Wall clock time and date at job start Tue Mar 31 2020 22:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47276 * 2 1 4 4 C 1.52999 * 109.47193 * 184.41821 * 3 2 1 5 5 H 1.08998 * 109.47341 * 322.98632 * 4 3 2 6 6 C 1.50704 * 109.47399 * 202.98846 * 4 3 2 7 7 O 1.21280 * 119.99500 * 352.79103 * 6 4 3 8 8 N 1.34775 * 120.00131 * 172.79371 * 6 4 3 9 9 C 1.47020 * 125.64994 * 355.86882 * 8 6 4 10 10 C 1.54323 * 107.27363 * 178.98725 * 9 8 6 11 11 C 1.55161 * 102.93966 * 337.80721 * 10 9 8 12 12 H 1.08997 * 111.00016 * 277.42594 * 11 10 9 13 13 N 1.46901 * 111.00271 * 153.61117 * 11 10 9 14 14 C 1.46900 * 110.99764 * 89.57913 * 13 11 10 15 15 C 1.50706 * 109.47185 * 179.97438 * 14 13 11 16 16 O 1.21288 * 119.99794 * 0.02562 * 15 14 13 17 17 N 1.34771 * 119.99835 * 179.97438 * 15 14 13 18 18 C 1.37097 * 119.99765 * 179.97438 * 17 15 14 19 19 H 1.08001 * 120.00295 * 0.02562 * 18 17 15 20 20 C 1.38954 * 120.00228 * 179.97438 * 18 17 15 21 21 N 1.31422 * 119.99751 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00117 * 180.02562 * 20 18 17 23 23 H 1.48489 * 109.47373 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46958 * 120.00341 * 22 20 18 25 25 H 1.48501 * 109.46959 * 240.00190 * 22 20 18 26 26 C 1.47423 * 125.64615 * 175.92122 * 8 6 4 27 27 C 1.53002 * 109.47251 * 82.98545 * 4 3 2 28 28 C 1.53002 * 109.47121 * 299.15301 * 27 4 3 29 29 C 1.52998 * 109.47033 * 59.15291 * 27 4 3 30 30 H 1.09004 * 109.47131 * 300.00436 * 1 2 3 31 31 H 1.08995 * 109.46754 * 59.99721 * 1 2 3 32 32 H 1.08993 * 109.47285 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47175 * 239.99970 * 2 1 3 34 34 H 1.09007 * 109.47054 * 120.00029 * 2 1 3 35 35 H 1.09001 * 109.47432 * 64.42104 * 3 2 1 36 36 H 1.09001 * 109.47348 * 304.41506 * 3 2 1 37 37 H 1.08995 * 109.88077 * 59.56648 * 9 8 6 38 38 H 1.09005 * 110.01079 * 298.48108 * 9 8 6 39 39 H 1.08997 * 110.72095 * 219.44438 * 10 9 8 40 40 H 1.08997 * 110.71772 * 96.16785 * 10 9 8 41 41 H 1.00898 * 111.00265 * 325.63364 * 13 11 10 42 42 H 1.08997 * 109.47585 * 300.00571 * 14 13 11 43 43 H 1.09005 * 109.47356 * 59.99841 * 14 13 11 44 44 H 0.97005 * 120.00386 * 0.02562 * 17 15 14 45 45 H 0.97000 * 119.99817 * 179.97438 * 21 20 18 46 46 H 1.09004 * 110.36322 * 85.24789 * 26 8 6 47 47 H 1.08995 * 110.37038 * 322.92044 * 26 8 6 48 48 H 1.09005 * 109.47302 * 179.15365 * 27 4 3 49 49 H 1.08998 * 109.47038 * 75.44303 * 28 27 4 50 50 H 1.09000 * 109.46855 * 195.44677 * 28 27 4 51 51 H 1.08998 * 109.46754 * 315.44299 * 28 27 4 52 52 H 1.09001 * 109.47135 * 181.43396 * 29 27 4 53 53 H 1.09007 * 109.46989 * 301.43335 * 29 27 4 54 54 H 1.09001 * 109.47107 * 61.42942 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5660 1.4439 -0.1111 5 1 3.9725 0.6080 0.4582 6 6 4.1086 2.7376 0.4392 7 8 3.3485 3.6280 0.7558 8 7 5.4385 2.9052 0.5795 9 6 6.4632 1.8839 0.3176 10 6 7.8368 2.5330 0.5882 11 6 7.5398 4.0488 0.4415 12 1 7.5576 4.3508 -0.6057 13 7 8.4830 4.8493 1.2337 14 6 9.6751 5.1902 0.4459 15 6 10.6172 6.0100 1.2894 16 8 10.3245 6.2830 2.4344 17 7 11.7853 6.4389 0.7719 18 6 12.6421 7.1852 1.5391 19 1 12.3811 7.4290 2.5584 20 6 13.8467 7.6270 1.0058 21 7 14.1645 7.3299 -0.2343 22 14 15.0143 8.6432 2.0514 23 1 14.4278 8.8377 3.4016 24 1 16.3134 7.9343 2.1739 25 1 15.2303 9.9650 1.4099 26 6 6.1066 4.1425 1.0221 27 6 3.9705 1.3050 -1.5801 28 6 3.4377 -0.0184 -2.1330 29 6 3.3822 2.4669 -2.3831 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.7429 1.9330 0.9269 36 1 1.6136 1.9787 -0.8478 37 1 6.4051 1.5584 -0.7210 38 1 6.3186 1.0316 0.9816 39 1 8.5686 2.2100 -0.1522 40 1 8.1799 2.3031 1.5969 41 1 8.7369 4.3711 2.0851 42 1 10.1745 4.2750 0.1279 43 1 9.3788 5.7658 -0.4311 44 1 12.0196 6.2203 -0.1437 45 1 15.0053 7.6386 -0.6068 46 1 6.1405 4.1868 2.1107 47 1 5.5916 5.0158 0.6219 48 1 5.0575 1.3211 -1.6608 49 1 2.3653 0.0668 -2.3088 50 1 3.9425 -0.2499 -3.0709 51 1 3.6257 -0.8148 -1.4130 52 1 3.6491 2.3543 -3.4339 53 1 2.2969 2.4659 -2.2817 54 1 3.7815 3.4083 -2.0057 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661352910.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:44 Heat of formation + Delta-G solvation = -104.457335 kcal Electronic energy + Delta-G solvation = -30014.097276 eV Core-core repulsion = 25984.324069 eV Total energy + Delta-G solvation = -4029.773206 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.60874 -40.22870 -39.22155 -37.92374 -36.21537 -35.57855 -34.26062 -33.26821 -31.76321 -30.53682 -29.80018 -28.21101 -27.87343 -26.23833 -25.30717 -24.11723 -22.16265 -21.89588 -21.27374 -21.02712 -19.92359 -19.83039 -18.12508 -17.66727 -17.55019 -17.11826 -16.81963 -16.50052 -16.29059 -15.86433 -15.40942 -15.24456 -15.14188 -14.72182 -14.48640 -14.34527 -14.12709 -14.06968 -13.96174 -13.84559 -13.68075 -13.48585 -13.22604 -13.13926 -12.97769 -12.84823 -12.78993 -12.70048 -12.44721 -12.40578 -12.27381 -12.11433 -12.08061 -11.83341 -11.72726 -11.71121 -11.51309 -11.26435 -10.84835 -10.74155 -10.35881 -10.01051 -9.68213 -9.31818 -8.46887 -5.95284 1.36677 1.42430 1.56191 1.59687 1.89302 2.05605 2.29821 2.91000 3.20641 3.34759 3.48119 3.65365 3.68695 3.78678 3.85172 4.00272 4.14632 4.18880 4.24725 4.26272 4.31666 4.36285 4.38333 4.50126 4.54903 4.58879 4.60654 4.70027 4.73049 4.78426 4.84750 4.86340 4.90724 4.97521 5.01620 5.04360 5.07285 5.11339 5.13011 5.19428 5.25034 5.29569 5.40297 5.41673 5.44372 5.50848 5.64367 5.88034 6.08754 6.35336 6.51290 6.60408 7.13146 7.13549 7.56706 8.12278 8.70556 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.032454 B = 0.001729 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.551568 B =16189.859316 C =16530.848875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.138 4.138 3 C -0.104 4.104 4 C -0.092 4.092 5 H 0.114 0.886 6 C 0.527 3.473 7 O -0.589 6.589 8 N -0.617 5.617 9 C 0.100 3.900 10 C -0.158 4.158 11 C 0.085 3.915 12 H 0.102 0.898 13 N -0.675 5.675 14 C 0.070 3.930 15 C 0.436 3.564 16 O -0.625 6.625 17 N -0.572 5.572 18 C -0.334 4.334 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.919 5.919 22 Si 0.992 3.008 23 H -0.275 1.275 24 H -0.270 1.270 25 H -0.272 1.272 26 C 0.117 3.883 27 C -0.084 4.084 28 C -0.148 4.148 29 C -0.153 4.153 30 H 0.041 0.959 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.043 0.957 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.079 0.921 41 H 0.349 0.651 42 H 0.078 0.922 43 H 0.103 0.897 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.058 0.942 47 H 0.058 0.942 48 H 0.087 0.913 49 H 0.067 0.933 50 H 0.066 0.934 51 H 0.074 0.926 52 H 0.070 0.930 53 H 0.060 0.940 54 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.271 -21.798 -8.412 30.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.175 4.175 3 C -0.142 4.142 4 C -0.113 4.113 5 H 0.132 0.868 6 C 0.317 3.683 7 O -0.469 6.469 8 N -0.351 5.351 9 C -0.022 4.022 10 C -0.198 4.198 11 C -0.026 4.026 12 H 0.120 0.880 13 N -0.307 5.307 14 C -0.062 4.062 15 C 0.224 3.776 16 O -0.512 6.512 17 N -0.209 5.209 18 C -0.464 4.464 19 H 0.095 0.905 20 C -0.211 4.211 21 N -0.560 5.560 22 Si 0.816 3.184 23 H -0.200 1.200 24 H -0.195 1.195 25 H -0.197 1.197 26 C -0.007 4.007 27 C -0.102 4.102 28 C -0.204 4.204 29 C -0.210 4.210 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.124 0.876 40 H 0.097 0.903 41 H 0.169 0.831 42 H 0.095 0.905 43 H 0.121 0.879 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.105 0.895 49 H 0.085 0.915 50 H 0.085 0.915 51 H 0.093 0.907 52 H 0.089 0.911 53 H 0.078 0.922 54 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -21.078 -20.512 -7.734 30.411 hybrid contribution 1.207 0.354 0.400 1.320 sum -19.871 -20.158 -7.333 29.240 Atomic orbital electron populations 1.21772 0.95994 1.01984 1.01386 1.22051 0.96028 0.95345 1.04094 1.21543 0.92482 0.98168 1.02032 1.21490 0.97563 0.93748 0.98454 0.86793 1.21073 0.80129 0.90321 0.76756 1.90682 1.57616 1.46049 1.52550 1.48553 1.05635 1.14443 1.66435 1.22324 0.85846 0.90945 1.03079 1.23412 0.97237 0.95055 1.04056 1.22677 0.90497 0.91607 0.97852 0.87954 1.59820 1.14345 1.48952 1.07584 1.21531 0.89921 0.99054 0.95739 1.20925 0.83306 0.84837 0.88553 1.90504 1.76734 1.62803 1.21163 1.41917 1.16610 1.47413 1.14992 1.19696 0.99352 1.29838 0.97511 0.90457 1.26005 0.98873 0.98790 0.97452 1.69672 1.25189 1.46621 1.14479 0.84888 0.77704 0.77922 0.77927 1.19967 1.19472 1.19722 1.21966 0.92458 0.87264 0.99049 1.21167 1.01371 0.96768 0.90916 1.22098 1.01645 0.95156 1.01539 1.21971 1.01334 0.97052 1.00619 0.93954 0.92783 0.91664 0.88156 0.91904 0.93816 0.91449 0.88563 0.89410 0.87629 0.90251 0.83059 0.90463 0.87853 0.76858 0.91296 0.92381 0.92362 0.89454 0.91464 0.91500 0.90748 0.91077 0.92161 0.95422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 71.98 0.71 -0.96 16 2 C -0.14 -1.44 5.41 30.59 0.17 -1.28 16 3 C -0.10 -1.68 4.06 30.59 0.12 -1.55 16 4 C -0.09 -1.34 1.51 -11.54 -0.02 -1.36 16 5 H 0.11 1.20 7.84 -2.39 -0.02 1.19 16 6 C 0.53 12.33 5.89 87.66 0.52 12.85 16 7 O -0.59 -19.52 15.92 -3.03 -0.05 -19.56 16 8 N -0.62 -12.66 3.33 -811.80 -2.70 -15.36 16 9 C 0.10 1.24 6.20 86.73 0.54 1.78 16 10 C -0.16 -2.30 6.56 31.78 0.21 -2.09 16 11 C 0.08 1.82 3.34 46.31 0.15 1.98 16 12 H 0.10 2.05 7.87 -2.39 -0.02 2.03 16 13 N -0.68 -20.08 6.02 -488.38 -2.94 -23.01 16 14 C 0.07 2.21 6.05 85.56 0.52 2.73 16 15 C 0.44 20.25 7.82 87.66 0.69 20.94 16 16 O -0.63 -34.46 15.78 -3.05 -0.05 -34.51 16 17 N -0.57 -28.77 5.29 -306.99 -1.62 -30.40 16 18 C -0.33 -18.87 9.68 84.04 0.81 -18.06 16 19 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 20 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 21 N -0.92 -48.84 13.05 21.67 0.28 -48.56 16 22 Si 0.99 42.72 29.55 68.60 2.03 44.74 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 25 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 26 C 0.12 2.93 6.59 86.86 0.57 3.50 16 27 C -0.08 -0.90 2.65 -10.79 -0.03 -0.93 16 28 C -0.15 -0.92 7.48 71.98 0.54 -0.38 16 29 C -0.15 -2.23 8.61 71.98 0.62 -1.61 16 30 H 0.04 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.10 0.71 3.79 -2.39 -0.01 0.70 16 34 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.04 0.96 7.35 -2.39 -0.02 0.94 16 36 H 0.07 1.16 5.53 -2.39 -0.01 1.15 16 37 H 0.10 0.80 5.64 -2.39 -0.01 0.78 16 38 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.08 1.23 7.78 -2.39 -0.02 1.21 16 41 H 0.35 10.84 7.95 -89.70 -0.71 10.13 16 42 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.10 2.99 8.09 -2.38 -0.02 2.97 16 44 H 0.40 18.78 7.90 -92.70 -0.73 18.05 16 45 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 46 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.06 1.72 8.08 -2.39 -0.02 1.70 16 48 H 0.09 0.80 5.31 -2.38 -0.01 0.78 16 49 H 0.07 0.44 6.26 -2.39 -0.01 0.43 16 50 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 51 H 0.07 0.30 7.29 -2.39 -0.02 0.28 16 52 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 53 H 0.06 0.91 5.94 -2.38 -0.01 0.90 16 54 H 0.03 0.55 7.29 -2.39 -0.02 0.53 16 Total: -1.00 -74.17 414.30 1.01 -73.16 By element: Atomic # 1 Polarization: 38.61 SS G_CDS: -0.53 Total: 38.08 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 6.59 Total: 15.42 kcal Atomic # 7 Polarization: -110.35 SS G_CDS: -6.98 Total: -117.33 kcal Atomic # 8 Polarization: -53.98 SS G_CDS: -0.10 Total: -54.08 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -74.17 1.01 -73.16 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661352910.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.295 kcal (2) G-P(sol) polarization free energy of solvation -74.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds