Wall clock time and date at job start Tue Mar 31 2020 22:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47203 * 2 1 4 4 C 1.53003 * 109.46936 * 119.99565 * 2 1 3 5 5 H 1.09002 * 109.46991 * 173.63266 * 4 2 1 6 6 C 1.50695 * 109.47026 * 53.63098 * 4 2 1 7 7 O 1.21282 * 119.99827 * 239.99525 * 6 4 2 8 8 N 1.34777 * 120.00045 * 60.00370 * 6 4 2 9 9 C 1.46494 * 119.99959 * 179.97438 * 8 6 4 10 10 C 1.52999 * 109.47073 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.47005 * 294.99415 * 10 9 8 12 12 N 1.46493 * 109.47433 * 54.99914 * 10 9 8 13 13 C 1.36937 * 120.00453 * 205.00150 * 12 10 9 14 14 H 1.08007 * 119.99523 * 359.97438 * 13 12 10 15 15 C 1.38807 * 120.00321 * 179.97438 * 13 12 10 16 16 N 1.31622 * 120.00245 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 120.00161 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47150 * 89.99612 * 17 15 13 19 19 H 1.48503 * 109.47455 * 210.00085 * 17 15 13 20 20 H 1.48508 * 109.47146 * 330.00064 * 17 15 13 21 21 C 1.53009 * 109.47210 * 174.99846 * 10 9 8 22 22 C 1.53003 * 109.46937 * 179.97438 * 21 10 9 23 23 C 1.52997 * 109.47270 * 299.99820 * 21 10 9 24 24 N 1.46500 * 109.47196 * 293.62899 * 4 2 1 25 25 C 1.46771 * 124.34714 * 60.35319 * 24 4 2 26 26 C 1.54480 * 105.47282 * 162.96190 * 25 24 4 27 27 C 1.54625 * 101.76521 * 25.41833 * 26 25 24 28 28 C 1.34419 * 124.35352 * 240.32994 * 24 4 2 29 29 O 1.21272 * 124.94059 * 0.39455 * 28 24 4 30 30 H 1.08998 * 109.47141 * 311.86212 * 1 2 3 31 31 H 1.09006 * 109.46812 * 71.85952 * 1 2 3 32 32 H 1.08996 * 109.47307 * 191.85288 * 1 2 3 33 33 H 1.08995 * 109.47659 * 239.99561 * 2 1 3 34 34 H 1.09009 * 109.46760 * 299.99340 * 3 2 1 35 35 H 1.08995 * 109.47171 * 59.99263 * 3 2 1 36 36 H 1.09004 * 109.47110 * 179.97438 * 3 2 1 37 37 H 0.96997 * 120.00073 * 359.97438 * 8 6 4 38 38 H 1.09001 * 109.47078 * 299.99308 * 9 8 6 39 39 H 1.09002 * 109.47358 * 59.99640 * 9 8 6 40 40 H 0.97003 * 120.00270 * 25.00024 * 12 10 9 41 41 H 0.96994 * 120.00140 * 179.97438 * 16 15 13 42 42 H 1.09000 * 109.46583 * 60.00123 * 21 10 9 43 43 H 1.08997 * 109.47146 * 300.00093 * 22 21 10 44 44 H 1.08993 * 109.47089 * 60.00066 * 22 21 10 45 45 H 1.09001 * 109.46546 * 179.97438 * 22 21 10 46 46 H 1.09011 * 109.46901 * 59.99727 * 23 21 10 47 47 H 1.08996 * 109.47176 * 179.97438 * 23 21 10 48 48 H 1.09000 * 109.47126 * 300.00547 * 23 21 10 49 49 H 1.09003 * 110.24220 * 43.95987 * 25 24 4 50 50 H 1.08999 * 110.24319 * 281.96439 * 25 24 4 51 51 H 1.09004 * 110.96722 * 143.53779 * 26 25 24 52 52 H 1.08997 * 110.96739 * 267.29624 * 26 25 24 53 53 H 1.08997 * 110.48807 * 93.87610 * 27 26 25 54 54 H 1.09004 * 110.48765 * 216.52397 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1240 -0.8209 1.1942 6 6 1.4131 -2.0891 1.3307 7 8 0.7332 -2.3885 2.2894 8 7 1.6080 -2.9799 0.3383 9 6 0.9990 -4.3099 0.4177 10 6 1.3737 -5.1174 -0.8267 11 1 0.9339 -4.6512 -1.7083 12 7 2.8315 -5.1500 -0.9672 13 6 3.3965 -5.3407 -2.1999 14 1 2.7673 -5.4675 -3.0685 15 6 4.7779 -5.3709 -2.3330 16 7 5.3210 -5.5547 -3.5178 17 14 5.8661 -5.1523 -0.8306 18 1 6.1442 -6.4787 -0.2236 19 1 7.1451 -4.5146 -1.2343 20 1 5.1741 -4.2896 0.1605 21 6 0.8428 -6.5457 -0.6867 22 6 1.2169 -7.3530 -1.9314 23 6 1.4600 -7.2002 0.5508 24 7 1.6808 0.0523 2.4405 25 6 0.3042 0.3747 2.8345 26 6 0.3878 0.7937 4.3191 27 6 1.8492 1.2877 4.4254 28 6 2.5695 0.5575 3.3133 29 8 3.7735 0.4440 3.2228 30 1 -0.3633 0.6858 0.7653 31 1 -0.3633 0.3200 -0.9767 32 1 -0.3634 -1.0057 0.2111 33 1 1.8934 -0.5139 -0.8899 34 1 1.6767 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 3.1301 1.4425 0.0005 37 1 2.1515 -2.7404 -0.4286 38 1 1.3628 -4.8235 1.3076 39 1 -0.0850 -4.2105 0.4731 40 1 3.3966 -5.0364 -0.1870 41 1 6.2862 -5.5755 -3.6109 42 1 -0.2419 -6.5214 -0.5822 43 1 0.7769 -6.8866 -2.8128 44 1 2.3015 -7.3772 -2.0363 45 1 0.8391 -8.3706 -1.8314 46 1 1.1931 -6.6248 1.4374 47 1 1.0815 -8.2174 0.6508 48 1 2.5447 -7.2243 0.4464 49 1 -0.3345 -0.5018 2.7253 50 1 -0.0778 1.1982 2.2311 51 1 -0.3132 1.5995 4.5370 52 1 0.2156 -0.0593 4.9754 53 1 1.8999 2.3653 4.2697 54 1 2.2726 1.0208 5.3938 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568471861.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:41 Heat of formation + Delta-G solvation = -83.452589 kcal Electronic energy + Delta-G solvation = -32202.783226 eV Core-core repulsion = 28173.920853 eV Total energy + Delta-G solvation = -4028.862372 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.12439 -40.50534 -39.01910 -37.75421 -36.55774 -35.29110 -34.75914 -32.57476 -32.52829 -30.21760 -28.91415 -28.15813 -27.78623 -27.67444 -25.27004 -23.68941 -22.75511 -22.22283 -21.53669 -20.57220 -20.20160 -19.56252 -18.54565 -17.89724 -17.16162 -17.01249 -16.71803 -16.55007 -16.17532 -15.92686 -15.58396 -15.36692 -15.09361 -14.74073 -14.68444 -14.64440 -14.61228 -14.34031 -13.92920 -13.80902 -13.61405 -13.46642 -13.19702 -13.04032 -13.01764 -12.90108 -12.78637 -12.50910 -12.33517 -12.22165 -12.13338 -12.07954 -12.01589 -11.83275 -11.81214 -11.69093 -11.39769 -11.27966 -11.13230 -10.93015 -10.80731 -10.06900 -9.64942 -9.26911 -7.96687 -5.26677 1.34968 1.37793 1.40957 1.43015 1.50746 1.80850 2.32695 2.48717 3.34780 3.37925 3.53093 3.59178 3.64746 3.71094 3.85220 3.86264 4.03378 4.08913 4.23457 4.26210 4.27942 4.35388 4.39718 4.55025 4.56697 4.63620 4.70145 4.75968 4.76859 4.87911 4.88646 4.91896 4.93731 4.94291 5.07588 5.10414 5.11276 5.19838 5.21151 5.24290 5.29107 5.30081 5.34532 5.46339 5.49362 5.56196 5.80428 5.88495 6.10394 6.26673 6.46597 7.06048 7.12266 7.13668 7.88353 8.05640 9.24632 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012324 B = 0.003634 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.457339 B = 7703.408668 C = 8461.256505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.097 4.097 3 C -0.135 4.135 4 C 0.136 3.864 5 H 0.094 0.906 6 C 0.509 3.491 7 O -0.563 6.563 8 N -0.712 5.712 9 C 0.119 3.881 10 C 0.174 3.826 11 H 0.062 0.938 12 N -0.742 5.742 13 C -0.195 4.195 14 H 0.073 0.927 15 C -0.053 4.053 16 N -0.980 5.980 17 Si 0.929 3.071 18 H -0.290 1.290 19 H -0.305 1.305 20 H -0.262 1.262 21 C -0.102 4.102 22 C -0.136 4.136 23 C -0.140 4.140 24 N -0.589 5.589 25 C 0.091 3.909 26 C -0.120 4.120 27 C -0.143 4.143 28 C 0.501 3.499 29 O -0.590 6.590 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.040 0.960 37 H 0.409 0.591 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.360 0.640 41 H 0.253 0.747 42 H 0.085 0.915 43 H 0.040 0.960 44 H 0.048 0.952 45 H 0.050 0.950 46 H 0.058 0.942 47 H 0.058 0.942 48 H 0.034 0.966 49 H 0.080 0.920 50 H 0.099 0.901 51 H 0.126 0.874 52 H 0.075 0.925 53 H 0.129 0.871 54 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.040 14.848 13.028 26.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.117 4.117 3 C -0.193 4.193 4 C 0.028 3.972 5 H 0.112 0.888 6 C 0.294 3.706 7 O -0.442 6.442 8 N -0.364 5.364 9 C -0.005 4.005 10 C 0.066 3.934 11 H 0.080 0.920 12 N -0.385 5.385 13 C -0.327 4.327 14 H 0.091 0.909 15 C -0.244 4.244 16 N -0.632 5.632 17 Si 0.760 3.240 18 H -0.217 1.217 19 H -0.233 1.233 20 H -0.187 1.187 21 C -0.123 4.123 22 C -0.193 4.193 23 C -0.197 4.197 24 N -0.321 5.321 25 C -0.030 4.030 26 C -0.157 4.157 27 C -0.183 4.183 28 C 0.291 3.709 29 O -0.471 6.471 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.245 0.755 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.193 0.807 41 H 0.062 0.938 42 H 0.103 0.897 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.053 0.947 49 H 0.098 0.902 50 H 0.117 0.883 51 H 0.144 0.856 52 H 0.094 0.906 53 H 0.147 0.853 54 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.908 14.499 13.377 25.982 hybrid contribution 2.028 -0.527 0.019 2.096 sum -14.880 13.972 13.396 24.415 Atomic orbital electron populations 1.22170 0.92945 1.02067 1.03883 1.21450 0.98041 0.97624 0.94541 1.21722 1.00307 0.94298 1.02949 1.20951 1.00341 0.88336 0.87561 0.88778 1.20981 0.80651 0.86801 0.82145 1.90624 1.40962 1.79685 1.32971 1.46046 1.52614 1.14264 1.23453 1.21709 0.98427 0.81829 0.98522 1.20686 0.83398 0.93865 0.95499 0.91962 1.42799 1.02215 1.87854 1.05658 1.18950 0.89932 1.37326 0.86442 0.90885 1.25127 0.97837 1.03968 0.97485 1.69817 1.10213 1.59914 1.23277 0.85812 0.79212 0.77669 0.81305 1.21670 1.23280 1.18709 1.21549 0.99808 0.95727 0.95233 1.21741 1.02038 0.98642 0.96922 1.21771 1.00289 1.00394 0.97236 1.47977 1.09187 1.51405 1.23521 1.22647 0.81753 1.01884 0.96683 1.22650 0.95478 1.03027 0.94562 1.22354 0.96419 1.02423 0.97101 1.21918 0.86095 0.78569 0.84344 1.90701 1.16093 1.62685 1.77605 0.90050 0.90735 0.93810 0.89338 0.90340 0.92002 0.94083 0.75485 0.92160 0.89572 0.80702 0.93798 0.89665 0.94067 0.93335 0.93055 0.92357 0.92275 0.94664 0.90163 0.88289 0.85560 0.90619 0.85325 0.87710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 8.22 71.98 0.59 -1.91 16 2 C -0.10 -1.93 2.72 -10.79 -0.03 -1.95 16 3 C -0.14 -2.42 8.93 71.98 0.64 -1.77 16 4 C 0.14 3.52 2.67 44.24 0.12 3.64 16 5 H 0.09 2.93 7.53 -2.39 -0.02 2.92 16 6 C 0.51 14.78 5.35 87.66 0.47 15.25 16 7 O -0.56 -18.44 14.52 -3.04 -0.04 -18.48 16 8 N -0.71 -20.53 5.29 -463.07 -2.45 -22.99 16 9 C 0.12 3.39 5.02 86.38 0.43 3.82 16 10 C 0.17 5.57 2.35 45.00 0.11 5.67 16 11 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 12 N -0.74 -30.27 3.48 -322.94 -1.12 -31.39 16 13 C -0.20 -9.87 8.05 84.03 0.68 -9.19 16 14 H 0.07 4.01 7.62 -2.91 -0.02 3.99 16 15 C -0.05 -2.94 5.50 84.86 0.47 -2.47 16 16 N -0.98 -60.35 13.97 21.65 0.30 -60.05 16 17 Si 0.93 45.41 27.74 68.60 1.90 47.31 16 18 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 19 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16 20 H -0.26 -11.89 6.52 99.48 0.65 -11.24 16 21 C -0.10 -3.00 2.80 -10.79 -0.03 -3.04 16 22 C -0.14 -4.63 8.26 71.98 0.59 -4.04 16 23 C -0.14 -4.08 8.69 71.98 0.63 -3.45 16 24 N -0.59 -13.63 1.50 -798.19 -1.20 -14.83 16 25 C 0.09 1.43 4.81 86.83 0.42 1.85 16 26 C -0.12 -1.31 7.18 31.65 0.23 -1.08 16 27 C -0.14 -2.11 6.86 30.59 0.21 -1.90 16 28 C 0.50 13.12 8.02 87.90 0.71 13.83 16 29 O -0.59 -21.46 17.35 -3.01 -0.05 -21.51 16 30 H 0.08 1.06 4.66 -2.39 -0.01 1.05 16 31 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.04 0.86 6.61 -2.39 -0.02 0.85 16 33 H 0.09 1.82 7.75 -2.39 -0.02 1.80 16 34 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.06 1.02 7.11 -2.39 -0.02 1.00 16 36 H 0.04 0.87 8.14 -2.39 -0.02 0.86 16 37 H 0.41 12.12 7.68 -92.71 -0.71 11.41 16 38 H 0.06 1.84 6.18 -2.39 -0.01 1.83 16 39 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.36 15.21 5.66 -92.71 -0.52 14.68 16 41 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 42 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.05 2.06 6.01 -2.39 -0.01 2.05 16 45 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.06 1.55 6.32 -2.38 -0.02 1.54 16 47 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.03 1.21 7.60 -2.39 -0.02 1.20 16 49 H 0.08 1.55 6.38 -2.39 -0.02 1.53 16 50 H 0.10 1.03 5.87 -2.39 -0.01 1.02 16 51 H 0.13 0.48 8.14 -2.38 -0.02 0.46 16 52 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 53 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 54 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -72.47 407.09 3.17 -69.30 By element: Atomic # 1 Polarization: 39.78 SS G_CDS: -0.39 Total: 39.38 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: 6.23 Total: 13.25 kcal Atomic # 7 Polarization: -124.79 SS G_CDS: -4.47 Total: -129.25 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -0.10 Total: -39.99 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.90 Total: 47.31 kcal Total: -72.47 3.17 -69.30 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568471861.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.156 kcal (2) G-P(sol) polarization free energy of solvation -72.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds