Wall clock time and date at job start Tue Mar 31 2020 22:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46856 * 2 1 4 4 C 1.53001 * 109.47091 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46853 * 305.00209 * 4 3 2 6 6 C 1.53008 * 109.47032 * 64.99753 * 4 3 2 7 7 C 1.50697 * 109.47056 * 184.99735 * 4 3 2 8 8 O 1.21276 * 120.00093 * 333.88785 * 7 4 3 9 9 N 1.34784 * 119.99731 * 153.88313 * 7 4 3 10 10 C 1.47024 * 125.64656 * 354.67154 * 9 7 4 11 11 C 1.54323 * 107.26969 * 181.02322 * 10 9 7 12 12 C 1.55157 * 102.94347 * 22.18762 * 11 10 9 13 13 H 1.09004 * 111.03395 * 82.58553 * 12 11 10 14 14 C 1.52992 * 111.00840 * 206.42542 * 12 11 10 15 15 N 1.46901 * 109.47211 * 287.19772 * 14 12 11 16 16 C 1.46901 * 110.99883 * 293.95324 * 15 14 12 17 17 C 1.46898 * 111.00028 * 169.99735 * 15 14 12 18 18 C 1.50706 * 109.47243 * 189.99896 * 17 15 14 19 19 O 1.21299 * 119.99756 * 0.02562 * 18 17 15 20 20 N 1.34775 * 120.00106 * 179.97438 * 18 17 15 21 21 C 1.37104 * 119.99696 * 179.97438 * 20 18 17 22 22 H 1.07995 * 120.00409 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99694 * 180.02562 * 21 20 18 24 24 N 1.31418 * 120.00078 * 359.72880 * 23 21 20 25 25 Si 1.86800 * 119.99918 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47427 * 269.72541 * 25 23 21 27 27 H 1.48501 * 109.47054 * 29.72783 * 25 23 21 28 28 H 1.48499 * 109.47091 * 149.72414 * 25 23 21 29 29 C 1.47421 * 125.64847 * 174.62404 * 9 7 4 30 30 H 1.08998 * 109.47749 * 59.99829 * 1 2 3 31 31 H 1.09003 * 109.47497 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47008 * 299.99779 * 1 2 3 33 33 H 1.09001 * 109.47008 * 240.00221 * 2 1 3 34 34 H 1.08997 * 109.47543 * 119.99659 * 2 1 3 35 35 H 1.09001 * 109.47132 * 60.00297 * 3 2 1 36 36 H 1.09001 * 109.47142 * 299.99819 * 3 2 1 37 37 H 1.08997 * 109.47157 * 184.13989 * 6 4 3 38 38 H 1.09000 * 109.47105 * 304.14675 * 6 4 3 39 39 H 1.09006 * 109.46883 * 64.14294 * 6 4 3 40 40 H 1.08997 * 109.87959 * 300.43897 * 10 9 7 41 41 H 1.08994 * 109.88587 * 61.60328 * 10 9 7 42 42 H 1.08995 * 110.71639 * 263.83158 * 11 10 9 43 43 H 1.08997 * 110.72221 * 140.55327 * 11 10 9 44 44 H 1.09000 * 109.47820 * 167.19554 * 14 12 11 45 45 H 1.09002 * 109.46932 * 47.19815 * 14 12 11 46 46 H 1.08999 * 109.47068 * 296.04050 * 16 15 14 47 47 H 1.08989 * 109.47471 * 56.04625 * 16 15 14 48 48 H 1.09007 * 109.46540 * 176.04664 * 16 15 14 49 49 H 1.09004 * 109.47268 * 70.00146 * 17 15 14 50 50 H 1.09005 * 109.47508 * 309.99919 * 17 15 14 51 51 H 0.97000 * 120.00346 * 0.02562 * 20 18 17 52 52 H 0.97000 * 119.99805 * 0.27358 * 24 23 21 53 53 H 1.09004 * 110.36595 * 37.07041 * 29 9 7 54 54 H 1.09001 * 110.46099 * 274.79909 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9336 0.8530 0.8409 6 6 4.0794 0.8331 -1.3083 7 6 4.0722 2.8580 0.1231 8 8 3.3850 3.7810 -0.2598 9 7 5.2852 3.0981 0.6594 10 6 6.1705 2.0905 1.2615 11 6 7.4307 2.8279 1.7614 12 6 6.9373 4.2902 1.9212 13 1 6.4282 4.4293 2.8749 14 6 8.0949 5.2791 1.7714 15 7 8.9491 5.2176 2.9650 16 6 8.2300 5.6985 4.1523 17 6 10.1931 5.9718 2.7615 18 6 11.1439 5.6880 3.8959 19 8 10.8174 4.9314 4.7860 20 7 12.3573 6.2741 3.9208 21 6 13.2220 6.0162 4.9531 22 1 12.9310 5.3433 5.7460 23 6 14.4728 6.6208 4.9790 24 7 14.8290 7.4356 4.0113 25 14 15.6512 6.2691 6.3851 26 1 15.4329 7.2563 7.4727 27 1 15.4079 4.8991 6.9038 28 1 17.0497 6.3722 5.8964 29 6 5.9444 4.4144 0.7386 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 5.1669 0.7656 -1.2783 38 1 3.6566 -0.1637 -1.4336 39 1 3.7775 1.4635 -2.1448 40 1 5.6669 1.6076 2.0990 41 1 6.4480 1.3469 0.5145 42 1 8.2301 2.7692 1.0228 43 1 7.7589 2.4247 2.7194 44 1 7.6986 6.2884 1.6599 45 1 8.6823 5.0202 0.8905 46 1 7.9830 6.7525 4.0253 47 1 7.3131 5.1232 4.2796 48 1 8.8606 5.5767 5.0330 49 1 9.9707 7.0385 2.7322 50 1 10.6511 5.6701 1.8195 51 1 12.6186 6.8788 3.2088 52 1 14.2172 7.6180 3.2811 53 1 5.2104 5.1947 0.9399 54 1 6.4805 4.6283 -0.1860 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664796478.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:03 Heat of formation + Delta-G solvation = -105.303200 kcal Electronic energy + Delta-G solvation = -29587.735882 eV Core-core repulsion = 25557.925996 eV Total energy + Delta-G solvation = -4029.809886 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.38823 -40.50498 -39.22302 -37.52624 -36.87762 -36.18199 -33.56186 -33.11589 -32.39466 -30.49618 -29.34233 -27.88917 -27.60204 -26.49593 -25.25546 -23.60795 -23.42009 -21.69703 -21.30103 -21.09396 -19.92479 -19.82842 -18.28402 -18.18734 -17.36339 -16.94823 -16.61661 -16.45436 -16.18117 -16.10516 -15.63075 -15.36066 -15.31897 -15.14730 -14.87443 -14.57349 -14.19675 -14.01322 -13.82014 -13.74771 -13.57930 -13.37139 -13.31009 -13.13317 -13.03415 -12.80399 -12.73710 -12.63802 -12.40694 -12.22377 -12.05644 -11.92922 -11.91701 -11.85834 -11.81650 -11.73372 -11.49007 -11.44243 -11.43241 -10.75815 -10.31234 -10.06576 -9.70194 -9.23496 -8.89968 -6.03641 1.53672 1.54952 1.56244 1.82901 1.91984 2.04462 2.40313 2.68519 3.18879 3.25060 3.40767 3.62639 3.71786 3.77941 3.84977 3.94926 4.10139 4.25702 4.27363 4.28829 4.31605 4.33978 4.36226 4.37680 4.44333 4.45359 4.57183 4.60669 4.64811 4.71254 4.73036 4.77182 4.85040 4.86460 4.89942 4.99132 5.00866 5.07849 5.14688 5.17894 5.19732 5.26444 5.31218 5.38095 5.41294 5.48787 5.62361 5.92593 6.00108 6.14736 6.47361 6.61211 6.78956 7.08669 7.48085 7.97539 8.57913 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.032492 B = 0.001623 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.540054 B =17250.452247 C =17453.573240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.100 4.100 4 C -0.101 4.101 5 H 0.111 0.889 6 C -0.138 4.138 7 C 0.525 3.475 8 O -0.589 6.589 9 N -0.619 5.619 10 C 0.099 3.901 11 C -0.112 4.112 12 C -0.088 4.088 13 H 0.081 0.919 14 C 0.068 3.932 15 N -0.528 5.528 16 C 0.025 3.975 17 C 0.057 3.943 18 C 0.446 3.554 19 O -0.607 6.607 20 N -0.590 5.590 21 C -0.407 4.407 22 H 0.073 0.927 23 C -0.043 4.043 24 N -0.919 5.919 25 Si 1.135 2.865 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.274 1.274 29 C 0.112 3.888 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.046 0.954 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.044 0.956 45 H 0.091 0.909 46 H 0.024 0.976 47 H 0.081 0.919 48 H 0.054 0.946 49 H 0.065 0.935 50 H 0.113 0.887 51 H 0.383 0.617 52 H 0.259 0.741 53 H 0.063 0.937 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.579 -13.415 -11.527 28.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.138 4.138 4 C -0.122 4.122 5 H 0.129 0.871 6 C -0.195 4.195 7 C 0.316 3.684 8 O -0.470 6.470 9 N -0.352 5.352 10 C -0.023 4.023 11 C -0.150 4.150 12 C -0.108 4.108 13 H 0.099 0.901 14 C -0.060 4.060 15 N -0.252 5.252 16 C -0.123 4.123 17 C -0.074 4.074 18 C 0.234 3.766 19 O -0.492 6.492 20 N -0.229 5.229 21 C -0.537 4.537 22 H 0.091 0.909 23 C -0.241 4.241 24 N -0.559 5.559 25 Si 0.955 3.045 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.199 1.199 29 C -0.012 4.012 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.111 0.889 39 H 0.066 0.934 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.062 0.938 45 H 0.109 0.891 46 H 0.043 0.957 47 H 0.099 0.901 48 H 0.073 0.927 49 H 0.083 0.917 50 H 0.131 0.869 51 H 0.217 0.783 52 H 0.070 0.930 53 H 0.081 0.919 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.592 -13.611 -10.487 27.594 hybrid contribution -1.522 1.355 -0.942 2.245 sum -23.114 -12.256 -11.429 28.550 Atomic orbital electron populations 1.21782 0.95750 1.02126 1.01572 1.21574 0.96021 0.94960 1.03159 1.21429 0.92395 0.98107 1.01853 1.21361 0.97468 0.91093 1.02309 0.87120 1.21769 1.01816 1.01875 0.94073 1.21062 0.79196 0.92416 0.75748 1.90669 1.56909 1.47943 1.51475 1.48651 1.17380 1.10299 1.58828 1.22295 0.90304 0.91229 0.98451 1.22555 0.96277 0.93572 1.02590 1.22243 0.94591 0.95986 0.97955 0.90111 1.22097 0.93453 0.97944 0.92484 1.61487 1.04213 1.55361 1.04172 1.22456 0.98755 0.97333 0.93749 1.21756 0.90876 0.97458 0.97284 1.20777 0.83104 0.83459 0.89248 1.90470 1.76901 1.40293 1.41541 1.42010 1.14471 1.42807 1.23638 1.20528 0.98855 1.29979 1.04289 0.90887 1.27766 0.98162 0.93699 1.04432 1.70945 1.38568 1.35186 1.11179 0.82598 0.73694 0.76714 0.71491 1.19740 1.20249 1.19867 1.22163 0.94710 0.85672 0.98619 0.93089 0.91637 0.93245 0.90469 0.90971 0.93163 0.92613 0.91388 0.88907 0.93440 0.90118 0.89156 0.89990 0.90046 0.93820 0.89105 0.95745 0.90081 0.92685 0.91706 0.86946 0.78261 0.92992 0.91884 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 71.98 0.71 -0.84 16 2 C -0.12 -1.15 5.69 30.59 0.17 -0.98 16 3 C -0.10 -1.48 4.14 30.60 0.13 -1.35 16 4 C -0.10 -1.40 2.29 -11.54 -0.03 -1.43 16 5 H 0.11 1.09 7.22 -2.39 -0.02 1.07 16 6 C -0.14 -1.47 9.02 71.98 0.65 -0.82 16 7 C 0.53 11.32 6.94 87.65 0.61 11.93 16 8 O -0.59 -17.86 16.44 -3.02 -0.05 -17.91 16 9 N -0.62 -11.47 3.33 -811.80 -2.70 -14.17 16 10 C 0.10 1.31 6.12 86.73 0.53 1.84 16 11 C -0.11 -1.86 6.37 31.78 0.20 -1.66 16 12 C -0.09 -1.64 2.99 -9.40 -0.03 -1.67 16 13 H 0.08 1.65 6.23 -2.38 -0.01 1.64 16 14 C 0.07 1.41 4.41 86.30 0.38 1.79 16 15 N -0.53 -15.47 4.45 -927.05 -4.12 -19.59 16 16 C 0.03 0.76 9.03 127.69 1.15 1.91 16 17 C 0.06 1.86 5.45 85.56 0.47 2.33 16 18 C 0.45 20.58 7.51 87.66 0.66 21.24 16 19 O -0.61 -32.63 13.89 -3.09 -0.04 -32.67 16 20 N -0.59 -29.46 5.28 -306.97 -1.62 -31.08 16 21 C -0.41 -23.02 9.68 84.04 0.81 -22.21 16 22 H 0.07 4.44 7.16 -2.91 -0.02 4.42 16 23 C -0.04 -2.29 5.50 84.93 0.47 -1.83 16 24 N -0.92 -50.96 13.68 21.66 0.30 -50.66 16 25 Si 1.13 48.28 29.92 68.60 2.05 50.33 16 26 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 27 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 28 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 29 C 0.11 2.13 6.40 86.86 0.56 2.69 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.08 0.58 6.48 -2.39 -0.02 0.57 16 34 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.06 1.02 8.03 -2.39 -0.02 1.00 16 37 H 0.07 0.63 7.69 -2.39 -0.02 0.61 16 38 H 0.09 0.61 6.38 -2.39 -0.02 0.60 16 39 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 40 H 0.08 0.91 7.92 -2.39 -0.02 0.89 16 41 H 0.09 0.86 7.68 -2.39 -0.02 0.85 16 42 H 0.08 1.33 7.91 -2.39 -0.02 1.31 16 43 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.04 0.86 8.12 -2.39 -0.02 0.84 16 45 H 0.09 1.66 7.76 -2.39 -0.02 1.64 16 46 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.08 2.09 6.18 -2.39 -0.01 2.08 16 48 H 0.05 2.15 5.88 -2.38 -0.01 2.13 16 49 H 0.07 1.90 8.12 -2.38 -0.02 1.88 16 50 H 0.11 3.11 7.93 -2.38 -0.02 3.09 16 51 H 0.38 17.60 6.73 -92.71 -0.62 16.98 16 52 H 0.26 13.88 6.77 -92.71 -0.63 13.25 16 53 H 0.06 1.39 7.99 -2.38 -0.02 1.37 16 54 H 0.08 1.35 8.03 -2.39 -0.02 1.33 16 Total: -1.00 -74.56 421.13 1.65 -72.91 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: 0.39 Total: 31.89 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 7.45 Total: 10.95 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -8.15 Total: -115.50 kcal Atomic # 8 Polarization: -50.49 SS G_CDS: -0.09 Total: -50.58 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 2.05 Total: 50.33 kcal Total: -74.56 1.65 -72.91 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664796478.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.396 kcal (2) G-P(sol) polarization free energy of solvation -74.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds