Wall clock time and date at job start Tue Mar 31 2020 23:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47112 * 2 1 4 4 C 1.52996 * 109.47280 * 119.99919 * 2 1 3 5 5 C 1.52992 * 109.47607 * 174.62456 * 4 2 1 6 6 H 1.09007 * 109.47192 * 52.85765 * 5 4 2 7 7 C 1.50697 * 109.47505 * 172.85794 * 5 4 2 8 8 N 1.34772 * 120.00269 * 293.44988 * 7 5 4 9 9 O 1.21288 * 119.99857 * 113.44818 * 7 5 4 10 10 C 1.50698 * 109.47244 * 292.86621 * 5 4 2 11 11 O 1.21276 * 120.00097 * 359.97438 * 10 5 4 12 12 N 1.34786 * 120.00146 * 179.97438 * 10 5 4 13 13 C 1.46498 * 120.00224 * 179.97438 * 12 10 5 14 14 H 1.09002 * 109.46728 * 34.99772 * 13 12 10 15 15 C 1.52998 * 109.47104 * 155.00027 * 13 12 10 16 16 C 1.53000 * 109.47008 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.46952 * 299.99629 * 16 15 13 18 18 H 1.09003 * 109.47483 * 300.00620 * 17 16 15 19 19 C 1.52995 * 109.47252 * 180.02562 * 17 16 15 20 20 N 1.46500 * 109.47406 * 175.00054 * 19 17 16 21 21 C 1.36935 * 120.00453 * 180.02562 * 20 19 17 22 22 H 1.08006 * 119.99886 * 359.97438 * 21 20 19 23 23 C 1.38813 * 120.00327 * 179.72379 * 21 20 19 24 24 N 1.31620 * 119.99687 * 0.27453 * 23 21 20 25 25 Si 1.86796 * 119.99914 * 180.27245 * 23 21 20 26 26 H 1.48500 * 109.47450 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46921 * 120.00398 * 25 23 21 28 28 H 1.48498 * 109.47014 * 239.99964 * 25 23 21 29 29 C 1.53002 * 109.47138 * 60.00025 * 17 16 15 30 30 C 1.52996 * 109.47448 * 300.00295 * 29 17 16 31 31 H 1.08994 * 109.47048 * 299.99955 * 1 2 3 32 32 H 1.09001 * 109.46888 * 59.99626 * 1 2 3 33 33 H 1.08996 * 109.47125 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47440 * 240.00476 * 2 1 3 35 35 H 1.09001 * 109.46783 * 65.28727 * 3 2 1 36 36 H 1.09002 * 109.47057 * 185.28298 * 3 2 1 37 37 H 1.09001 * 109.47222 * 305.28844 * 3 2 1 38 38 H 1.09001 * 109.46840 * 54.62642 * 4 2 1 39 39 H 1.08997 * 109.47405 * 294.63351 * 4 2 1 40 40 H 0.97002 * 119.99885 * 5.00088 * 8 7 5 41 41 H 0.96998 * 120.00165 * 184.99856 * 8 7 5 42 42 H 0.97000 * 119.99405 * 359.97438 * 12 10 5 43 43 H 1.08996 * 109.47157 * 59.99657 * 15 13 12 44 44 H 1.09000 * 109.46726 * 300.00013 * 15 13 12 45 45 H 1.08998 * 109.47148 * 179.97438 * 16 15 13 46 46 H 1.08996 * 109.47364 * 59.99896 * 16 15 13 47 47 H 1.09000 * 109.47331 * 55.00206 * 19 17 16 48 48 H 1.09003 * 109.47463 * 295.00200 * 19 17 16 49 49 H 0.97005 * 119.99852 * 0.02562 * 20 19 17 50 50 H 0.97002 * 119.99815 * 179.97438 * 24 23 21 51 51 H 1.09002 * 109.47189 * 59.99941 * 29 17 16 52 52 H 1.09001 * 109.47402 * 179.97438 * 29 17 16 53 53 H 1.09002 * 109.46636 * 299.99984 * 30 29 17 54 54 H 1.08998 * 109.47418 * 179.97438 * 30 29 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5640 -0.8393 1.1836 6 1 3.9974 0.1451 1.0068 7 6 4.0819 -1.3894 2.4874 8 7 3.9729 -0.6618 3.6166 9 8 4.5968 -2.4871 2.5207 10 6 3.9480 -1.7664 0.0592 11 8 3.0875 -2.2822 -0.6222 12 7 5.2478 -2.0222 -0.1892 13 6 5.6212 -2.9239 -1.2818 14 1 4.9193 -2.8045 -2.1072 15 6 7.0344 -2.5865 -1.7611 16 6 7.4241 -3.5277 -2.9026 17 6 7.3857 -4.9745 -2.4064 18 1 8.0875 -5.0943 -1.5810 19 6 7.7759 -5.9157 -3.5477 20 7 7.8553 -7.2887 -3.0429 21 6 8.1910 -8.3112 -3.8896 22 1 8.3969 -8.1055 -4.9297 23 6 8.2718 -9.6114 -3.4101 24 7 8.0205 -9.8621 -2.1427 25 14 8.7372 -11.0050 -4.5635 26 1 8.9684 -10.4632 -5.9267 27 1 9.9775 -11.6591 -4.0744 28 1 7.6363 -12.0007 -4.6063 29 6 5.9724 -5.3119 -1.9270 30 6 5.5827 -4.3706 -0.7855 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.7560 1.9282 0.9336 36 1 3.1259 1.4440 -0.0946 37 1 1.6014 1.9830 -0.8388 38 1 1.6002 -1.7173 1.2986 39 1 1.7573 -0.1549 2.1366 40 1 3.4971 0.1835 3.6049 41 1 4.3702 -0.9833 4.4410 42 1 5.9360 -1.6094 0.3556 43 1 7.7362 -2.7058 -0.9356 44 1 7.0616 -1.5559 -2.1150 45 1 8.4307 -3.2871 -3.2444 46 1 6.7223 -3.4080 -3.7279 47 1 8.7454 -5.6191 -3.9478 48 1 7.0253 -5.8613 -4.3363 49 1 7.6700 -7.4735 -2.1088 50 1 8.0766 -10.7707 -1.8076 51 1 5.2705 -5.1921 -2.7523 52 1 5.9449 -6.3427 -1.5738 53 1 6.2846 -4.4904 0.0398 54 1 4.5757 -4.6107 -0.4443 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570049324.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:40 Heat of formation + Delta-G solvation = -134.200287 kcal Electronic energy + Delta-G solvation = -30578.299796 eV Core-core repulsion = 26547.236839 eV Total energy + Delta-G solvation = -4031.062958 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.81816 -40.26844 -39.32654 -37.43727 -36.58545 -35.10093 -34.70755 -33.22041 -32.18698 -31.73048 -30.37883 -27.96240 -27.00316 -25.85926 -24.55823 -23.69653 -22.85968 -21.81059 -21.22020 -21.04424 -20.42890 -19.17920 -18.82566 -18.14455 -17.55295 -17.23425 -16.69271 -16.22025 -16.03232 -15.74222 -15.53481 -15.51330 -15.30324 -15.08202 -14.93225 -14.66121 -14.56236 -14.36283 -13.79285 -13.63415 -13.48096 -13.31095 -13.11512 -13.01018 -12.94660 -12.88353 -12.79559 -12.53049 -12.13507 -12.07176 -12.04960 -11.94380 -11.90299 -11.63249 -11.53767 -11.44108 -11.27766 -11.15031 -10.98994 -10.91712 -10.74057 -10.63799 -9.96357 -8.99502 -7.95820 -5.24614 1.44884 1.46132 1.46757 1.52532 1.56934 2.16806 2.55160 2.61747 3.37333 3.45597 3.69295 3.72659 3.77987 3.85829 3.94854 4.06558 4.11701 4.13937 4.17959 4.25394 4.42161 4.44379 4.47230 4.51224 4.56530 4.58610 4.75335 4.82564 4.85272 4.89640 4.93775 4.98320 5.05919 5.08067 5.09474 5.11886 5.16829 5.20463 5.22585 5.30759 5.37167 5.45615 5.48842 5.51998 5.55706 5.60434 5.63893 5.86449 6.26724 6.38215 6.56338 7.24381 7.29904 7.32103 8.10102 8.32868 9.28354 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018260 B = 0.002090 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.014687 B =13394.562594 C =13632.982727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 C -0.147 4.147 4 C -0.086 4.086 5 C -0.126 4.126 6 H 0.163 0.837 7 C 0.524 3.476 8 N -0.826 5.826 9 O -0.580 6.580 10 C 0.526 3.474 11 O -0.569 6.569 12 N -0.705 5.705 13 C 0.154 3.846 14 H 0.074 0.926 15 C -0.111 4.111 16 C -0.100 4.100 17 C -0.084 4.084 18 H 0.062 0.938 19 C 0.154 3.846 20 N -0.746 5.746 21 C -0.243 4.243 22 H 0.076 0.924 23 C -0.081 4.081 24 N -0.972 5.972 25 Si 0.977 3.023 26 H -0.264 1.264 27 H -0.291 1.291 28 H -0.294 1.294 29 C -0.099 4.099 30 C -0.112 4.112 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.037 0.963 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.045 0.955 39 H 0.108 0.892 40 H 0.421 0.579 41 H 0.411 0.589 42 H 0.409 0.591 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.068 0.932 47 H 0.025 0.975 48 H 0.016 0.984 49 H 0.372 0.628 50 H 0.251 0.749 51 H 0.054 0.946 52 H 0.036 0.964 53 H 0.057 0.943 54 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.627 33.879 11.389 37.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 C -0.204 4.204 4 C -0.124 4.124 5 C -0.150 4.150 6 H 0.180 0.820 7 C 0.308 3.692 8 N -0.391 5.391 9 O -0.459 6.459 10 C 0.312 3.688 11 O -0.448 6.448 12 N -0.355 5.355 13 C 0.049 3.951 14 H 0.092 0.908 15 C -0.149 4.149 16 C -0.138 4.138 17 C -0.102 4.102 18 H 0.080 0.920 19 C 0.028 3.972 20 N -0.389 5.389 21 C -0.375 4.375 22 H 0.094 0.906 23 C -0.273 4.273 24 N -0.624 5.624 25 Si 0.806 3.194 26 H -0.189 1.189 27 H -0.219 1.219 28 H -0.221 1.221 29 C -0.137 4.137 30 C -0.151 4.151 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.126 0.874 40 H 0.253 0.747 41 H 0.244 0.756 42 H 0.245 0.755 43 H 0.094 0.906 44 H 0.114 0.886 45 H 0.103 0.897 46 H 0.087 0.913 47 H 0.043 0.957 48 H 0.034 0.966 49 H 0.204 0.796 50 H 0.059 0.941 51 H 0.073 0.927 52 H 0.055 0.945 53 H 0.076 0.924 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -10.892 32.780 10.561 36.120 hybrid contribution 0.255 -1.452 0.437 1.537 sum -10.637 31.328 10.998 34.865 Atomic orbital electron populations 1.21776 0.94795 1.01051 1.02452 1.21181 0.96307 0.96984 0.97697 1.21921 1.01105 0.94326 1.03058 1.21449 0.89277 1.01338 1.00312 1.21728 1.00864 1.01966 0.90410 0.82003 1.20297 0.77902 0.84516 0.86489 1.43590 1.58684 1.25980 1.10835 1.90876 1.46141 1.21813 1.87057 1.20433 0.82512 0.81298 0.84583 1.90693 1.50058 1.52669 1.51367 1.45893 1.07416 1.47577 1.34587 1.20865 0.97616 0.87660 0.88920 0.90813 1.21719 0.93723 1.00556 0.98883 1.21423 1.02858 0.91648 0.97904 1.21242 0.95937 0.95673 0.97385 0.91989 1.20885 0.97279 0.83823 0.95203 1.42655 1.83612 1.02893 1.09745 1.19721 1.37098 0.87935 0.92776 0.90572 1.25638 1.03748 1.00078 0.97848 1.69849 1.57940 1.19704 1.14872 0.85019 0.76882 0.79080 0.78467 1.18852 1.21853 1.22124 1.21360 0.96745 0.97999 0.97637 1.21733 0.99984 0.95554 0.97847 0.90995 0.92573 0.94413 0.92531 0.90343 0.92158 0.92761 0.93580 0.87379 0.74680 0.75641 0.75540 0.90621 0.88576 0.89734 0.91314 0.95746 0.96565 0.79552 0.94064 0.92696 0.94504 0.92391 0.94552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.19 71.98 0.66 -1.20 16 2 C -0.10 -1.40 2.72 -10.79 -0.03 -1.43 16 3 C -0.15 -1.05 8.83 71.98 0.64 -0.42 16 4 C -0.09 -1.09 3.77 30.59 0.12 -0.98 16 5 C -0.13 -1.68 2.42 -12.29 -0.03 -1.71 16 6 H 0.16 0.82 6.39 -2.38 -0.02 0.81 16 7 C 0.52 8.02 7.20 87.66 0.63 8.65 16 8 N -0.83 -4.20 8.80 -173.53 -1.53 -5.72 16 9 O -0.58 -15.68 16.49 -3.05 -0.05 -15.73 16 10 C 0.53 12.38 6.24 87.65 0.55 12.93 16 11 O -0.57 -18.25 13.79 -3.02 -0.04 -18.29 16 12 N -0.71 -15.20 4.55 -442.54 -2.01 -17.21 16 13 C 0.15 3.93 2.45 44.99 0.11 4.04 16 14 H 0.07 2.12 7.58 -2.39 -0.02 2.10 16 15 C -0.11 -2.21 5.39 30.59 0.16 -2.04 16 16 C -0.10 -2.44 5.20 30.59 0.16 -2.28 16 17 C -0.08 -2.86 2.22 -10.80 -0.02 -2.88 16 18 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 19 C 0.15 6.56 5.65 86.38 0.49 7.05 16 20 N -0.75 -40.64 5.33 -343.45 -1.83 -42.47 16 21 C -0.24 -14.37 9.99 84.03 0.84 -13.53 16 22 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 23 C -0.08 -4.92 5.50 84.86 0.47 -4.45 16 24 N -0.97 -62.77 13.06 21.65 0.28 -62.49 16 25 Si 0.98 48.27 29.55 68.60 2.03 50.29 16 26 H -0.26 -12.19 7.11 99.48 0.71 -11.49 16 27 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 28 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 29 C -0.10 -3.66 5.08 30.59 0.16 -3.50 16 30 C -0.11 -3.71 5.50 30.59 0.17 -3.54 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 1.20 6.07 -2.39 -0.01 1.18 16 35 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 36 H 0.06 0.34 6.68 -2.39 -0.02 0.32 16 37 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.05 0.92 7.88 -2.39 -0.02 0.90 16 39 H 0.11 0.53 7.71 -2.39 -0.02 0.52 16 40 H 0.42 -1.05 8.48 -92.71 -0.79 -1.83 16 41 H 0.41 1.81 8.93 -92.71 -0.83 0.98 16 42 H 0.41 6.70 8.45 -92.71 -0.78 5.92 16 43 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 46 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.02 1.01 8.14 -2.39 -0.02 1.00 16 48 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.37 21.70 6.85 -92.70 -0.63 21.07 16 50 H 0.25 15.58 8.31 -92.71 -0.77 14.81 16 51 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 52 H 0.04 1.62 7.18 -2.39 -0.02 1.60 16 53 H 0.06 1.94 8.14 -2.39 -0.02 1.93 16 54 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -85.00 420.71 -0.21 -85.21 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: -2.11 Total: 31.71 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 5.06 Total: -5.30 kcal Atomic # 7 Polarization: -122.80 SS G_CDS: -5.09 Total: -127.89 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -0.09 Total: -34.02 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.03 Total: 50.29 kcal Total: -85.00 -0.21 -85.21 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570049324.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.988 kcal (2) G-P(sol) polarization free energy of solvation -85.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds