Wall clock time and date at job start Tue Mar 31 2020 22:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47265 * 2 1 4 4 C 1.53002 * 109.47375 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46647 * 55.00182 * 4 3 2 6 6 C 1.52998 * 109.47317 * 295.00293 * 4 3 2 7 7 C 1.50691 * 109.47207 * 174.99637 * 4 3 2 8 8 O 1.21283 * 119.99865 * 22.40089 * 7 4 3 9 9 N 1.34777 * 120.00161 * 202.39971 * 7 4 3 10 10 C 1.47029 * 125.64828 * 174.20851 * 9 7 4 11 11 C 1.54366 * 107.28433 * 181.12736 * 10 9 7 12 12 C 1.55154 * 102.92646 * 22.13885 * 11 10 9 13 13 H 1.09002 * 111.00573 * 82.63639 * 12 11 10 14 14 C 1.52993 * 111.00830 * 206.44924 * 12 11 10 15 15 N 1.46898 * 109.47647 * 290.41933 * 14 12 11 16 16 C 1.46902 * 110.99436 * 293.95595 * 15 14 12 17 17 C 1.46896 * 111.00197 * 169.99852 * 15 14 12 18 18 C 1.50699 * 109.46705 * 189.99819 * 17 15 14 19 19 O 1.21288 * 120.00698 * 0.02562 * 18 17 15 20 20 N 1.34785 * 119.99827 * 179.97438 * 18 17 15 21 21 C 1.37099 * 120.00024 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99914 * 359.97438 * 21 20 18 23 23 C 1.38947 * 119.99693 * 179.97438 * 21 20 18 24 24 N 1.31414 * 120.00218 * 359.72820 * 23 21 20 25 25 Si 1.86806 * 119.99699 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47014 * 269.72572 * 25 23 21 27 27 H 1.48500 * 109.47139 * 29.72989 * 25 23 21 28 28 H 1.48496 * 109.46840 * 149.72354 * 25 23 21 29 29 C 1.47422 * 125.64866 * 354.25023 * 9 7 4 30 30 H 1.08999 * 109.47095 * 60.00590 * 1 2 3 31 31 H 1.09003 * 109.47309 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47371 * 300.00139 * 1 2 3 33 33 H 1.09001 * 109.47659 * 239.99340 * 2 1 3 34 34 H 1.09003 * 109.46630 * 119.99548 * 2 1 3 35 35 H 1.09002 * 109.47222 * 59.99680 * 3 2 1 36 36 H 1.08999 * 109.46582 * 299.99724 * 3 2 1 37 37 H 1.08998 * 109.47351 * 186.49807 * 6 4 3 38 38 H 1.09000 * 109.46918 * 306.49334 * 6 4 3 39 39 H 1.09003 * 109.47263 * 66.48928 * 6 4 3 40 40 H 1.08998 * 109.87829 * 300.51151 * 10 9 7 41 41 H 1.08991 * 109.88060 * 61.67793 * 10 9 7 42 42 H 1.08997 * 110.70823 * 263.79472 * 11 10 9 43 43 H 1.08998 * 110.75476 * 140.50659 * 11 10 9 44 44 H 1.09001 * 109.46886 * 170.41281 * 14 12 11 45 45 H 1.09004 * 109.46803 * 50.42330 * 14 12 11 46 46 H 1.09001 * 109.46744 * 296.03835 * 16 15 14 47 47 H 1.08999 * 109.47969 * 56.04008 * 16 15 14 48 48 H 1.09000 * 109.46539 * 176.04695 * 16 15 14 49 49 H 1.09002 * 109.47294 * 70.00216 * 17 15 14 50 50 H 1.08994 * 109.46988 * 309.99615 * 17 15 14 51 51 H 0.97004 * 119.99741 * 359.97438 * 20 18 17 52 52 H 0.96994 * 119.99761 * 0.26745 * 24 23 21 53 53 H 1.09003 * 110.36335 * 36.99425 * 29 9 7 54 54 H 1.09002 * 110.36448 * 274.67628 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9336 0.8529 -0.8410 6 6 4.0795 0.8330 1.3082 7 6 4.0724 2.8578 -0.1233 8 8 3.3588 3.7848 0.1969 9 7 5.3146 3.0936 -0.5899 10 6 5.8861 4.4181 -0.8742 11 6 7.3151 4.1948 -1.4136 12 6 7.2651 2.7342 -1.9348 13 1 6.8374 2.6912 -2.9365 14 6 8.6544 2.0941 -1.9071 15 7 9.5035 2.7221 -2.9282 16 6 9.0088 2.4253 -4.2792 17 6 10.9041 2.3057 -2.7770 18 6 11.7775 3.1472 -3.6715 19 8 11.2822 4.0092 -4.3662 20 7 13.1095 2.9425 -3.6988 21 6 13.9042 3.7084 -4.5122 22 1 13.4629 4.4754 -5.1313 23 6 15.2773 3.4977 -4.5399 24 7 15.8148 2.5679 -3.7825 25 14 16.3600 4.5407 -5.6486 26 1 16.4888 3.8842 -6.9744 27 1 15.7475 5.8828 -5.8182 28 1 17.7044 4.6843 -5.0346 29 6 6.3251 2.0661 -0.9006 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 1.6766 1.9563 0.8900 36 1 1.6767 1.9562 -0.8900 37 1 5.1632 0.9375 1.3598 38 1 3.6240 1.3510 2.1522 39 1 3.8141 -0.2236 1.3443 40 1 5.2828 4.9287 -1.6248 41 1 5.9230 5.0099 0.0403 42 1 8.0489 4.2938 -0.6137 43 1 7.5337 4.8871 -2.2267 44 1 8.5671 1.0273 -2.1130 45 1 9.1016 2.2388 -0.9235 46 1 9.0766 1.3531 -4.4635 47 1 7.9698 2.7435 -4.3639 48 1 9.6132 2.9589 -5.0127 49 1 11.0033 1.2565 -3.0552 50 1 11.2124 2.4375 -1.7399 51 1 13.5058 2.2538 -3.1424 52 1 15.2526 2.0262 -3.2071 53 1 5.8500 1.1854 -1.3330 54 1 6.8802 1.7961 -0.0022 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664796477.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:00 Heat of formation + Delta-G solvation = -105.558512 kcal Electronic energy + Delta-G solvation = -29715.222625 eV Core-core repulsion = 25685.401668 eV Total energy + Delta-G solvation = -4029.820957 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.39533 -40.48532 -39.21260 -37.50039 -36.86640 -36.16822 -33.49058 -33.11614 -32.49216 -30.56380 -29.28960 -27.67288 -27.57271 -26.39780 -25.49876 -23.82647 -23.14017 -21.66892 -21.32304 -20.95915 -19.97353 -19.88593 -18.25792 -18.14414 -17.37299 -16.89886 -16.63505 -16.57366 -16.23545 -15.96074 -15.57918 -15.34275 -15.25933 -15.04007 -14.88482 -14.61996 -14.17766 -14.14042 -13.79179 -13.74172 -13.53296 -13.33070 -13.30377 -13.12244 -12.97799 -12.81651 -12.70466 -12.60951 -12.38638 -12.20052 -12.06620 -11.93630 -11.88744 -11.86349 -11.82837 -11.72987 -11.47307 -11.44356 -11.41363 -10.76818 -10.29477 -10.05635 -9.72109 -9.16507 -8.89420 -6.02970 1.53602 1.55608 1.56336 1.82683 1.92431 2.05980 2.40847 2.70936 3.19507 3.28797 3.37313 3.65218 3.73480 3.81582 3.84120 3.96105 4.12818 4.20121 4.27957 4.30817 4.31699 4.35380 4.35454 4.41481 4.49005 4.50436 4.61178 4.62294 4.67702 4.73711 4.77514 4.79263 4.87847 4.88799 4.92161 4.98642 5.00175 5.07257 5.13763 5.19510 5.21769 5.26387 5.33201 5.37266 5.41582 5.49061 5.63285 5.96516 6.02210 6.22136 6.47879 6.62466 6.80254 7.08903 7.49237 7.99509 8.58695 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.030194 B = 0.001680 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.105762 B =16660.895275 C =16933.302737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.099 4.099 4 C -0.100 4.100 5 H 0.115 0.885 6 C -0.139 4.139 7 C 0.524 3.476 8 O -0.591 6.591 9 N -0.618 5.618 10 C 0.105 3.895 11 C -0.108 4.108 12 C -0.090 4.090 13 H 0.084 0.916 14 C 0.068 3.932 15 N -0.535 5.535 16 C 0.026 3.974 17 C 0.059 3.941 18 C 0.445 3.555 19 O -0.609 6.609 20 N -0.590 5.590 21 C -0.407 4.407 22 H 0.071 0.929 23 C -0.042 4.042 24 N -0.919 5.919 25 Si 1.134 2.866 26 H -0.271 1.271 27 H -0.279 1.279 28 H -0.274 1.274 29 C 0.108 3.892 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.048 0.952 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.089 0.911 46 H 0.030 0.970 47 H 0.080 0.920 48 H 0.049 0.951 49 H 0.070 0.930 50 H 0.112 0.888 51 H 0.384 0.616 52 H 0.260 0.740 53 H 0.103 0.897 54 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.870 -10.946 10.195 28.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.138 4.138 4 C -0.121 4.121 5 H 0.133 0.867 6 C -0.196 4.196 7 C 0.314 3.686 8 O -0.472 6.472 9 N -0.351 5.351 10 C -0.018 4.018 11 C -0.146 4.146 12 C -0.110 4.110 13 H 0.103 0.897 14 C -0.059 4.059 15 N -0.260 5.260 16 C -0.122 4.122 17 C -0.072 4.072 18 C 0.233 3.767 19 O -0.494 6.494 20 N -0.230 5.230 21 C -0.537 4.537 22 H 0.089 0.911 23 C -0.240 4.240 24 N -0.558 5.558 25 Si 0.954 3.046 26 H -0.197 1.197 27 H -0.205 1.205 28 H -0.199 1.199 29 C -0.015 4.015 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.112 0.888 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.108 0.892 46 H 0.049 0.951 47 H 0.099 0.901 48 H 0.068 0.932 49 H 0.087 0.913 50 H 0.130 0.870 51 H 0.218 0.782 52 H 0.071 0.929 53 H 0.121 0.879 54 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -23.103 -9.121 9.522 26.601 hybrid contribution -1.236 -0.786 0.458 1.535 sum -24.340 -9.907 9.980 28.110 Atomic orbital electron populations 1.21785 0.95849 1.02108 1.01532 1.21556 0.95951 0.94923 1.03199 1.21434 0.92461 0.98071 1.01791 1.21374 0.97404 0.90924 1.02440 0.86733 1.21786 1.01542 1.02243 0.94078 1.21133 0.79488 0.92585 0.75364 1.90673 1.57166 1.47936 1.51395 1.48646 1.13252 1.08804 1.64364 1.21959 0.94757 0.85309 0.99792 1.22495 0.93819 0.97344 1.00958 1.22306 0.94592 0.94746 0.99341 0.89732 1.22113 0.91616 0.96579 0.95611 1.61443 1.00283 1.59906 1.04337 1.22438 1.01048 0.98454 0.90273 1.21737 0.88774 0.96591 1.00076 1.20887 0.82502 0.87014 0.86343 1.90475 1.73972 1.37746 1.47232 1.42014 1.06499 1.34247 1.40233 1.20511 0.92062 1.17904 1.23206 0.91069 1.27726 0.96097 0.99559 1.00637 1.70941 1.38410 1.21064 1.25430 0.82606 0.74016 0.73922 0.74029 1.19651 1.20463 1.19852 1.22530 0.88893 0.91124 0.98925 0.93285 0.91636 0.93142 0.90902 0.90460 0.92736 0.93260 0.91499 0.93238 0.88801 0.92720 0.92358 0.90254 0.90918 0.92350 0.89236 0.95144 0.90136 0.93218 0.91257 0.87033 0.78205 0.92931 0.87929 0.89142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.91 71.98 0.71 -0.83 16 2 C -0.12 -1.11 5.69 30.59 0.17 -0.93 16 3 C -0.10 -1.46 4.09 30.59 0.13 -1.33 16 4 C -0.10 -1.33 2.12 -11.54 -0.02 -1.35 16 5 H 0.11 1.00 6.90 -2.39 -0.02 0.98 16 6 C -0.14 -1.35 8.75 71.98 0.63 -0.72 16 7 C 0.52 11.29 6.97 87.65 0.61 11.90 16 8 O -0.59 -18.26 16.50 -3.04 -0.05 -18.31 16 9 N -0.62 -11.48 3.33 -811.71 -2.70 -14.18 16 10 C 0.10 2.19 6.87 86.74 0.60 2.78 16 11 C -0.11 -2.11 6.32 31.80 0.20 -1.91 16 12 C -0.09 -1.43 2.95 -9.40 -0.03 -1.46 16 13 H 0.08 1.45 6.34 -2.39 -0.02 1.43 16 14 C 0.07 1.18 4.40 86.30 0.38 1.56 16 15 N -0.54 -14.77 4.39 -927.07 -4.07 -18.84 16 16 C 0.03 0.73 9.03 127.69 1.15 1.89 16 17 C 0.06 1.83 5.45 85.56 0.47 2.30 16 18 C 0.44 20.24 7.51 87.66 0.66 20.90 16 19 O -0.61 -32.75 13.89 -3.05 -0.04 -32.79 16 20 N -0.59 -29.20 5.28 -306.98 -1.62 -30.82 16 21 C -0.41 -23.00 9.68 84.04 0.81 -22.18 16 22 H 0.07 4.35 7.16 -2.91 -0.02 4.33 16 23 C -0.04 -2.26 5.50 84.93 0.47 -1.79 16 24 N -0.92 -50.58 13.68 21.66 0.30 -50.29 16 25 Si 1.13 48.31 29.92 68.60 2.05 50.37 16 26 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 27 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 29 C 0.11 1.27 5.70 86.86 0.49 1.77 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.08 0.55 6.71 -2.39 -0.02 0.54 16 35 H 0.05 0.99 8.04 -2.39 -0.02 0.97 16 36 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 0.57 7.49 -2.39 -0.02 0.55 16 38 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.09 0.50 6.89 -2.39 -0.02 0.48 16 40 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.08 1.53 7.96 -2.39 -0.02 1.52 16 43 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.06 0.79 8.12 -2.39 -0.02 0.77 16 45 H 0.09 1.36 7.83 -2.38 -0.02 1.34 16 46 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.08 1.93 6.23 -2.39 -0.01 1.91 16 48 H 0.05 1.89 5.88 -2.39 -0.01 1.88 16 49 H 0.07 1.86 8.12 -2.39 -0.02 1.84 16 50 H 0.11 2.93 7.93 -2.39 -0.02 2.91 16 51 H 0.38 17.33 6.73 -92.71 -0.62 16.71 16 52 H 0.26 13.75 6.77 -92.71 -0.63 13.13 16 53 H 0.10 0.75 6.84 -2.39 -0.02 0.73 16 54 H 0.09 0.82 7.90 -2.39 -0.02 0.80 16 Total: -1.00 -76.31 420.53 1.69 -74.62 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 0.39 Total: 29.67 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 7.43 Total: 10.58 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -8.10 Total: -114.13 kcal Atomic # 8 Polarization: -51.01 SS G_CDS: -0.09 Total: -51.10 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 2.05 Total: 50.37 kcal Total: -76.31 1.69 -74.62 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664796477.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.940 kcal (2) G-P(sol) polarization free energy of solvation -76.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds