Wall clock time and date at job start Tue Mar 31 2020 22:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47358 * 2 1 4 4 C 1.53003 * 109.46982 * 119.99761 * 2 1 3 5 5 H 1.09005 * 109.47059 * 54.20770 * 4 2 1 6 6 C 1.53001 * 109.46868 * 294.21078 * 4 2 1 7 7 N 1.46503 * 109.46794 * 185.00106 * 6 4 2 8 8 C 1.34778 * 119.99910 * 179.97438 * 7 6 4 9 9 O 1.21278 * 119.99838 * 359.97438 * 8 7 6 10 10 C 1.50699 * 119.99988 * 179.97438 * 8 7 6 11 11 C 1.53009 * 109.46965 * 299.99767 * 10 8 7 12 12 C 1.52997 * 109.46722 * 179.97438 * 11 10 8 13 13 C 1.53007 * 109.47103 * 60.00607 * 12 11 10 14 14 C 1.52999 * 109.46857 * 299.99334 * 13 12 11 15 15 C 1.52998 * 109.47311 * 179.97438 * 10 8 7 16 16 N 1.46897 * 109.47267 * 174.20807 * 4 2 1 17 17 C 1.46904 * 110.99785 * 276.85116 * 16 4 2 18 18 C 1.50697 * 109.46933 * 176.14663 * 17 16 4 19 19 O 1.21288 * 120.00185 * 0.02562 * 18 17 16 20 20 N 1.34785 * 119.99945 * 179.97438 * 18 17 16 21 21 C 1.37096 * 119.99767 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00068 * 359.97438 * 21 20 18 23 23 C 1.38947 * 119.99622 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99979 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 120.00372 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46936 * 89.99893 * 25 23 21 27 27 H 1.48489 * 109.47445 * 210.00000 * 25 23 21 28 28 H 1.48505 * 109.46864 * 330.00397 * 25 23 21 29 29 H 1.09002 * 109.47224 * 305.56754 * 1 2 3 30 30 H 1.09001 * 109.46827 * 65.56223 * 1 2 3 31 31 H 1.09001 * 109.47549 * 185.55998 * 1 2 3 32 32 H 1.08997 * 109.47253 * 239.99608 * 2 1 3 33 33 H 1.08996 * 109.47513 * 179.97438 * 3 2 1 34 34 H 1.09006 * 109.46828 * 300.00045 * 3 2 1 35 35 H 1.08997 * 109.47258 * 59.99612 * 3 2 1 36 36 H 1.09000 * 109.46967 * 304.99645 * 6 4 2 37 37 H 1.08999 * 109.47643 * 64.99836 * 6 4 2 38 38 H 0.97001 * 120.00313 * 359.97438 * 7 6 4 39 39 H 1.08999 * 109.47087 * 59.99824 * 10 8 7 40 40 H 1.08999 * 109.47265 * 299.99948 * 11 10 8 41 41 H 1.09001 * 109.46632 * 60.00124 * 11 10 8 42 42 H 1.08999 * 109.47405 * 300.00103 * 12 11 10 43 43 H 1.09000 * 109.46825 * 180.02562 * 12 11 10 44 44 H 1.09000 * 109.46819 * 179.97438 * 13 12 11 45 45 H 1.08991 * 109.47099 * 59.99537 * 13 12 11 46 46 H 1.08999 * 109.47245 * 300.00256 * 14 13 12 47 47 H 1.08998 * 109.47248 * 179.97438 * 14 13 12 48 48 H 1.09000 * 109.46985 * 299.99966 * 15 10 8 49 49 H 1.09003 * 109.46820 * 59.99570 * 15 10 8 50 50 H 1.00892 * 110.99815 * 40.80361 * 16 4 2 51 51 H 1.08997 * 109.46997 * 296.15031 * 17 16 4 52 52 H 1.08997 * 109.47102 * 56.14695 * 17 16 4 53 53 H 0.96999 * 119.99816 * 0.02562 * 20 18 17 54 54 H 0.97004 * 120.00282 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5944 -1.7146 1.3027 6 6 1.6522 0.0792 2.4942 7 7 2.2417 -0.5467 3.6804 8 6 2.0335 -0.0103 4.8992 9 8 1.3585 0.9907 5.0139 10 6 2.6395 -0.6545 6.1194 11 6 2.1181 -2.0869 6.2520 12 6 2.7338 -2.7410 7.4904 13 6 2.3471 -1.9404 8.7356 14 6 2.8685 -0.5080 8.6031 15 6 2.2529 0.1467 7.3642 16 7 3.5023 -0.8435 1.1815 17 6 3.8965 -2.0065 0.3752 18 6 5.3977 -2.0451 0.2498 19 8 6.0729 -1.1885 0.7803 20 7 5.9903 -3.0322 -0.4510 21 6 7.3561 -3.0677 -0.5647 22 1 7.9572 -2.3044 -0.0930 23 6 7.9668 -4.0850 -1.2876 24 7 9.2759 -4.1187 -1.3970 25 14 6.9271 -5.4048 -2.1041 26 1 6.5747 -4.9757 -3.4813 27 1 7.6951 -6.6743 -2.1625 28 1 5.6849 -5.6134 -1.3175 29 1 -0.3634 0.5978 0.8359 30 1 -0.3633 0.4252 -0.9356 31 1 -0.3634 -1.0228 0.0996 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 2.0229 1.0999 2.3999 37 1 0.5668 0.0945 2.5930 38 1 2.7819 -1.3471 3.5886 39 1 3.7249 -0.6705 6.0207 40 1 1.0327 -2.0708 6.3507 41 1 2.3939 -2.6574 5.3651 42 1 3.8191 -2.7571 7.3913 43 1 2.3628 -3.7616 7.5846 44 1 2.7854 -2.4067 9.6180 45 1 1.2619 -1.9243 8.8347 46 1 3.9538 -0.5241 8.5039 47 1 2.5927 0.0625 9.4899 48 1 2.6246 1.1670 7.2695 49 1 1.1675 0.1632 7.4631 50 1 3.9196 0.0026 0.8240 51 1 3.5487 -2.9189 0.8594 52 1 3.4509 -1.9289 -0.6165 53 1 5.4503 -3.7175 -0.8750 54 1 9.7023 -4.8287 -1.9020 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667431352.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:35 Heat of formation + Delta-G solvation = -129.238584 kcal Electronic energy + Delta-G solvation = -30504.305066 eV Core-core repulsion = 26473.457263 eV Total energy + Delta-G solvation = -4030.847802 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.22466 -40.42180 -39.27977 -38.30390 -36.03827 -35.19050 -34.32503 -33.69944 -32.17484 -31.60376 -29.65927 -28.26539 -27.68550 -25.67720 -24.51709 -23.76428 -23.34501 -21.38813 -21.27957 -20.69159 -20.33586 -20.16290 -18.22058 -17.73246 -17.36068 -16.84046 -16.58758 -16.45652 -16.16674 -15.68573 -15.52101 -15.23457 -15.18410 -14.99136 -14.82359 -14.67068 -14.54199 -14.23353 -14.06322 -13.79304 -13.55284 -13.51031 -13.26819 -13.08032 -13.05586 -12.94868 -12.76404 -12.49321 -12.40074 -12.19619 -12.08183 -12.03054 -11.97103 -11.74484 -11.53320 -11.50360 -11.44781 -11.33995 -10.99208 -10.60602 -10.41725 -10.23568 -9.91808 -9.31606 -8.40057 -6.00948 1.31164 1.36683 1.45781 1.70673 1.98140 2.24185 2.32803 2.72913 3.16953 3.39200 3.67658 3.76282 3.77214 3.82040 3.90261 4.05753 4.18978 4.25429 4.28254 4.30112 4.36663 4.37514 4.44577 4.49068 4.57575 4.60132 4.61259 4.72496 4.73559 4.76227 4.80339 4.91616 4.97768 5.01288 5.05752 5.13572 5.18230 5.21359 5.25992 5.26758 5.34496 5.37191 5.40449 5.41178 5.54206 5.55789 5.61335 5.91836 6.04827 6.33650 6.60910 6.67223 6.89988 7.33615 7.41752 7.98600 8.77669 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009067 B = 0.002860 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3087.219668 B = 9789.366142 C =11924.183133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 C -0.155 4.155 4 C 0.086 3.914 5 H 0.106 0.894 6 C 0.131 3.869 7 N -0.706 5.706 8 C 0.511 3.489 9 O -0.591 6.591 10 C -0.105 4.105 11 C -0.104 4.104 12 C -0.118 4.118 13 C -0.119 4.119 14 C -0.118 4.118 15 C -0.095 4.095 16 N -0.676 5.676 17 C 0.061 3.939 18 C 0.449 3.551 19 O -0.615 6.615 20 N -0.590 5.590 21 C -0.327 4.327 22 H 0.054 0.946 23 C -0.016 4.016 24 N -0.936 5.936 25 Si 0.965 3.035 26 H -0.259 1.259 27 H -0.277 1.277 28 H -0.227 1.227 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.413 0.587 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.071 0.929 48 H 0.050 0.950 49 H 0.058 0.942 50 H 0.345 0.655 51 H 0.120 0.880 52 H 0.077 0.923 53 H 0.390 0.610 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.082 0.214 10.680 25.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.140 4.140 3 C -0.212 4.212 4 C -0.024 4.024 5 H 0.124 0.876 6 C 0.007 3.993 7 N -0.356 5.356 8 C 0.298 3.702 9 O -0.472 6.472 10 C -0.126 4.126 11 C -0.142 4.142 12 C -0.156 4.156 13 C -0.157 4.157 14 C -0.155 4.155 15 C -0.133 4.133 16 N -0.309 5.309 17 C -0.071 4.071 18 C 0.237 3.763 19 O -0.499 6.499 20 N -0.232 5.232 21 C -0.456 4.456 22 H 0.072 0.928 23 C -0.214 4.214 24 N -0.577 5.577 25 Si 0.785 3.215 26 H -0.183 1.183 27 H -0.203 1.203 28 H -0.151 1.151 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.249 0.751 39 H 0.117 0.883 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.089 0.911 48 H 0.069 0.931 49 H 0.077 0.923 50 H 0.165 0.835 51 H 0.138 0.862 52 H 0.095 0.905 53 H 0.225 0.775 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.851 1.060 11.619 25.658 hybrid contribution 0.591 -0.322 -1.667 1.798 sum -22.260 0.738 9.952 24.395 Atomic orbital electron populations 1.21812 0.93245 1.02645 1.02277 1.21721 0.97735 0.96449 0.98131 1.21953 1.00317 0.96491 1.02481 1.21939 0.87015 1.00258 0.93180 0.87599 1.21446 0.97708 0.96543 0.83643 1.45874 1.52852 1.31282 1.05627 1.21109 0.79832 0.83674 0.85578 1.90640 1.42028 1.27329 1.87209 1.21375 1.01711 0.97305 0.92178 1.21496 1.00650 0.92292 0.99723 1.21544 1.00970 0.99328 0.93719 1.21557 1.01150 0.94860 0.98106 1.21564 1.00484 0.96472 0.96990 1.21288 1.00825 0.98002 0.93154 1.60276 1.08020 1.06537 1.56025 1.21703 0.89670 0.96972 0.98790 1.21009 0.91497 0.82550 0.81265 1.90561 1.67163 1.41203 1.50981 1.42024 1.06087 1.26217 1.48893 1.18989 0.82098 1.11895 1.32639 0.92783 1.26123 0.97140 1.00484 0.97698 1.69810 1.10788 1.35092 1.42013 0.85370 0.79354 0.77298 0.79526 1.18341 1.20263 1.15053 0.92524 0.92058 0.91397 0.90464 0.93973 0.91612 0.92193 0.92882 0.90613 0.75062 0.88336 0.91652 0.90678 0.91719 0.90489 0.90885 0.91873 0.91771 0.91051 0.93071 0.92293 0.83451 0.86213 0.90511 0.77457 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.83 71.98 0.64 -1.19 16 2 C -0.12 -1.94 2.78 -10.79 -0.03 -1.97 16 3 C -0.16 -2.92 8.50 71.98 0.61 -2.30 16 4 C 0.09 1.55 1.95 44.92 0.09 1.64 16 5 H 0.11 1.52 7.88 -2.38 -0.02 1.50 16 6 C 0.13 2.75 4.67 86.38 0.40 3.15 16 7 N -0.71 -15.69 5.28 -463.05 -2.45 -18.14 16 8 C 0.51 13.03 7.15 87.66 0.63 13.66 16 9 O -0.59 -19.36 15.98 -3.02 -0.05 -19.41 16 10 C -0.10 -2.10 2.52 -11.54 -0.03 -2.13 16 11 C -0.10 -1.62 5.10 30.60 0.16 -1.46 16 12 C -0.12 -1.59 5.92 30.60 0.18 -1.41 16 13 C -0.12 -1.56 5.92 30.60 0.18 -1.38 16 14 C -0.12 -1.80 5.92 30.61 0.18 -1.62 16 15 C -0.09 -1.90 4.50 30.61 0.14 -1.77 16 16 N -0.68 -17.16 5.38 -495.57 -2.67 -19.82 16 17 C 0.06 1.60 5.97 85.56 0.51 2.11 16 18 C 0.45 18.90 7.81 87.65 0.68 19.58 16 19 O -0.61 -32.56 15.69 -3.05 -0.05 -32.61 16 20 N -0.59 -26.42 5.09 -306.98 -1.56 -27.99 16 21 C -0.33 -18.66 10.16 84.04 0.85 -17.81 16 22 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 23 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 24 N -0.94 -55.79 13.96 21.66 0.30 -55.49 16 25 Si 0.96 37.50 27.74 68.60 1.90 39.41 16 26 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 27 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 28 H -0.23 -7.25 6.52 99.48 0.65 -6.60 16 29 H 0.06 0.77 6.98 -2.39 -0.02 0.75 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 1.27 7.17 -2.39 -0.02 1.25 16 33 H 0.04 0.94 6.47 -2.39 -0.02 0.93 16 34 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.06 1.16 6.23 -2.39 -0.01 1.14 16 36 H 0.05 1.33 6.05 -2.39 -0.01 1.31 16 37 H 0.08 1.51 6.97 -2.39 -0.02 1.49 16 38 H 0.41 8.49 7.56 -92.71 -0.70 7.79 16 39 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.07 1.07 7.56 -2.39 -0.02 1.05 16 42 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 49 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 50 H 0.34 10.32 6.19 -89.70 -0.55 9.77 16 51 H 0.12 2.48 8.13 -2.39 -0.02 2.46 16 52 H 0.08 1.64 7.16 -2.39 -0.02 1.63 16 53 H 0.39 14.23 5.76 -92.71 -0.53 13.69 16 54 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -77.04 414.62 0.16 -76.88 By element: Atomic # 1 Polarization: 51.39 SS G_CDS: -0.94 Total: 50.45 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 5.66 Total: 6.71 kcal Atomic # 7 Polarization: -115.06 SS G_CDS: -6.37 Total: -121.44 kcal Atomic # 8 Polarization: -51.92 SS G_CDS: -0.10 Total: -52.02 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 1.90 Total: 39.41 kcal Total: -77.04 0.16 -76.88 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667431352.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.357 kcal (2) G-P(sol) polarization free energy of solvation -77.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds