97 -56.18 13.06 21.65 0.28 -55.89 16 25 Si 0.96 44.28 29.55 68.60 2.03 46.31 16 26 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 27 H -0.31 -14.70 7.11 99.48 0.71 -13.99 16 28 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.33 6.55 -2.39 -0.02 1.31 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.05 2.00 6.01 -2.39 -0.01 1.99 16 34 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.09 2.33 6.71 -2.38 -0.02 2.31 16 37 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.41 12.75 8.14 -92.71 -0.75 12.00 16 39 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.42 8.94 6.85 -92.71 -0.64 8.31 16 42 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 43 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.07 0.97 7.56 -2.39 -0.02 0.95 16 45 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 47 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 49 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 52 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 53 H 0.37 18.22 7.80 -92.71 -0.72 17.50 16 54 H 0.25 14.27 8.31 -92.70 -0.77 13.50 16 Total: -1.00 -64.05 421.58 0.00 -64.05 By element: Atomic # 1 Polarization: 49.78 SS G_CDS: -1.22 Total: 48.56 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 5.47 Total: 10.92 kcal Atomic # 7 Polarization: -125.74 SS G_CDS: -6.18 Total: -131.92 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -0.10 Total: -37.92 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -64.05 0.00 -64.05 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496630864.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.496 kcal (2) G-P(sol) polarization free energy of solvation -64.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds