Wall clock time and date at job start Tue Mar 31 2020 22:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 6 6 O 1.21280 * 120.00255 * 0.02562 * 5 2 1 7 7 N 1.34779 * 120.00378 * 180.02562 * 5 2 1 8 8 C 1.46497 * 120.00488 * 179.97438 * 7 5 2 9 9 H 1.09004 * 109.46997 * 35.00726 * 8 7 5 10 10 C 1.52993 * 109.47620 * 275.00190 * 8 7 5 11 11 C 1.53000 * 109.47117 * 300.00279 * 10 8 7 12 12 C 1.53002 * 109.46719 * 299.99435 * 11 10 8 13 13 C 1.53004 * 109.47105 * 60.00200 * 12 11 10 14 14 C 1.52995 * 109.47017 * 300.00159 * 13 12 11 15 15 H 1.09001 * 109.46855 * 299.99426 * 14 13 12 16 16 C 1.53004 * 109.47017 * 180.02562 * 14 13 12 17 17 N 1.46897 * 109.47034 * 65.00085 * 16 14 13 18 18 C 1.46904 * 110.99764 * 180.02562 * 17 16 14 19 19 C 1.50703 * 109.46877 * 179.97438 * 18 17 16 20 20 O 1.21288 * 120.00181 * 359.97438 * 19 18 17 21 21 N 1.34778 * 119.99794 * 179.97438 * 19 18 17 22 22 C 1.37092 * 119.99998 * 179.97438 * 21 19 18 23 23 H 1.08000 * 120.00006 * 0.02562 * 22 21 19 24 24 C 1.38955 * 120.00002 * 180.02562 * 22 21 19 25 25 N 1.31411 * 119.99947 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99994 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47040 * 59.99715 * 26 24 22 28 28 H 1.48499 * 109.46963 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.46800 * 300.00171 * 26 24 22 30 30 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 34 34 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 36 36 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 37 37 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 38 38 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 39 39 H 0.97003 * 119.99556 * 0.02562 * 7 5 2 40 40 H 1.08999 * 109.47146 * 59.99381 * 10 8 7 41 41 H 1.08998 * 109.47835 * 179.97438 * 10 8 7 42 42 H 1.09001 * 109.47403 * 179.97438 * 11 10 8 43 43 H 1.09001 * 109.47524 * 59.99381 * 11 10 8 44 44 H 1.09001 * 109.47602 * 300.00262 * 12 11 10 45 45 H 1.08999 * 109.47215 * 179.97438 * 12 11 10 46 46 H 1.08999 * 109.47053 * 179.97438 * 13 12 11 47 47 H 1.09001 * 109.47137 * 60.00054 * 13 12 11 48 48 H 1.09002 * 109.46513 * 184.99574 * 16 14 13 49 49 H 1.08997 * 109.47001 * 304.99620 * 16 14 13 50 50 H 1.00899 * 111.00581 * 56.04255 * 17 16 14 51 51 H 1.08997 * 109.47062 * 299.99331 * 18 17 16 52 52 H 1.09002 * 109.47299 * 59.99422 * 18 17 16 53 53 H 0.97006 * 120.00024 * 0.02562 * 21 19 18 54 54 H 0.96998 * 119.99665 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7104 -1.2305 6 8 1.2442 -1.1709 -2.0290 7 7 3.3574 -0.8340 -1.4436 8 6 3.8457 -1.5251 -2.6394 9 1 3.1734 -1.3261 -3.4740 10 6 3.8967 -3.0309 -2.3733 11 6 4.8404 -3.3101 -1.2018 12 6 6.2432 -2.8052 -1.5456 13 6 6.1923 -1.2993 -1.8118 14 6 5.2485 -1.0202 -2.9831 15 1 5.6118 -1.5343 -3.8729 16 6 5.1980 0.4856 -3.2497 17 7 6.5189 0.9484 -3.6960 18 6 6.5084 2.3932 -3.9615 19 6 7.8773 2.8304 -4.4156 20 8 8.7735 2.0184 -4.5084 21 7 8.1056 4.1237 -4.7185 22 6 9.3510 4.5215 -5.1310 23 1 10.1490 3.7985 -5.2136 24 6 9.5866 5.8550 -5.4428 25 7 8.6157 6.7348 -5.3418 26 14 11.2833 6.3969 -6.0056 27 1 11.6494 5.6682 -7.2466 28 1 11.2729 7.8575 -6.2734 29 1 12.2767 6.0959 -4.9435 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6768 1.9562 0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 -1.7489 1.2492 37 1 3.1300 -0.7217 1.2490 38 1 1.6767 -0.2075 2.1393 39 1 3.9877 -0.4660 -0.8047 40 1 2.8974 -3.3906 -2.1284 41 1 4.2596 -3.5451 -3.2632 42 1 4.8764 -4.3828 -1.0119 43 1 4.4771 -2.7959 -0.3120 44 1 6.6066 -3.3193 -2.4354 45 1 6.9155 -3.0037 -0.7109 46 1 7.1917 -0.9396 -2.0562 47 1 5.8290 -0.7852 -0.9219 48 1 4.4596 0.6928 -4.0243 49 1 4.9204 1.0076 -2.3340 50 1 6.8274 0.4336 -4.5071 51 1 5.7790 2.6141 -4.7408 52 1 6.2400 2.9281 -3.0505 53 1 7.3889 4.7731 -4.6439 54 1 8.7802 7.6656 -5.5591 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669980705.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:12 Heat of formation + Delta-G solvation = -129.587267 kcal Electronic energy + Delta-G solvation = -30768.136175 eV Core-core repulsion = 26737.273253 eV Total energy + Delta-G solvation = -4030.862922 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.65046 -40.18766 -39.57481 -36.70968 -36.51150 -35.79772 -34.59043 -33.28620 -32.27912 -30.82875 -28.59648 -28.20566 -27.98436 -26.48524 -24.68438 -24.49898 -23.12228 -22.08734 -21.14994 -20.53467 -19.98875 -19.87422 -17.89006 -17.77844 -17.00541 -16.92765 -16.49377 -16.32665 -16.14794 -15.81822 -15.52431 -15.37366 -15.08750 -14.99958 -14.74380 -14.71802 -14.28283 -14.17779 -13.58421 -13.50394 -13.33294 -13.28291 -13.15264 -13.05694 -13.00965 -12.90778 -12.77462 -12.64961 -12.61315 -12.59339 -12.42867 -12.12496 -11.89006 -11.85878 -11.82341 -11.49776 -11.39046 -11.24256 -10.95184 -10.61829 -10.34103 -10.01579 -9.96710 -9.31396 -8.46443 -5.95230 1.40020 1.41908 1.52837 1.69636 2.05661 2.24929 2.29132 2.88753 3.20876 3.48135 3.65354 3.73310 3.82857 3.83530 3.88634 3.95947 4.16256 4.27456 4.28700 4.33491 4.36444 4.47961 4.51937 4.56375 4.59921 4.66343 4.68958 4.72590 4.73328 4.78008 4.83700 4.90616 4.95973 4.96594 5.01638 5.03292 5.16481 5.22453 5.24066 5.28879 5.34812 5.36151 5.37166 5.40863 5.52798 5.55930 5.63605 5.88257 6.09581 6.38828 6.59725 6.60152 7.12647 7.30283 7.56478 8.11557 8.70791 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014643 B = 0.002291 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.732803 B =12220.864879 C =13460.710343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.085 4.085 3 C -0.141 4.141 4 C -0.137 4.137 5 C 0.520 3.480 6 O -0.585 6.585 7 N -0.707 5.707 8 C 0.158 3.842 9 H 0.067 0.933 10 C -0.123 4.123 11 C -0.110 4.110 12 C -0.117 4.117 13 C -0.103 4.103 14 C -0.081 4.081 15 H 0.083 0.917 16 C 0.069 3.931 17 N -0.672 5.672 18 C 0.065 3.935 19 C 0.439 3.561 20 O -0.621 6.621 21 N -0.574 5.574 22 C -0.334 4.334 23 H 0.079 0.921 24 C -0.013 4.013 25 N -0.921 5.921 26 Si 0.992 3.008 27 H -0.272 1.272 28 H -0.271 1.271 29 H -0.271 1.271 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.409 0.591 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.062 0.938 47 H 0.065 0.935 48 H 0.026 0.974 49 H 0.079 0.921 50 H 0.343 0.657 51 H 0.060 0.940 52 H 0.104 0.896 53 H 0.396 0.604 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.054 -15.124 14.130 25.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.088 4.088 3 C -0.198 4.198 4 C -0.194 4.194 5 C 0.307 3.693 6 O -0.465 6.465 7 N -0.359 5.359 8 C 0.052 3.948 9 H 0.085 0.915 10 C -0.162 4.162 11 C -0.147 4.147 12 C -0.155 4.155 13 C -0.140 4.140 14 C -0.100 4.100 15 H 0.102 0.898 16 C -0.060 4.060 17 N -0.304 5.304 18 C -0.068 4.068 19 C 0.227 3.773 20 O -0.508 6.508 21 N -0.211 5.211 22 C -0.463 4.463 23 H 0.097 0.903 24 C -0.213 4.213 25 N -0.562 5.562 26 Si 0.816 3.184 27 H -0.197 1.197 28 H -0.195 1.195 29 H -0.196 1.196 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.247 0.753 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.044 0.956 49 H 0.097 0.903 50 H 0.161 0.839 51 H 0.078 0.922 52 H 0.122 0.878 53 H 0.230 0.770 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.762 -15.699 14.095 25.750 hybrid contribution 0.132 0.972 -1.250 1.589 sum -14.631 -14.727 12.845 24.412 Atomic orbital electron populations 1.21650 0.92411 1.02012 1.02267 1.20858 0.97746 0.97026 0.93181 1.21893 1.01800 0.92832 1.03297 1.21870 1.01828 1.00124 0.95627 1.21089 0.82194 0.78536 0.87463 1.90665 1.56476 1.50784 1.48585 1.46068 1.06765 1.57804 1.25280 1.20816 0.94102 0.92151 0.87706 0.91511 1.21831 0.99626 0.94754 0.99986 1.21449 0.94500 1.01116 0.97657 1.21550 0.96828 0.95344 1.01763 1.21428 0.99586 0.96121 0.96897 1.21326 0.94057 0.94401 1.00226 0.89832 1.22022 0.88295 0.95604 1.00078 1.60090 1.26960 1.02059 1.41275 1.21523 0.92642 0.91048 1.01561 1.20844 0.91436 0.82441 0.82623 1.90488 1.47813 1.53222 1.59238 1.41939 1.12052 1.07896 1.59234 1.19630 0.89449 0.93901 1.43353 0.90267 1.26044 1.03061 0.95123 0.97075 1.69667 1.33883 1.03724 1.48929 0.84998 0.77311 0.77350 0.78750 1.19705 1.19535 1.19628 0.93651 0.89884 0.93218 0.89576 0.91290 0.93200 0.92692 0.91143 0.89633 0.75348 0.92942 0.90633 0.91464 0.91726 0.92136 0.91307 0.91905 0.91686 0.95600 0.90278 0.83864 0.92231 0.87797 0.77037 0.91301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 7.76 71.98 0.56 -1.38 16 2 C -0.08 -1.20 0.87 -52.93 -0.05 -1.25 16 3 C -0.14 -1.68 8.37 71.98 0.60 -1.08 16 4 C -0.14 -1.33 8.37 71.98 0.60 -0.73 16 5 C 0.52 10.45 6.45 87.66 0.56 11.01 16 6 O -0.59 -16.81 15.64 -3.03 -0.05 -16.86 16 7 N -0.71 -11.53 3.40 -442.55 -1.51 -13.04 16 8 C 0.16 2.88 2.23 44.99 0.10 2.98 16 9 H 0.07 1.52 7.58 -2.38 -0.02 1.50 16 10 C -0.12 -2.07 5.60 30.59 0.17 -1.90 16 11 C -0.11 -1.52 5.77 30.60 0.18 -1.35 16 12 C -0.12 -1.77 5.92 30.60 0.18 -1.59 16 13 C -0.10 -1.83 4.92 30.59 0.15 -1.68 16 14 C -0.08 -1.50 2.12 -10.79 -0.02 -1.52 16 15 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 16 C 0.07 1.52 4.84 86.31 0.42 1.94 16 17 N -0.67 -19.90 5.58 -517.92 -2.89 -22.79 16 18 C 0.06 2.17 6.17 85.56 0.53 2.70 16 19 C 0.44 20.63 7.82 87.66 0.69 21.31 16 20 O -0.62 -33.92 15.78 -3.05 -0.05 -33.97 16 21 N -0.57 -29.32 5.29 -306.98 -1.62 -30.94 16 22 C -0.33 -18.90 9.68 84.04 0.81 -18.08 16 23 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 24 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 25 N -0.92 -49.66 13.05 21.66 0.28 -49.38 16 26 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 28 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 29 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 30 H 0.04 0.84 8.10 -2.39 -0.02 0.82 16 31 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.05 0.87 8.10 -2.38 -0.02 0.85 16 33 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.72 7.57 -2.39 -0.02 0.70 16 35 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.07 0.55 7.56 -2.39 -0.02 0.53 16 38 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.41 5.26 5.51 -92.71 -0.51 4.75 16 40 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.06 0.85 7.60 -2.39 -0.02 0.83 16 44 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.06 1.47 7.75 -2.39 -0.02 1.45 16 47 H 0.06 1.01 6.51 -2.39 -0.02 0.99 16 48 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.08 1.60 7.61 -2.39 -0.02 1.58 16 50 H 0.34 10.88 8.43 -89.69 -0.76 10.13 16 51 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 52 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 53 H 0.40 19.24 7.90 -92.70 -0.73 18.51 16 54 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -69.96 421.68 1.04 -68.92 By element: Atomic # 1 Polarization: 45.24 SS G_CDS: -1.10 Total: 44.14 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 5.95 Total: 9.15 kcal Atomic # 7 Polarization: -110.42 SS G_CDS: -5.73 Total: -116.15 kcal Atomic # 8 Polarization: -50.74 SS G_CDS: -0.10 Total: -50.83 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -69.96 1.04 -68.92 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669980705.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.669 kcal (2) G-P(sol) polarization free energy of solvation -69.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds