Wall clock time and date at job start Tue Mar 31 2020 22:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34777 * 120.00100 * 2 1 4 4 O 1.21281 * 120.00232 * 5.04470 * 3 2 1 5 5 C 1.50700 * 119.99596 * 185.04299 * 3 2 1 6 6 C 1.50696 * 112.85084 * 301.77657 * 5 3 2 7 7 O 1.21289 * 119.99876 * 111.13142 * 6 5 3 8 8 N 1.34777 * 120.00235 * 291.13250 * 6 5 3 9 9 C 1.46495 * 119.99968 * 4.48699 * 8 6 5 10 10 C 1.46504 * 119.99894 * 184.76086 * 8 6 5 11 11 C 1.52996 * 109.47348 * 269.72721 * 10 8 6 12 12 C 1.52995 * 109.47603 * 180.02562 * 11 10 8 13 13 H 1.09005 * 109.46651 * 304.99909 * 12 11 10 14 14 N 1.46495 * 109.47128 * 64.99479 * 12 11 10 15 15 C 1.36940 * 120.00488 * 205.00137 * 14 12 11 16 16 H 1.08003 * 119.99167 * 0.02562 * 15 14 12 17 17 C 1.38815 * 120.00274 * 179.97438 * 15 14 12 18 18 N 1.31615 * 119.99993 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99666 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.46979 * 90.00610 * 19 17 15 21 21 H 1.48505 * 109.46604 * 210.00328 * 19 17 15 22 22 H 1.48497 * 109.47054 * 329.99965 * 19 17 15 23 23 C 1.53002 * 109.47667 * 184.99737 * 12 11 10 24 24 C 1.52993 * 109.47241 * 179.97438 * 23 12 11 25 25 C 1.52994 * 109.46978 * 300.00140 * 23 12 11 26 26 C 1.53775 * 113.61534 * 72.98020 * 5 3 2 27 27 C 1.53951 * 87.02034 * 89.22628 * 26 5 3 28 28 C 1.53779 * 87.11430 * 25.36318 * 27 26 5 29 29 H 1.09005 * 109.46698 * 299.99606 * 1 2 3 30 30 H 1.09000 * 109.47237 * 59.99103 * 1 2 3 31 31 H 1.08993 * 109.47199 * 179.97438 * 1 2 3 32 32 H 0.97002 * 120.00006 * 180.02562 * 2 1 3 33 33 H 1.09003 * 109.46967 * 275.67855 * 9 8 6 34 34 H 1.08992 * 109.47392 * 35.68230 * 9 8 6 35 35 H 1.09000 * 109.46759 * 155.68421 * 9 8 6 36 36 H 1.09001 * 109.46934 * 29.72567 * 10 8 6 37 37 H 1.08997 * 109.47121 * 149.72677 * 10 8 6 38 38 H 1.09005 * 109.46805 * 300.00288 * 11 10 8 39 39 H 1.09004 * 109.47462 * 59.99902 * 11 10 8 40 40 H 0.97006 * 120.00274 * 25.00467 * 14 12 11 41 41 H 0.97004 * 119.99889 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.46451 * 59.99653 * 23 12 11 43 43 H 1.09004 * 109.47051 * 179.97438 * 24 23 12 44 44 H 1.08997 * 109.47325 * 300.00395 * 24 23 12 45 45 H 1.09004 * 109.46749 * 60.00241 * 24 23 12 46 46 H 1.09007 * 109.47552 * 59.99305 * 25 23 12 47 47 H 1.09004 * 109.47217 * 179.97438 * 25 23 12 48 48 H 1.09004 * 109.47202 * 299.99875 * 25 23 12 49 49 H 1.09005 * 113.61508 * 203.74463 * 26 5 3 50 50 H 1.08994 * 113.61693 * 334.64596 * 26 5 3 51 51 H 1.09005 * 113.53982 * 270.80714 * 27 26 5 52 52 H 1.09007 * 113.74349 * 139.94469 * 27 26 5 53 53 H 1.08996 * 113.61557 * 220.09135 * 28 27 26 54 54 H 1.09002 * 113.68855 * 89.19603 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5361 2.2155 0.0924 5 6 3.6416 1.1696 -0.1147 6 6 4.3137 0.3880 0.9846 7 8 4.8819 -0.6525 0.7287 8 7 4.2833 0.8452 2.2520 9 6 3.5147 2.0489 2.5783 10 6 5.0238 0.1418 3.3024 11 6 4.1223 -0.9171 3.9402 12 6 4.8953 -1.6512 5.0376 13 1 5.8173 -2.0583 4.6222 14 7 5.2178 -0.7153 6.1174 15 6 6.2925 -0.9535 6.9320 16 1 6.9026 -1.8312 6.7779 17 6 6.5984 -0.0663 7.9549 18 7 5.8551 1.0036 8.1422 19 14 8.0649 -0.3910 9.0654 20 1 9.2747 0.2465 8.4868 21 1 7.8016 0.1777 10.4118 22 1 8.2839 -1.8552 9.1807 23 6 4.0377 -2.7915 5.5901 24 6 4.8111 -3.5260 6.6870 25 6 2.7438 -2.2201 6.1730 26 6 4.1525 0.8178 -1.5218 27 6 4.0747 2.3223 -1.8388 28 6 4.2406 2.5695 -0.3301 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.9501 -0.8401 -0.0004 33 1 4.1192 2.9326 2.3736 34 1 2.6104 2.0785 1.9705 35 1 3.2427 2.0313 3.6337 36 1 5.8998 -0.3403 2.8686 37 1 5.3409 0.8550 4.0632 38 1 3.2462 -0.4349 4.3739 39 1 3.8051 -1.6304 3.1795 40 1 4.6700 0.0733 6.2556 41 1 6.0686 1.6234 8.8572 42 1 3.7979 -3.4878 4.7866 43 1 4.1999 -4.3380 7.0809 44 1 5.7328 -3.9330 6.2714 45 1 5.0513 -2.8297 7.4906 46 1 2.1929 -1.6969 5.3912 47 1 2.1325 -3.0324 6.5663 48 1 2.9836 -1.5236 6.9765 49 1 5.1680 0.4215 -1.5312 50 1 3.4554 0.2120 -2.1007 51 1 3.1061 2.6355 -2.2287 52 1 4.9098 2.6888 -2.4358 53 1 3.6145 3.3758 0.0517 54 1 5.2797 2.6534 -0.0118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506486173.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:54 Heat of formation + Delta-G solvation = -64.225342 kcal Electronic energy + Delta-G solvation = -31902.013592 eV Core-core repulsion = 27873.984976 eV Total energy + Delta-G solvation = -4028.028616 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.48888 -40.24764 -39.05139 -38.14546 -36.74169 -35.69534 -34.74007 -32.94666 -31.38794 -29.52106 -28.26410 -27.70895 -27.45070 -26.54287 -26.12345 -24.94310 -22.95864 -22.62483 -21.03620 -20.34385 -20.16863 -19.16884 -18.77061 -17.53902 -17.36682 -17.02335 -16.61362 -16.40838 -16.23215 -15.97253 -15.68065 -15.52740 -15.17742 -14.91346 -14.71298 -14.40898 -14.20609 -14.02511 -13.95457 -13.79283 -13.50007 -13.24259 -13.16853 -13.02686 -12.92597 -12.88857 -12.77156 -12.70808 -12.46286 -12.39164 -12.12155 -12.05719 -12.00497 -11.80911 -11.71750 -11.46497 -11.26892 -11.16279 -11.07937 -10.81739 -10.66554 -10.24123 -9.72843 -8.86020 -7.84546 -5.08104 1.22471 1.43419 1.48720 1.50247 1.56709 1.91053 2.09283 2.61904 3.27699 3.32915 3.48961 3.50463 3.60132 3.76019 3.92752 3.97309 4.15402 4.19788 4.28363 4.33823 4.40678 4.43171 4.45651 4.56613 4.59834 4.63748 4.66021 4.73312 4.75895 4.81079 4.88319 4.90961 4.94232 4.95881 4.97909 5.02078 5.03536 5.08852 5.18312 5.28069 5.30271 5.33822 5.38627 5.44219 5.47602 5.60686 5.65331 5.83025 6.26929 6.31186 6.37685 6.96908 7.01275 7.45501 8.20479 8.45755 9.38699 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014609 B = 0.003036 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.199916 B = 9220.168180 C = 9994.167746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.724 5.724 3 C 0.548 3.452 4 O -0.551 6.551 5 C -0.138 4.138 6 C 0.529 3.471 7 O -0.559 6.559 8 N -0.602 5.602 9 C 0.070 3.930 10 C 0.128 3.872 11 C -0.115 4.115 12 C 0.181 3.819 13 H 0.036 0.964 14 N -0.720 5.720 15 C -0.209 4.209 16 H 0.071 0.929 17 C -0.072 4.072 18 N -0.966 5.966 19 Si 0.952 3.048 20 H -0.294 1.294 21 H -0.302 1.302 22 H -0.274 1.274 23 C -0.106 4.106 24 C -0.137 4.137 25 C -0.128 4.128 26 C -0.098 4.098 27 C -0.129 4.129 28 C -0.111 4.111 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.411 0.589 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.373 0.627 41 H 0.246 0.754 42 H 0.069 0.931 43 H 0.049 0.951 44 H 0.039 0.961 45 H 0.051 0.949 46 H 0.054 0.946 47 H 0.052 0.948 48 H 0.035 0.965 49 H 0.097 0.903 50 H 0.086 0.914 51 H 0.085 0.915 52 H 0.095 0.905 53 H 0.087 0.913 54 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.084 -1.287 -20.855 23.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.374 5.374 3 C 0.333 3.667 4 O -0.429 6.429 5 C -0.144 4.144 6 C 0.316 3.684 7 O -0.438 6.438 8 N -0.333 5.333 9 C -0.073 4.073 10 C 0.006 3.994 11 C -0.154 4.154 12 C 0.072 3.928 13 H 0.054 0.946 14 N -0.360 5.360 15 C -0.342 4.342 16 H 0.089 0.911 17 C -0.264 4.264 18 N -0.618 5.618 19 Si 0.784 3.216 20 H -0.221 1.221 21 H -0.229 1.229 22 H -0.199 1.199 23 C -0.127 4.127 24 C -0.195 4.195 25 C -0.186 4.186 26 C -0.136 4.136 27 C -0.166 4.166 28 C -0.149 4.149 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.125 0.875 32 H 0.246 0.754 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.206 0.794 41 H 0.055 0.945 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.071 0.929 48 H 0.054 0.946 49 H 0.115 0.885 50 H 0.105 0.895 51 H 0.103 0.897 52 H 0.114 0.886 53 H 0.105 0.895 54 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.101 -1.182 -20.849 23.197 hybrid contribution 0.958 -0.086 1.410 1.707 sum -9.143 -1.269 -19.439 21.519 Atomic orbital electron populations 1.21755 0.77662 1.04423 1.02089 1.45838 1.09001 1.08432 1.74140 1.19493 0.87771 0.84079 0.75362 1.90702 1.69865 1.32144 1.50200 1.22424 0.93115 1.01563 0.97311 1.20292 0.80293 0.84793 0.83018 1.90695 1.46086 1.24201 1.82827 1.47973 1.49306 1.28358 1.07661 1.22095 0.96056 0.86414 1.02696 1.21358 0.94191 0.95126 0.88748 1.21961 0.98517 0.97714 0.97227 1.20356 0.95081 0.89945 0.87438 0.94607 1.42474 1.32722 1.26278 1.34517 1.19446 1.03365 1.04519 1.06844 0.91075 1.25246 1.01630 0.97940 1.01570 1.69772 1.42156 1.14842 1.35059 0.85438 0.80291 0.77491 0.78419 1.22133 1.22889 1.19902 1.21617 0.96028 0.97392 0.97653 1.21770 0.98879 0.99260 0.99564 1.21638 0.96390 1.00189 1.00344 1.22857 1.02781 0.98205 0.89736 1.22853 1.03585 0.94749 0.95437 1.22908 1.01297 0.92687 0.98011 0.92861 0.91806 0.87533 0.75406 0.91074 0.90557 0.90562 0.91725 0.90820 0.91817 0.91346 0.79424 0.94534 0.91250 0.93178 0.94196 0.92992 0.92676 0.92891 0.94599 0.88462 0.89527 0.89663 0.88597 0.89465 0.88794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 10.71 127.77 1.37 2.47 16 2 N -0.72 -12.52 5.67 -484.51 -2.75 -15.27 16 3 C 0.55 11.88 4.89 87.66 0.43 12.31 16 4 O -0.55 -14.48 14.72 -3.03 -0.04 -14.53 16 5 C -0.14 -2.90 0.57 -53.15 -0.03 -2.93 16 6 C 0.53 14.22 6.46 87.66 0.57 14.79 16 7 O -0.56 -18.00 15.85 -3.06 -0.05 -18.05 16 8 N -0.60 -16.69 2.87 -846.77 -2.43 -19.13 16 9 C 0.07 1.72 9.29 127.77 1.19 2.91 16 10 C 0.13 4.20 5.24 86.38 0.45 4.66 16 11 C -0.12 -3.69 4.57 30.59 0.14 -3.55 16 12 C 0.18 6.77 2.19 44.99 0.10 6.87 16 13 H 0.04 1.44 8.08 -2.38 -0.02 1.42 16 14 N -0.72 -33.08 3.69 -322.94 -1.19 -34.28 16 15 C -0.21 -10.87 7.57 84.03 0.64 -10.24 16 16 H 0.07 3.65 7.40 -2.91 -0.02 3.62 16 17 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 18 N -0.97 -56.86 13.06 21.65 0.28 -56.58 16 19 Si 0.95 45.60 29.55 68.60 2.03 47.63 16 20 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 21 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 22 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 23 C -0.11 -3.57 2.80 -10.80 -0.03 -3.60 16 24 C -0.14 -4.98 8.26 71.98 0.59 -4.38 16 25 C -0.13 -4.18 8.68 71.98 0.63 -3.55 16 26 C -0.10 -1.68 6.89 31.18 0.21 -1.46 16 27 C -0.13 -1.93 7.81 31.18 0.24 -1.69 16 28 C -0.11 -2.08 5.66 31.12 0.18 -1.91 16 29 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.41 6.44 8.71 -92.71 -0.81 5.64 16 33 H 0.07 1.58 7.76 -2.39 -0.02 1.57 16 34 H 0.08 1.87 4.50 -2.39 -0.01 1.86 16 35 H 0.08 1.94 8.03 -2.39 -0.02 1.92 16 36 H 0.06 2.31 7.48 -2.39 -0.02 2.29 16 37 H 0.07 2.72 7.68 -2.39 -0.02 2.70 16 38 H 0.06 2.03 6.71 -2.38 -0.02 2.02 16 39 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.37 18.59 7.80 -92.70 -0.72 17.87 16 41 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 42 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.05 2.26 6.01 -2.39 -0.01 2.24 16 46 H 0.05 1.62 6.54 -2.38 -0.02 1.60 16 47 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 48 H 0.03 1.40 7.60 -2.39 -0.02 1.38 16 49 H 0.10 1.81 7.78 -2.38 -0.02 1.79 16 50 H 0.09 1.28 8.09 -2.39 -0.02 1.26 16 51 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 52 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 53 H 0.09 1.74 7.32 -2.39 -0.02 1.72 16 54 H 0.09 1.74 8.09 -2.39 -0.02 1.72 16 Total: -1.00 -65.12 419.15 2.35 -62.78 By element: Atomic # 1 Polarization: 40.87 SS G_CDS: -0.64 Total: 40.24 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 7.14 Total: 7.19 kcal Atomic # 7 Polarization: -119.16 SS G_CDS: -6.09 Total: -125.25 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -0.09 Total: -32.58 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -65.12 2.35 -62.78 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506486173.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.450 kcal (2) G-P(sol) polarization free energy of solvation -65.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds