Wall clock time and date at job start Tue Mar 31 2020 22:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21279 * 120.00182 * 2 1 4 4 N 1.34772 * 120.00057 * 180.02562 * 2 1 3 5 5 C 1.46500 * 120.00545 * 175.00173 * 4 2 1 6 6 C 1.50707 * 109.46926 * 304.81473 * 5 4 2 7 7 O 1.21274 * 120.00003 * 144.16441 * 6 5 4 8 8 N 1.34781 * 119.99325 * 324.16257 * 6 5 4 9 9 C 1.46498 * 119.99282 * 174.98034 * 8 6 5 10 10 C 1.52999 * 109.46947 * 179.97438 * 9 8 6 11 11 H 1.09003 * 109.46971 * 64.99732 * 10 9 8 12 12 N 1.46493 * 109.47108 * 304.99741 * 10 9 8 13 13 C 1.36938 * 120.00329 * 155.00214 * 12 10 9 14 14 H 1.08007 * 119.99669 * 359.97438 * 13 12 10 15 15 C 1.38819 * 120.00366 * 180.02562 * 13 12 10 16 16 N 1.31613 * 119.99375 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00033 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47043 * 89.99471 * 17 15 13 19 19 H 1.48494 * 109.47097 * 209.99945 * 17 15 13 20 20 H 1.48502 * 109.47269 * 329.99871 * 17 15 13 21 21 C 1.53002 * 109.47338 * 184.99769 * 10 9 8 22 22 C 1.52999 * 109.47338 * 179.97438 * 21 10 9 23 23 C 1.53002 * 109.47082 * 299.99910 * 21 10 9 24 24 C 1.53000 * 109.47130 * 64.80718 * 5 4 2 25 25 C 1.53008 * 109.46721 * 60.00480 * 24 5 4 26 26 C 1.52997 * 109.47141 * 60.00167 * 25 24 5 27 27 C 1.53003 * 109.47007 * 299.99881 * 26 25 24 28 28 C 1.52997 * 109.47637 * 184.81105 * 5 4 2 29 29 H 1.08997 * 109.46987 * 239.99563 * 1 2 3 30 30 H 1.09004 * 109.47485 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.47486 * 120.00012 * 1 2 3 32 32 H 0.97003 * 120.00019 * 354.99695 * 4 2 1 33 33 H 0.96998 * 120.00704 * 354.97553 * 8 6 5 34 34 H 1.08997 * 109.47526 * 59.99683 * 9 8 6 35 35 H 1.09005 * 109.47205 * 299.99799 * 9 8 6 36 36 H 0.96999 * 120.00003 * 334.99802 * 12 10 9 37 37 H 0.97007 * 119.99518 * 179.97438 * 16 15 13 38 38 H 1.08994 * 109.47285 * 59.99447 * 21 10 9 39 39 H 1.09003 * 109.46971 * 59.99963 * 22 21 10 40 40 H 1.08999 * 109.47396 * 179.97438 * 22 21 10 41 41 H 1.09001 * 109.47206 * 300.00116 * 22 21 10 42 42 H 1.09004 * 109.46905 * 59.99668 * 23 21 10 43 43 H 1.08999 * 109.47706 * 179.97438 * 23 21 10 44 44 H 1.09003 * 109.47261 * 300.00057 * 23 21 10 45 45 H 1.08998 * 109.47242 * 180.02562 * 24 5 4 46 46 H 1.08997 * 109.47293 * 300.00858 * 24 5 4 47 47 H 1.08998 * 109.47094 * 299.99884 * 25 24 5 48 48 H 1.09000 * 109.46859 * 180.02562 * 25 24 5 49 49 H 1.09000 * 109.47207 * 180.02562 * 26 25 24 50 50 H 1.08998 * 109.47358 * 59.99879 * 26 25 24 51 51 H 1.08998 * 109.47060 * 300.00180 * 27 26 25 52 52 H 1.09000 * 109.46876 * 180.02562 * 27 26 25 53 53 H 1.09000 * 109.47138 * 59.99786 * 28 5 4 54 54 H 1.08998 * 109.47358 * 179.97438 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6416 -1.1696 -0.1111 6 6 4.0532 -0.4103 -1.3461 7 8 5.0628 0.2615 -1.3365 8 7 3.2992 -0.4780 -2.4612 9 6 3.6375 0.3449 -3.6251 10 6 2.6315 0.0795 -4.7469 11 1 1.6424 0.4144 -4.4346 12 7 2.5920 -1.3557 -5.0379 13 6 1.4707 -1.9108 -5.5945 14 1 0.6153 -1.2906 -5.8185 15 6 1.4330 -3.2709 -5.8697 16 7 2.4752 -4.0267 -5.5962 17 14 -0.0969 -4.0283 -6.6283 18 1 0.0109 -3.9841 -8.1087 19 1 -0.2236 -5.4392 -6.1829 20 1 -1.2942 -3.2634 -6.1962 21 6 3.0554 0.8431 -6.0032 22 6 2.0498 0.5772 -7.1253 23 6 3.0967 2.3421 -5.6993 24 6 4.2477 -0.5008 1.1243 25 6 3.8298 -1.2717 2.3782 26 6 4.3316 -2.7137 2.2812 27 6 3.7256 -3.3826 1.0457 28 6 4.1434 -2.6117 -0.2081 29 1 -0.3633 -0.5139 0.8899 30 1 -0.3634 1.0277 0.0005 31 1 -0.3634 -0.5138 -0.8900 32 1 1.6986 -2.0057 0.0724 33 1 2.5327 -1.0715 -2.4931 34 1 4.6403 0.0924 -3.9695 35 1 3.6032 1.3984 -3.3475 36 1 3.3600 -1.9128 -4.8364 37 1 2.4487 -4.9772 -5.7882 38 1 4.0446 0.5084 -6.3154 39 1 1.0604 0.9118 -6.8132 40 1 2.3515 1.1216 -8.0201 41 1 2.0208 -0.4907 -7.3417 42 1 3.8134 2.5311 -4.9000 43 1 3.3991 2.8861 -6.5941 44 1 2.1075 2.6769 -5.3870 45 1 5.3346 -0.5022 1.0419 46 1 3.8902 0.5266 1.1935 47 1 2.7430 -1.2699 2.4605 48 1 4.2612 -0.7949 3.2584 49 1 4.0336 -3.2630 3.1743 50 1 5.4185 -2.7155 2.1990 51 1 2.6387 -3.3808 1.1280 52 1 4.0827 -4.4101 0.9769 53 1 3.7117 -3.0882 -1.0882 54 1 5.2303 -2.6135 -0.2908 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667474236.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:50 Heat of formation + Delta-G solvation = -110.379212 kcal Electronic energy + Delta-G solvation = -32617.036795 eV Core-core repulsion = 28587.006796 eV Total energy + Delta-G solvation = -4030.029998 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.16702 -39.98323 -39.03374 -38.36579 -35.46311 -34.94528 -34.64921 -32.25258 -31.85664 -31.81356 -29.66690 -29.36470 -27.51469 -25.85301 -24.54289 -23.71613 -23.13134 -22.12009 -21.47678 -20.80095 -20.07584 -19.23230 -18.36369 -18.08603 -17.34971 -16.89788 -16.60760 -16.18022 -15.92395 -15.78984 -15.54321 -15.18005 -15.04894 -14.98676 -14.84103 -14.64331 -14.41220 -13.83054 -13.74417 -13.60422 -13.46058 -13.33014 -13.21498 -13.01472 -12.93386 -12.90024 -12.82714 -12.72212 -12.50155 -12.28886 -12.12849 -11.97810 -11.83007 -11.72707 -11.50908 -11.47934 -11.30596 -11.27216 -10.99131 -10.82541 -10.69537 -10.03248 -10.00442 -8.95528 -7.85016 -5.12818 1.50891 1.51505 1.54504 1.60438 1.68982 2.15240 2.33274 2.61371 3.46841 3.56854 3.61946 3.74893 3.83868 3.90029 3.94608 4.12991 4.20449 4.24445 4.26361 4.28166 4.39821 4.45440 4.48338 4.55439 4.60373 4.65152 4.69836 4.72903 4.75980 4.88947 4.94335 4.99569 5.03343 5.09949 5.10805 5.12935 5.15319 5.19707 5.22333 5.27626 5.30151 5.35140 5.41362 5.49851 5.53874 5.60215 5.63603 5.74398 6.33709 6.51024 6.62294 7.21995 7.28221 7.42219 8.10793 8.38931 9.37559 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010333 B = 0.004178 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.241040 B = 6699.703054 C = 7821.551186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.504 3.496 3 O -0.580 6.580 4 N -0.708 5.708 5 C 0.175 3.825 6 C 0.511 3.489 7 O -0.587 6.587 8 N -0.703 5.703 9 C 0.124 3.876 10 C 0.178 3.822 11 H 0.052 0.948 12 N -0.724 5.724 13 C -0.216 4.216 14 H 0.078 0.922 15 C -0.066 4.066 16 N -0.965 5.965 17 Si 0.958 3.042 18 H -0.298 1.298 19 H -0.300 1.300 20 H -0.268 1.268 21 C -0.106 4.106 22 C -0.132 4.132 23 C -0.140 4.140 24 C -0.108 4.108 25 C -0.106 4.106 26 C -0.117 4.117 27 C -0.110 4.110 28 C -0.118 4.118 29 H 0.119 0.881 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.419 0.581 33 H 0.408 0.592 34 H 0.045 0.955 35 H 0.065 0.935 36 H 0.372 0.628 37 H 0.247 0.753 38 H 0.050 0.950 39 H 0.047 0.953 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.053 0.947 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.085 0.915 50 H 0.059 0.941 51 H 0.081 0.919 52 H 0.083 0.917 53 H 0.071 0.929 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.479 3.088 15.077 15.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.294 3.706 3 O -0.459 6.459 4 N -0.365 5.365 5 C 0.085 3.915 6 C 0.297 3.703 7 O -0.467 6.467 8 N -0.353 5.353 9 C -0.001 4.001 10 C 0.069 3.931 11 H 0.070 0.930 12 N -0.364 5.364 13 C -0.348 4.348 14 H 0.096 0.904 15 C -0.258 4.258 16 N -0.616 5.616 17 Si 0.789 3.211 18 H -0.226 1.226 19 H -0.227 1.227 20 H -0.193 1.193 21 C -0.128 4.128 22 C -0.190 4.190 23 C -0.198 4.198 24 C -0.147 4.147 25 C -0.144 4.144 26 C -0.155 4.155 27 C -0.147 4.147 28 C -0.156 4.156 29 H 0.137 0.863 30 H 0.106 0.894 31 H 0.120 0.880 32 H 0.259 0.741 33 H 0.244 0.756 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.204 0.796 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.088 0.912 49 H 0.104 0.896 50 H 0.078 0.922 51 H 0.099 0.901 52 H 0.101 0.899 53 H 0.090 0.910 54 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.565 4.307 14.990 15.806 hybrid contribution -0.522 -1.184 -0.982 1.624 sum -3.087 3.123 14.008 14.680 Atomic orbital electron populations 1.21941 0.88213 1.06013 1.06428 1.21611 0.92211 0.82870 0.73953 1.90734 1.71717 1.32993 1.50479 1.46096 1.05319 1.09959 1.75139 1.20360 0.82156 0.97045 0.91938 1.21290 0.82818 0.80828 0.85329 1.90609 1.27526 1.43639 1.84930 1.45833 1.31974 1.44192 1.13283 1.21547 0.98390 0.94397 0.85765 1.20579 0.95999 0.84974 0.91519 0.92990 1.42521 1.16530 1.02986 1.74350 1.19435 0.93498 0.91070 1.30761 0.90447 1.25308 0.99671 0.97083 1.03763 1.69808 1.30984 1.05027 1.55747 0.85370 0.80596 0.77408 0.77738 1.22627 1.22736 1.19322 1.21626 0.98922 0.95492 0.96759 1.21714 0.98098 1.01937 0.97204 1.21844 1.01749 0.94705 1.01530 1.21646 1.00147 0.99450 0.93483 1.21460 1.01521 0.95746 0.95641 1.21572 1.00560 0.94874 0.98450 1.21524 1.01854 0.99154 0.92172 1.21789 1.01974 0.90808 1.01031 0.86268 0.89408 0.87976 0.74145 0.75575 0.93637 0.91679 0.79614 0.94388 0.93194 0.93408 0.92987 0.92933 0.93079 0.91806 0.92374 0.92002 0.92810 0.91207 0.91161 0.89598 0.92189 0.90067 0.89857 0.90981 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 10.32 71.23 0.74 -1.92 16 2 C 0.50 12.60 7.08 87.66 0.62 13.22 16 3 O -0.58 -20.41 14.37 -3.03 -0.04 -20.45 16 4 N -0.71 -15.31 3.46 -426.33 -1.48 -16.79 16 5 C 0.18 4.77 0.58 2.86 0.00 4.77 16 6 C 0.51 18.85 5.18 87.66 0.45 19.31 16 7 O -0.59 -26.04 16.09 -3.01 -0.05 -26.09 16 8 N -0.70 -25.38 4.95 -463.05 -2.29 -27.67 16 9 C 0.12 4.63 4.73 86.38 0.41 5.04 16 10 C 0.18 6.70 2.18 44.99 0.10 6.79 16 11 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 12 N -0.72 -32.61 4.44 -322.94 -1.43 -34.04 16 13 C -0.22 -10.54 7.57 84.04 0.64 -9.90 16 14 H 0.08 3.66 7.40 -2.91 -0.02 3.64 16 15 C -0.07 -3.42 5.50 84.86 0.47 -2.95 16 16 N -0.96 -54.41 13.06 21.65 0.28 -54.12 16 17 Si 0.96 42.72 29.55 68.60 2.03 44.75 16 18 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 19 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 20 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 21 C -0.11 -3.66 2.69 -10.79 -0.03 -3.69 16 22 C -0.13 -4.62 8.26 71.98 0.59 -4.03 16 23 C -0.14 -3.97 8.84 71.98 0.64 -3.34 16 24 C -0.11 -2.96 4.11 30.60 0.13 -2.83 16 25 C -0.11 -1.97 5.77 30.60 0.18 -1.79 16 26 C -0.12 -1.76 5.92 30.59 0.18 -1.58 16 27 C -0.11 -1.71 5.75 30.59 0.18 -1.54 16 28 C -0.12 -2.75 4.78 30.59 0.15 -2.60 16 29 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.09 1.50 8.12 -2.39 -0.02 1.48 16 31 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.42 6.39 7.17 -92.71 -0.67 5.73 16 33 H 0.41 14.41 7.62 -92.71 -0.71 13.71 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.07 2.43 6.71 -2.38 -0.02 2.42 16 36 H 0.37 18.74 7.80 -92.71 -0.72 18.01 16 37 H 0.25 13.79 8.31 -92.70 -0.77 13.02 16 38 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.05 2.20 6.01 -2.39 -0.01 2.19 16 42 H 0.05 1.45 6.54 -2.38 -0.02 1.44 16 43 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.06 1.85 7.87 -2.39 -0.02 1.83 16 46 H 0.05 1.80 6.36 -2.39 -0.02 1.79 16 47 H 0.07 1.18 7.60 -2.39 -0.02 1.16 16 48 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.08 1.00 6.77 -2.39 -0.02 0.98 16 52 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 53 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 54 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -69.36 412.87 1.25 -68.11 By element: Atomic # 1 Polarization: 54.55 SS G_CDS: -1.19 Total: 53.36 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 5.43 Total: 12.96 kcal Atomic # 7 Polarization: -127.70 SS G_CDS: -4.92 Total: -132.62 kcal Atomic # 8 Polarization: -46.45 SS G_CDS: -0.09 Total: -46.54 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -69.36 1.25 -68.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667474236.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.273 kcal (2) G-P(sol) polarization free energy of solvation -69.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds