Wall clock time and date at job start Tue Mar 31 2020 22:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46791 * 2 1 4 4 C 1.52995 * 109.47331 * 120.00056 * 2 1 3 5 5 H 1.09003 * 109.47112 * 185.00072 * 4 2 1 6 6 C 1.53000 * 109.47134 * 304.99899 * 4 2 1 7 7 N 1.46504 * 109.47130 * 174.99718 * 6 4 2 8 8 C 1.34773 * 120.00014 * 179.97438 * 7 6 4 9 9 O 1.21275 * 119.99987 * 0.02562 * 8 7 6 10 10 C 1.50708 * 119.99980 * 180.02562 * 8 7 6 11 11 C 1.52998 * 109.47021 * 300.00305 * 10 8 7 12 12 C 1.52995 * 109.47252 * 179.97438 * 11 10 8 13 13 C 1.53007 * 109.47100 * 59.99944 * 12 11 10 14 14 C 1.53003 * 109.46796 * 300.00255 * 13 12 11 15 15 C 1.52992 * 109.47080 * 180.02562 * 10 8 7 16 16 N 1.46906 * 109.46946 * 64.99993 * 4 2 1 17 17 C 1.46901 * 110.99793 * 85.00144 * 16 4 2 18 18 C 1.50701 * 109.46921 * 179.97438 * 17 16 4 19 19 O 1.21294 * 119.99849 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99795 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99707 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99704 * 359.97438 * 21 20 18 23 23 C 1.38941 * 119.99927 * 180.02562 * 21 20 18 24 24 N 1.31417 * 120.00180 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00273 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47117 * 59.99412 * 25 23 21 27 27 H 1.48498 * 109.47600 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46756 * 300.00019 * 25 23 21 29 29 H 1.09008 * 109.47174 * 299.99543 * 1 2 3 30 30 H 1.08998 * 109.47656 * 59.99726 * 1 2 3 31 31 H 1.09001 * 109.47252 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47087 * 240.00370 * 2 1 3 33 33 H 1.09005 * 109.46921 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47712 * 299.99917 * 3 2 1 35 35 H 1.09003 * 109.47472 * 60.00678 * 3 2 1 36 36 H 1.08994 * 109.47382 * 295.00083 * 6 4 2 37 37 H 1.09004 * 109.46882 * 55.00487 * 6 4 2 38 38 H 0.97001 * 119.99619 * 0.02562 * 7 6 4 39 39 H 1.08996 * 109.46762 * 59.99898 * 10 8 7 40 40 H 1.09000 * 109.47367 * 300.00299 * 11 10 8 41 41 H 1.09008 * 109.47490 * 59.99485 * 11 10 8 42 42 H 1.09003 * 109.47390 * 299.99946 * 12 11 10 43 43 H 1.08998 * 109.47714 * 179.97438 * 12 11 10 44 44 H 1.08995 * 109.47051 * 180.02562 * 13 12 11 45 45 H 1.09000 * 109.46615 * 60.00124 * 13 12 11 46 46 H 1.09003 * 109.46944 * 299.99539 * 14 13 12 47 47 H 1.09000 * 109.46651 * 179.97438 * 14 13 12 48 48 H 1.09006 * 109.47230 * 299.99568 * 15 10 8 49 49 H 1.08993 * 109.47539 * 59.99606 * 15 10 8 50 50 H 1.00898 * 110.99995 * 208.95221 * 16 4 2 51 51 H 1.09002 * 109.47401 * 59.99808 * 17 16 4 52 52 H 1.09001 * 109.46874 * 299.99821 * 17 16 4 53 53 H 0.96995 * 120.00011 * 0.02562 * 20 18 17 54 54 H 0.97000 * 119.99884 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1263 -0.6443 1.2951 6 6 1.4300 -0.0762 2.4953 7 7 1.8228 -0.8397 3.6824 8 6 1.3996 -0.4537 4.9023 9 8 0.6934 0.5255 5.0174 10 6 1.8041 -1.2387 6.1235 11 6 1.2993 -2.6773 5.9952 12 6 1.7105 -3.4745 7.2347 13 6 1.1013 -2.8295 8.4812 14 6 1.6062 -1.3908 8.6094 15 6 1.1941 -0.5938 7.3695 16 7 1.6514 -2.1367 1.1903 17 6 2.6261 -2.9185 0.4178 18 6 2.1952 -4.3621 0.3800 19 8 1.1762 -4.7058 0.9410 20 7 2.9417 -5.2712 -0.2780 21 6 2.5495 -6.5844 -0.3128 22 1 1.6425 -6.8905 0.1874 23 6 3.3193 -7.5216 -0.9907 24 7 4.4231 -7.1492 -1.5988 25 14 2.7845 -9.3108 -1.0388 26 1 1.4493 -9.4112 -1.6808 27 1 3.7696 -10.1011 -1.8200 28 1 2.7092 -9.8422 0.3458 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 1.7896 0.9486 2.5870 37 1 0.3434 -0.0737 2.4081 38 1 2.3880 -1.6227 3.5903 39 1 2.8907 -1.2414 6.2102 40 1 0.2128 -2.6748 5.9084 41 1 1.7336 -3.1371 5.1074 42 1 2.7971 -3.4772 7.3211 43 1 1.3505 -4.4993 7.1436 44 1 1.3946 -3.3972 9.3642 45 1 0.0148 -2.8270 8.3948 46 1 2.6928 -1.3935 8.6958 47 1 1.1719 -0.9312 9.4972 48 1 1.5534 0.4312 7.4611 49 1 0.1076 -0.5915 7.2825 50 1 1.5346 -2.5185 2.1170 51 1 3.6063 -2.8445 0.8888 52 1 2.6809 -2.5286 -0.5986 53 1 3.7564 -4.9963 -0.7268 54 1 4.9603 -7.8035 -2.0724 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667431356.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:39 Heat of formation + Delta-G solvation = -129.405872 kcal Electronic energy + Delta-G solvation = -30628.813353 eV Core-core repulsion = 26597.958297 eV Total energy + Delta-G solvation = -4030.855056 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.37507 -40.26853 -39.21514 -38.31706 -35.99793 -35.31520 -34.47523 -33.22216 -32.22583 -31.63617 -29.66603 -28.01919 -27.65378 -25.82148 -24.76733 -23.84565 -23.39675 -21.55444 -21.09408 -20.67809 -20.01830 -19.87955 -18.44302 -17.76395 -17.30481 -16.82502 -16.79135 -16.36015 -16.14542 -15.89929 -15.57294 -15.31086 -15.19999 -15.01854 -14.82033 -14.77799 -14.54070 -14.10046 -13.90120 -13.59131 -13.53949 -13.35479 -13.25450 -13.09767 -13.08639 -12.89107 -12.69015 -12.58002 -12.41827 -12.25176 -12.12598 -12.06385 -11.87665 -11.76291 -11.57032 -11.48725 -11.37530 -11.32550 -11.02521 -10.68325 -10.31693 -10.12030 -9.99804 -9.33191 -8.45496 -5.93790 1.40121 1.42561 1.52781 1.58016 2.07035 2.13848 2.29540 2.86429 3.22282 3.46655 3.56080 3.65605 3.73373 3.77001 4.02596 4.11396 4.22309 4.26194 4.29028 4.29967 4.37852 4.38649 4.44478 4.49047 4.53694 4.57386 4.59748 4.63965 4.68928 4.73122 4.87072 4.94211 4.97354 5.09965 5.10798 5.14279 5.15762 5.22927 5.23828 5.26766 5.34039 5.36598 5.39014 5.42102 5.52207 5.54710 5.55611 5.88921 6.09594 6.36196 6.41464 6.61686 7.14305 7.16280 7.58366 8.13671 8.71559 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.008243 B = 0.003063 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3396.064631 B = 9138.963059 C =12011.560940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.081 4.081 3 C -0.145 4.145 4 C 0.088 3.912 5 H 0.067 0.933 6 C 0.118 3.882 7 N -0.724 5.724 8 C 0.516 3.484 9 O -0.580 6.580 10 C -0.099 4.099 11 C -0.110 4.110 12 C -0.117 4.117 13 C -0.121 4.121 14 C -0.114 4.114 15 C -0.096 4.096 16 N -0.673 5.673 17 C 0.064 3.936 18 C 0.439 3.561 19 O -0.621 6.621 20 N -0.572 5.572 21 C -0.332 4.332 22 H 0.078 0.922 23 C -0.011 4.011 24 N -0.920 5.920 25 Si 0.989 3.011 26 H -0.274 1.274 27 H -0.271 1.271 28 H -0.271 1.271 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.405 0.595 39 H 0.118 0.882 40 H 0.053 0.947 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.054 0.946 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.062 0.938 49 H 0.050 0.950 50 H 0.343 0.657 51 H 0.072 0.928 52 H 0.103 0.897 53 H 0.396 0.604 54 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.352 14.879 13.261 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.100 4.100 3 C -0.203 4.203 4 C -0.022 4.022 5 H 0.085 0.915 6 C -0.005 4.005 7 N -0.377 5.377 8 C 0.304 3.696 9 O -0.459 6.459 10 C -0.120 4.120 11 C -0.148 4.148 12 C -0.154 4.154 13 C -0.159 4.159 14 C -0.151 4.151 15 C -0.134 4.134 16 N -0.308 5.308 17 C -0.068 4.068 18 C 0.226 3.774 19 O -0.508 6.508 20 N -0.210 5.210 21 C -0.462 4.462 22 H 0.096 0.904 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.813 3.187 26 H -0.199 1.199 27 H -0.196 1.196 28 H -0.196 1.196 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.241 0.759 39 H 0.135 0.865 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.073 0.927 46 H 0.093 0.907 47 H 0.091 0.909 48 H 0.081 0.919 49 H 0.069 0.931 50 H 0.164 0.836 51 H 0.089 0.911 52 H 0.121 0.879 53 H 0.230 0.770 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.104 15.325 13.058 20.134 hybrid contribution 0.909 -1.297 -0.142 1.590 sum 0.804 14.029 12.916 19.086 Atomic orbital electron populations 1.21768 0.95345 1.01410 1.01235 1.21039 0.96230 0.96146 0.96600 1.21876 1.01418 0.94564 1.02444 1.21856 0.98456 0.87233 0.94634 0.91487 1.21663 1.00409 0.95627 0.82814 1.46093 1.53158 1.31980 1.06448 1.21166 0.78813 0.84343 0.85288 1.90662 1.38980 1.29271 1.87020 1.21387 1.03355 0.95297 0.91994 1.21516 1.00869 0.92845 0.99594 1.21526 1.01597 0.98702 0.93590 1.21576 1.00248 0.96062 0.98008 1.21546 1.01755 0.94973 0.96829 1.21313 1.00178 0.98886 0.93024 1.60035 1.48149 1.01409 1.21214 1.21610 0.94357 0.89581 1.01234 1.20843 0.85236 0.88553 0.82727 1.90506 1.27933 1.81910 1.50413 1.41913 1.24063 1.07367 1.47625 1.19606 1.08937 0.84660 1.33005 0.90368 1.25980 0.95431 1.04024 0.95661 1.69661 1.14770 1.37075 1.34583 0.85043 0.78010 0.77060 0.78581 1.19947 1.19589 1.19573 0.92849 0.92475 0.93700 0.91173 0.91777 0.91721 0.92347 0.89953 0.91677 0.75860 0.86460 0.92850 0.91520 0.90554 0.91704 0.90654 0.92696 0.90706 0.90933 0.91931 0.93095 0.83633 0.91065 0.87942 0.76997 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.60 71.98 0.62 -2.64 16 2 C -0.08 -1.66 2.82 -10.80 -0.03 -1.69 16 3 C -0.15 -2.31 8.95 71.98 0.64 -1.66 16 4 C 0.09 1.88 1.97 44.91 0.09 1.97 16 5 H 0.07 1.24 7.80 -2.39 -0.02 1.22 16 6 C 0.12 2.62 4.61 86.38 0.40 3.02 16 7 N -0.72 -15.58 4.88 -463.06 -2.26 -17.84 16 8 C 0.52 12.53 7.15 87.66 0.63 13.16 16 9 O -0.58 -18.36 15.98 -3.01 -0.05 -18.40 16 10 C -0.10 -1.84 2.53 -11.54 -0.03 -1.87 16 11 C -0.11 -2.10 5.10 30.59 0.16 -1.94 16 12 C -0.12 -1.85 5.92 30.59 0.18 -1.67 16 13 C -0.12 -1.74 5.92 30.60 0.18 -1.56 16 14 C -0.11 -1.56 5.93 30.61 0.18 -1.38 16 15 C -0.10 -1.78 4.49 30.61 0.14 -1.64 16 16 N -0.67 -19.35 5.38 -495.56 -2.67 -22.02 16 17 C 0.06 2.02 5.96 85.56 0.51 2.53 16 18 C 0.44 19.85 7.82 87.66 0.69 20.54 16 19 O -0.62 -33.13 15.78 -3.07 -0.05 -33.18 16 20 N -0.57 -28.29 5.29 -306.98 -1.62 -29.92 16 21 C -0.33 -18.44 9.68 84.04 0.81 -17.63 16 22 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 23 C -0.01 -0.58 5.50 84.92 0.47 -0.12 16 24 N -0.92 -48.66 13.05 21.66 0.28 -48.37 16 25 Si 0.99 42.22 29.55 68.60 2.03 44.25 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 27 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 28 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 29 H 0.05 1.20 6.23 -2.38 -0.01 1.19 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.04 1.30 7.75 -2.39 -0.02 1.28 16 32 H 0.07 1.56 7.35 -2.39 -0.02 1.54 16 33 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.06 0.91 6.68 -2.39 -0.02 0.90 16 36 H 0.08 1.72 6.81 -2.39 -0.02 1.70 16 37 H 0.07 1.71 6.06 -2.39 -0.01 1.70 16 38 H 0.41 7.67 6.79 -92.71 -0.63 7.04 16 39 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.07 1.31 7.57 -2.38 -0.02 1.29 16 42 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.06 1.22 8.10 -2.38 -0.02 1.20 16 49 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 50 H 0.34 10.36 6.41 -89.70 -0.58 9.78 16 51 H 0.07 1.87 8.06 -2.39 -0.02 1.85 16 52 H 0.10 2.96 7.36 -2.39 -0.02 2.95 16 53 H 0.40 18.57 7.90 -92.71 -0.73 17.84 16 54 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 Total: -1.00 -68.60 418.20 0.27 -68.33 By element: Atomic # 1 Polarization: 50.76 SS G_CDS: -1.03 Total: 49.73 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 5.63 Total: 7.42 kcal Atomic # 7 Polarization: -111.88 SS G_CDS: -6.27 Total: -118.14 kcal Atomic # 8 Polarization: -51.48 SS G_CDS: -0.10 Total: -51.58 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -68.60 0.27 -68.33 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667431356.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.072 kcal (2) G-P(sol) polarization free energy of solvation -68.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds