Wall clock time and date at job start Tue Mar 31 2020 22:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46928 * 2 1 4 4 C 1.53002 * 109.46904 * 119.99838 * 2 1 3 5 5 C 1.50696 * 109.46561 * 175.00152 * 4 2 1 6 6 O 1.21279 * 120.00623 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99743 * 180.02562 * 5 4 2 8 8 C 1.46503 * 120.00314 * 184.95563 * 7 5 4 9 9 H 1.08999 * 109.47087 * 29.27304 * 8 7 5 10 10 C 1.53001 * 109.46656 * 269.28254 * 8 7 5 11 11 N 1.46898 * 109.47682 * 54.99527 * 10 8 7 12 12 C 1.46894 * 111.00072 * 180.02562 * 11 10 8 13 13 C 1.50701 * 109.47235 * 180.02562 * 12 11 10 14 14 O 1.21290 * 119.99657 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00072 * 180.02562 * 13 12 11 16 16 C 1.37104 * 119.99868 * 180.02562 * 15 13 12 17 17 H 1.07996 * 119.99906 * 359.97438 * 16 15 13 18 18 C 1.38947 * 120.00045 * 180.02562 * 16 15 13 19 19 N 1.31416 * 119.99706 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00026 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47377 * 59.99821 * 20 18 16 22 22 H 1.48507 * 109.47136 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47146 * 299.99475 * 20 18 16 24 24 C 1.52999 * 109.47601 * 149.27821 * 8 7 5 25 25 C 1.54268 * 110.03171 * 57.84826 * 24 8 7 26 26 C 1.54958 * 104.15874 * 217.13853 * 25 24 8 27 27 C 1.54890 * 102.78120 * 37.88583 * 26 25 24 28 28 C 1.53870 * 110.03146 * 300.63051 * 24 8 7 29 29 H 1.08996 * 109.47451 * 299.99399 * 1 2 3 30 30 H 1.08995 * 109.47252 * 60.00013 * 1 2 3 31 31 H 1.09005 * 109.46857 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47036 * 239.99754 * 2 1 3 33 33 H 1.08995 * 109.47239 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.47208 * 299.99895 * 3 2 1 35 35 H 1.09000 * 109.47129 * 59.99590 * 3 2 1 36 36 H 1.09003 * 109.47012 * 55.00650 * 4 2 1 37 37 H 1.08994 * 109.47454 * 295.00221 * 4 2 1 38 38 H 0.97006 * 120.00197 * 4.94867 * 7 5 4 39 39 H 1.09007 * 109.47081 * 294.99039 * 10 8 7 40 40 H 1.09002 * 109.47251 * 174.99916 * 10 8 7 41 41 H 1.00906 * 110.99528 * 56.04760 * 11 10 8 42 42 H 1.09005 * 109.47294 * 299.99951 * 12 11 10 43 43 H 1.09004 * 109.47231 * 60.00102 * 12 11 10 44 44 H 0.97002 * 120.00486 * 359.97438 * 15 13 12 45 45 H 0.97003 * 119.99672 * 180.02562 * 19 18 16 46 46 H 1.08999 * 110.01727 * 179.24119 * 24 8 7 47 47 H 1.08998 * 110.48527 * 335.78379 * 25 24 8 48 48 H 1.08993 * 110.48360 * 98.42629 * 25 24 8 49 49 H 1.08998 * 110.72047 * 279.57391 * 26 25 24 50 50 H 1.09000 * 110.92184 * 156.29714 * 26 25 24 51 51 H 1.08998 * 110.48712 * 203.40429 * 27 26 25 52 52 H 1.09009 * 110.59460 * 80.81812 * 27 26 25 53 53 H 1.09000 * 110.03501 * 238.56885 * 28 24 8 54 54 H 1.09003 * 110.03210 * 359.95551 * 28 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.8293 1.1889 6 8 4.1450 -0.3747 0.2399 7 7 4.2148 -1.4321 2.1890 8 6 5.6798 -1.4419 2.1845 9 1 6.0476 -0.5534 1.6713 10 6 6.1791 -2.6931 1.4592 11 7 5.5888 -2.7484 0.1152 12 6 6.0464 -3.9398 -0.6122 13 6 5.4219 -3.9619 -1.9835 14 8 4.6700 -3.0723 -2.3218 15 7 5.6988 -4.9701 -2.8340 16 6 5.1311 -4.9898 -4.0818 17 1 4.4616 -4.1977 -4.3830 18 6 5.4162 -6.0294 -4.9584 19 7 6.2304 -6.9935 -4.5916 20 14 4.6421 -6.0567 -6.6582 21 1 5.0439 -4.8375 -7.4048 22 1 5.1041 -7.2615 -7.3933 23 1 3.1632 -6.0926 -6.5281 24 6 6.1943 -1.4482 3.6254 25 6 5.6374 -2.6731 4.3800 26 6 5.3669 -2.1454 5.8117 27 6 4.8374 -0.7128 5.5545 28 6 5.6863 -0.2023 4.3719 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 1.6054 -1.7198 1.2951 37 1 1.7516 -0.1584 2.1370 38 1 3.7292 -1.8594 2.9119 39 1 5.8866 -3.5801 2.0213 40 1 7.2655 -2.6567 1.3776 41 1 5.7920 -1.9073 -0.4039 42 1 7.1318 -3.9124 -0.7081 43 1 5.7525 -4.8352 -0.0643 44 1 6.3004 -5.6813 -2.5636 45 1 6.4297 -7.7192 -5.2037 46 1 7.2841 -1.4691 3.6324 47 1 4.7114 -3.0165 3.9190 48 1 6.3746 -3.4755 4.4013 49 1 6.2885 -2.1180 6.3931 50 1 4.6130 -2.7516 6.3139 51 1 4.9908 -0.0859 6.4329 52 1 3.7817 -0.7370 5.2839 53 1 6.5295 0.3810 4.7419 54 1 5.0738 0.4072 3.7074 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569598958.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:57 Heat of formation + Delta-G solvation = -124.445061 kcal Electronic energy + Delta-G solvation = -31073.376753 eV Core-core repulsion = 27042.736813 eV Total energy + Delta-G solvation = -4030.639939 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.16947 -40.08583 -39.31368 -36.96643 -36.26163 -35.83800 -34.70653 -33.26377 -31.76179 -29.60645 -28.97708 -28.76289 -27.91965 -26.90530 -25.12086 -23.10974 -22.21454 -21.18284 -21.12060 -20.56731 -20.17567 -19.86847 -18.01226 -17.93237 -17.26969 -16.79723 -16.47718 -16.37858 -16.26690 -15.92017 -15.67713 -15.43541 -14.98796 -14.90159 -14.69546 -14.47540 -14.19952 -14.09620 -13.94544 -13.70420 -13.45245 -13.18653 -13.05052 -12.98175 -12.81436 -12.65562 -12.63840 -12.45281 -12.14040 -11.99441 -11.89402 -11.81396 -11.76548 -11.69664 -11.52437 -11.51602 -11.48173 -11.42649 -11.30167 -10.45095 -10.32205 -10.01989 -9.72678 -9.20550 -8.47720 -5.96374 1.37757 1.38635 1.50185 2.04152 2.05921 2.27904 2.47661 2.94722 3.19013 3.50343 3.70078 3.79350 3.90730 3.92274 4.03545 4.10115 4.20333 4.26965 4.35904 4.44145 4.50054 4.51453 4.56029 4.64092 4.67866 4.71680 4.73153 4.77418 4.78427 4.79243 4.86039 4.87055 4.92210 5.04194 5.06910 5.11512 5.17536 5.17694 5.33775 5.35069 5.38755 5.41968 5.48848 5.51700 5.57072 5.57844 5.83171 5.91992 6.16667 6.44843 6.60448 6.87222 7.12176 7.55641 7.67500 8.12924 8.69799 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010543 B = 0.002978 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.084413 B = 9399.810587 C =11494.673194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 C -0.143 4.143 4 C -0.128 4.128 5 C 0.513 3.487 6 O -0.564 6.564 7 N -0.704 5.704 8 C 0.162 3.838 9 H 0.062 0.938 10 C 0.045 3.955 11 N -0.670 5.670 12 C 0.065 3.935 13 C 0.436 3.564 14 O -0.617 6.617 15 N -0.575 5.575 16 C -0.334 4.334 17 H 0.074 0.926 18 C -0.013 4.013 19 N -0.921 5.921 20 Si 0.992 3.008 21 H -0.273 1.273 22 H -0.267 1.267 23 H -0.272 1.272 24 C -0.090 4.090 25 C -0.121 4.121 26 C -0.121 4.121 27 C -0.121 4.121 28 C -0.117 4.117 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.034 0.966 33 H 0.048 0.952 34 H 0.045 0.955 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.118 0.882 38 H 0.406 0.594 39 H 0.086 0.914 40 H 0.040 0.960 41 H 0.341 0.659 42 H 0.058 0.942 43 H 0.102 0.898 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.090 0.910 47 H 0.067 0.933 48 H 0.072 0.928 49 H 0.069 0.931 50 H 0.073 0.927 51 H 0.068 0.932 52 H 0.068 0.932 53 H 0.066 0.934 54 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.349 10.229 25.190 27.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.103 4.103 3 C -0.200 4.200 4 C -0.168 4.168 5 C 0.301 3.699 6 O -0.442 6.442 7 N -0.357 5.357 8 C 0.056 3.944 9 H 0.080 0.920 10 C -0.085 4.085 11 N -0.303 5.303 12 C -0.067 4.067 13 C 0.224 3.776 14 O -0.503 6.503 15 N -0.213 5.213 16 C -0.464 4.464 17 H 0.092 0.908 18 C -0.212 4.212 19 N -0.562 5.562 20 Si 0.816 3.184 21 H -0.199 1.199 22 H -0.191 1.191 23 H -0.197 1.197 24 C -0.109 4.109 25 C -0.159 4.159 26 C -0.158 4.158 27 C -0.158 4.158 28 C -0.155 4.155 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.136 0.864 38 H 0.243 0.757 39 H 0.104 0.896 40 H 0.058 0.942 41 H 0.161 0.839 42 H 0.076 0.924 43 H 0.120 0.880 44 H 0.229 0.771 45 H 0.087 0.913 46 H 0.108 0.892 47 H 0.086 0.914 48 H 0.091 0.909 49 H 0.088 0.912 50 H 0.092 0.908 51 H 0.087 0.913 52 H 0.086 0.914 53 H 0.084 0.916 54 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.925 10.699 24.408 26.938 hybrid contribution 0.952 -0.548 -1.220 1.642 sum -2.973 10.151 23.188 25.487 Atomic orbital electron populations 1.21798 0.93335 1.02033 1.02559 1.20799 0.96337 0.96446 0.96722 1.21848 1.01438 0.95297 1.01465 1.21712 0.91036 1.03338 1.00691 1.20918 0.90783 0.76766 0.81466 1.90652 1.71032 1.49296 1.33200 1.45701 1.06229 1.57797 1.25967 1.20849 0.80967 0.96599 0.95968 0.91965 1.22577 0.96558 0.99932 0.89385 1.60055 1.62568 1.04079 1.03608 1.21530 0.97393 0.96451 0.91349 1.20939 0.85338 0.83259 0.88097 1.90535 1.41204 1.39730 1.78800 1.41915 1.43084 1.22906 1.13348 1.19596 1.26411 1.08948 0.91395 0.90758 1.26025 0.97207 0.94551 1.03433 1.69669 1.35861 1.12027 1.38644 0.85009 0.78472 0.78007 0.76956 1.19880 1.19111 1.19706 1.22004 1.01027 0.96406 0.91475 1.22477 1.01133 0.96729 0.95543 1.22492 1.01316 0.95896 0.96110 1.22348 0.99471 0.96488 0.97540 1.22135 0.99708 0.96586 0.97041 0.90523 0.92910 0.92663 0.94764 0.93309 0.93574 0.91337 0.88643 0.86362 0.75701 0.89615 0.94174 0.83909 0.92422 0.87979 0.77067 0.91261 0.89184 0.91443 0.90929 0.91238 0.90837 0.91288 0.91353 0.91555 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.19 71.98 0.66 -2.17 16 2 C -0.08 -2.23 2.57 -10.79 -0.03 -2.25 16 3 C -0.14 -3.67 8.93 71.98 0.64 -3.03 16 4 C -0.13 -2.81 5.18 29.85 0.15 -2.65 16 5 C 0.51 14.32 6.98 87.66 0.61 14.94 16 6 O -0.56 -21.39 11.73 -3.03 -0.04 -21.43 16 7 N -0.70 -14.63 4.11 -442.53 -1.82 -16.45 16 8 C 0.16 3.39 1.92 44.99 0.09 3.48 16 9 H 0.06 1.64 7.47 -2.39 -0.02 1.62 16 10 C 0.05 1.11 5.26 86.30 0.45 1.56 16 11 N -0.67 -23.74 4.81 -517.92 -2.49 -26.23 16 12 C 0.07 2.47 6.17 85.56 0.53 2.99 16 13 C 0.44 22.51 7.82 87.66 0.69 23.20 16 14 O -0.62 -37.39 15.78 -3.06 -0.05 -37.44 16 15 N -0.57 -31.29 5.29 -306.99 -1.62 -32.91 16 16 C -0.33 -19.97 9.68 84.04 0.81 -19.16 16 17 H 0.07 4.77 7.16 -2.91 -0.02 4.74 16 18 C -0.01 -0.70 5.50 84.92 0.47 -0.23 16 19 N -0.92 -51.32 13.05 21.66 0.28 -51.03 16 20 Si 0.99 44.69 29.55 68.60 2.03 46.71 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 24 C -0.09 -1.24 2.82 -10.07 -0.03 -1.26 16 25 C -0.12 -1.37 4.98 31.69 0.16 -1.21 16 26 C -0.12 -1.10 6.91 31.91 0.22 -0.88 16 27 C -0.12 -1.18 6.83 31.67 0.22 -0.96 16 28 C -0.12 -1.49 6.19 31.32 0.19 -1.30 16 29 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.03 1.25 7.95 -2.39 -0.02 1.23 16 33 H 0.05 1.52 5.95 -2.39 -0.01 1.51 16 34 H 0.05 1.16 8.14 -2.38 -0.02 1.15 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.41 6.24 6.83 -92.70 -0.63 5.60 16 39 H 0.09 1.84 7.08 -2.38 -0.02 1.83 16 40 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.34 14.29 7.15 -89.69 -0.64 13.64 16 42 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 43 H 0.10 3.43 8.14 -2.38 -0.02 3.41 16 44 H 0.40 20.35 7.90 -92.71 -0.73 19.62 16 45 H 0.28 14.46 8.31 -92.71 -0.77 13.69 16 46 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.07 0.81 6.07 -2.39 -0.01 0.80 16 48 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 51 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 52 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 53 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 54 H 0.05 0.87 7.35 -2.39 -0.02 0.85 16 Total: -1.00 -76.31 420.19 1.03 -75.29 By element: Atomic # 1 Polarization: 53.56 SS G_CDS: -1.11 Total: 52.45 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 5.84 Total: 11.05 kcal Atomic # 7 Polarization: -120.98 SS G_CDS: -5.65 Total: -126.63 kcal Atomic # 8 Polarization: -58.79 SS G_CDS: -0.08 Total: -58.87 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -76.31 1.03 -75.29 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569598958.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.156 kcal (2) G-P(sol) polarization free energy of solvation -76.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds