Wall clock time and date at job start Tue Mar 31 2020 22:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47410 * 2 1 4 4 C 1.53007 * 109.47007 * 239.99923 * 2 1 3 5 5 C 1.50696 * 109.47408 * 120.00433 * 2 1 3 6 6 O 1.21287 * 119.99595 * 359.97438 * 5 2 1 7 7 N 1.34780 * 120.00373 * 180.02562 * 5 2 1 8 8 C 1.46506 * 120.00088 * 180.02562 * 7 5 2 9 9 H 1.09000 * 109.46872 * 324.99405 * 8 7 5 10 10 C 1.52997 * 109.47277 * 84.99368 * 8 7 5 11 11 C 1.52996 * 109.47165 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46972 * 300.00293 * 11 10 8 13 13 C 1.52997 * 109.47415 * 59.99860 * 12 11 10 14 14 C 1.52999 * 109.46691 * 204.99775 * 8 7 5 15 15 H 1.09000 * 109.47160 * 299.99453 * 14 8 7 16 16 C 1.52997 * 109.47592 * 59.99786 * 14 8 7 17 17 N 1.46900 * 109.47171 * 184.99707 * 16 14 8 18 18 C 1.46904 * 110.99705 * 179.97438 * 17 16 14 19 19 C 1.50704 * 109.46884 * 179.97438 * 18 17 16 20 20 O 1.21290 * 119.99639 * 0.02562 * 19 18 17 21 21 N 1.34774 * 119.99845 * 180.02562 * 19 18 17 22 22 C 1.37105 * 119.99595 * 180.02562 * 21 19 18 23 23 H 1.07999 * 119.99802 * 0.02562 * 22 21 19 24 24 C 1.38944 * 119.99650 * 180.02562 * 22 21 19 25 25 N 1.31421 * 120.00214 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00159 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47109 * 59.99748 * 26 24 22 28 28 H 1.48504 * 109.47694 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.47129 * 300.00271 * 26 24 22 30 30 H 1.09007 * 109.46892 * 299.99947 * 1 2 3 31 31 H 1.09002 * 109.47043 * 59.99806 * 1 2 3 32 32 H 1.08994 * 109.47221 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47368 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47176 * 300.00112 * 3 2 1 35 35 H 1.08997 * 109.46928 * 60.00286 * 3 2 1 36 36 H 1.08994 * 109.47176 * 300.00085 * 4 2 1 37 37 H 1.09002 * 109.46998 * 60.00243 * 4 2 1 38 38 H 1.09001 * 109.47129 * 179.97438 * 4 2 1 39 39 H 0.97000 * 119.99750 * 359.97438 * 7 5 2 40 40 H 1.09000 * 109.47140 * 60.00200 * 10 8 7 41 41 H 1.09001 * 109.47375 * 300.00183 * 10 8 7 42 42 H 1.08992 * 109.47534 * 180.02562 * 11 10 8 43 43 H 1.08996 * 109.47134 * 59.99508 * 11 10 8 44 44 H 1.09000 * 109.46986 * 299.99742 * 12 11 10 45 45 H 1.09001 * 109.47601 * 180.02562 * 12 11 10 46 46 H 1.09001 * 109.46922 * 180.02562 * 13 12 11 47 47 H 1.09000 * 109.47140 * 59.99976 * 13 12 11 48 48 H 1.09001 * 109.46992 * 305.00257 * 16 14 8 49 49 H 1.08998 * 109.47097 * 64.99445 * 16 14 8 50 50 H 1.00898 * 110.99922 * 303.95716 * 17 16 14 51 51 H 1.08998 * 109.47285 * 300.00060 * 18 17 16 52 52 H 1.09003 * 109.47029 * 60.00806 * 18 17 16 53 53 H 0.96993 * 119.99907 * 0.02562 * 21 19 18 54 54 H 0.97003 * 119.99886 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2304 6 8 1.2442 -1.1711 2.0289 7 7 3.3574 -0.8332 1.4439 8 6 3.8458 -1.5244 2.6398 9 1 3.1730 -1.3262 3.4741 10 6 3.8978 -3.0300 2.3731 11 6 4.4072 -3.7519 3.6222 12 6 5.8094 -3.2462 3.9672 13 6 5.7574 -1.7406 4.2339 14 6 5.2481 -1.0186 2.9842 15 1 5.9209 -1.2167 2.1498 16 6 5.1960 0.4871 3.2509 17 7 6.5582 0.9941 3.4637 18 6 6.5472 2.4401 3.7227 19 6 7.9588 2.9228 3.9363 20 8 8.8829 2.1394 3.8780 21 7 8.1942 4.2250 4.1920 22 6 9.4784 4.6642 4.3858 23 1 10.3014 3.9668 4.3331 24 6 9.7211 6.0065 4.6500 25 7 8.7196 6.8552 4.7137 26 14 11.4708 6.6052 4.9133 27 1 12.2772 6.3274 3.6978 28 1 11.4596 8.0666 5.1772 29 1 12.0666 5.8975 6.0750 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2074 -2.1393 38 1 3.1299 -0.7209 -1.2495 39 1 3.9878 -0.4645 0.8054 40 1 4.5707 -3.2282 1.5387 41 1 2.8988 -3.3904 2.1277 42 1 4.4448 -4.8245 3.4321 43 1 3.7342 -3.5537 4.4563 44 1 6.4826 -3.4444 3.1332 45 1 6.1726 -3.7608 4.8569 46 1 6.7565 -1.3803 4.4793 47 1 5.0842 -1.5424 5.0680 48 1 4.7498 0.9925 2.3944 49 1 4.5942 0.6781 4.1394 50 1 7.0167 0.4958 4.2118 51 1 6.1107 2.9587 2.8692 52 1 5.9548 2.6450 4.6144 53 1 7.4551 4.8513 4.2390 54 1 8.8891 7.7924 4.8978 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669980706.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:16 Heat of formation + Delta-G solvation = -132.935476 kcal Electronic energy + Delta-G solvation = -30520.983466 eV Core-core repulsion = 26489.975354 eV Total energy + Delta-G solvation = -4031.008111 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.52113 -40.21995 -39.60235 -36.71256 -36.49261 -35.79696 -35.16936 -33.28943 -32.25658 -30.54512 -28.57928 -28.20986 -27.97881 -26.51281 -24.90369 -24.59221 -22.53597 -22.01128 -21.19437 -21.08034 -20.00908 -19.87289 -17.91679 -17.72266 -17.42271 -17.04698 -16.46060 -16.19282 -16.06943 -15.78199 -15.53358 -15.25244 -15.11480 -14.89037 -14.77319 -14.56793 -14.47692 -14.23889 -13.86791 -13.65335 -13.52214 -13.28688 -13.18499 -13.06486 -12.96234 -12.86177 -12.76695 -12.62418 -12.57171 -12.43060 -12.18562 -12.12271 -11.93335 -11.88989 -11.83906 -11.50433 -11.48845 -11.39108 -11.18789 -10.57503 -10.35039 -10.01861 -9.98720 -9.35293 -8.46510 -5.95465 1.40059 1.42068 1.52976 1.66945 2.04961 2.20393 2.29086 2.87998 3.20678 3.47744 3.61806 3.72290 3.74802 3.84999 3.88407 3.94931 4.18848 4.23525 4.28324 4.32062 4.33257 4.42967 4.48149 4.49882 4.53359 4.57794 4.69327 4.71828 4.73069 4.77729 4.83705 4.93400 4.95559 4.96393 5.00400 5.02885 5.12366 5.18972 5.22890 5.24934 5.27744 5.34299 5.35266 5.37877 5.40780 5.49432 5.59511 5.87737 6.08888 6.38443 6.57710 6.59793 7.12303 7.27895 7.55953 8.10927 8.70669 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012274 B = 0.002376 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.776870 B =11780.550086 C =13561.052190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.085 4.085 3 C -0.141 4.141 4 C -0.137 4.137 5 C 0.520 3.480 6 O -0.584 6.584 7 N -0.713 5.713 8 C 0.158 3.842 9 H 0.066 0.934 10 C -0.120 4.120 11 C -0.113 4.113 12 C -0.115 4.115 13 C -0.116 4.116 14 C -0.079 4.079 15 H 0.089 0.911 16 C 0.067 3.933 17 N -0.675 5.675 18 C 0.063 3.937 19 C 0.439 3.561 20 O -0.622 6.622 21 N -0.573 5.573 22 C -0.334 4.334 23 H 0.080 0.920 24 C -0.013 4.013 25 N -0.921 5.921 26 Si 0.993 3.007 27 H -0.271 1.271 28 H -0.271 1.271 29 H -0.272 1.272 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.411 0.589 40 H 0.074 0.926 41 H 0.052 0.948 42 H 0.075 0.925 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.079 0.921 49 H 0.026 0.974 50 H 0.344 0.656 51 H 0.105 0.895 52 H 0.060 0.940 53 H 0.396 0.604 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.601 -16.070 -9.844 24.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.088 4.088 3 C -0.198 4.198 4 C -0.195 4.195 5 C 0.308 3.692 6 O -0.464 6.464 7 N -0.364 5.364 8 C 0.053 3.947 9 H 0.084 0.916 10 C -0.158 4.158 11 C -0.151 4.151 12 C -0.152 4.152 13 C -0.154 4.154 14 C -0.098 4.098 15 H 0.107 0.893 16 C -0.062 4.062 17 N -0.308 5.308 18 C -0.069 4.069 19 C 0.226 3.774 20 O -0.508 6.508 21 N -0.210 5.210 22 C -0.463 4.463 23 H 0.098 0.902 24 C -0.213 4.213 25 N -0.562 5.562 26 Si 0.816 3.184 27 H -0.196 1.196 28 H -0.195 1.195 29 H -0.197 1.197 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.248 0.752 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.079 0.921 48 H 0.098 0.902 49 H 0.044 0.956 50 H 0.164 0.836 51 H 0.123 0.877 52 H 0.078 0.922 53 H 0.230 0.770 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.415 -16.618 -9.943 24.751 hybrid contribution 0.282 1.035 1.117 1.549 sum -15.133 -15.582 -8.826 23.446 Atomic orbital electron populations 1.21652 0.92358 1.02039 1.02299 1.20860 0.97777 0.97017 0.93124 1.21895 1.01850 0.92803 1.03278 1.21870 1.01888 1.00088 0.95619 1.21101 0.82138 0.78501 0.87473 1.90667 1.56427 1.50713 1.48575 1.46077 1.06971 1.57988 1.25383 1.20856 0.94214 0.92036 0.87574 0.91581 1.21819 1.01039 0.93815 0.99156 1.21474 0.96449 1.00099 0.97071 1.21511 0.96990 0.94578 1.02153 1.21584 1.01171 0.95969 0.96651 1.21317 0.95415 0.93231 0.99864 0.89308 1.22035 0.88274 0.95301 1.00554 1.60143 1.18104 1.01834 1.50743 1.21540 0.92533 0.90834 1.02008 1.20828 0.91931 0.82435 0.82182 1.90486 1.47250 1.55479 1.57586 1.41935 1.08712 1.07727 1.62670 1.19635 0.85591 0.93632 1.47490 0.90240 1.26045 1.03508 0.95329 0.96404 1.69672 1.32844 1.04554 1.49115 0.84994 0.77171 0.77313 0.78908 1.19616 1.19539 1.19693 0.93607 0.89870 0.93184 0.91255 0.89608 0.93187 0.92708 0.89658 0.91101 0.75243 0.90725 0.92962 0.90634 0.92420 0.91372 0.91129 0.91794 0.92099 0.90225 0.95576 0.83627 0.87725 0.92199 0.77023 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 7.76 71.98 0.56 -1.42 16 2 C -0.08 -1.24 0.87 -52.93 -0.05 -1.29 16 3 C -0.14 -1.77 8.37 71.98 0.60 -1.16 16 4 C -0.14 -1.42 8.37 71.98 0.60 -0.82 16 5 C 0.52 10.72 6.45 87.66 0.56 11.28 16 6 O -0.58 -16.97 15.64 -3.05 -0.05 -17.02 16 7 N -0.71 -12.07 4.09 -442.52 -1.81 -13.88 16 8 C 0.16 2.96 1.90 44.99 0.09 3.05 16 9 H 0.07 1.55 7.58 -2.39 -0.02 1.54 16 10 C -0.12 -2.03 5.49 30.59 0.17 -1.86 16 11 C -0.11 -1.74 5.92 30.59 0.18 -1.56 16 12 C -0.11 -1.82 5.92 30.59 0.18 -1.64 16 13 C -0.12 -2.19 4.98 30.61 0.15 -2.04 16 14 C -0.08 -1.50 1.98 -10.78 -0.02 -1.52 16 15 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 16 C 0.07 1.52 5.06 86.30 0.44 1.95 16 17 N -0.68 -20.34 6.12 -517.92 -3.17 -23.51 16 18 C 0.06 2.14 6.17 85.56 0.53 2.67 16 19 C 0.44 20.67 7.82 87.66 0.69 21.36 16 20 O -0.62 -34.02 15.78 -3.06 -0.05 -34.06 16 21 N -0.57 -29.29 5.29 -306.98 -1.62 -30.91 16 22 C -0.33 -18.89 9.68 84.04 0.81 -18.07 16 23 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 24 C -0.01 -0.70 5.50 84.92 0.47 -0.23 16 25 N -0.92 -49.59 13.05 21.66 0.28 -49.30 16 26 Si 0.99 42.67 29.55 68.60 2.03 44.70 16 27 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 28 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 29 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 30 H 0.04 0.86 8.10 -2.38 -0.02 0.84 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 33 H 0.07 0.78 7.56 -2.39 -0.02 0.76 16 34 H 0.09 0.80 8.14 -2.39 -0.02 0.79 16 35 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.07 0.61 7.57 -2.39 -0.02 0.59 16 39 H 0.41 5.40 7.23 -92.71 -0.67 4.73 16 40 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.06 1.39 6.68 -2.39 -0.02 1.37 16 47 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.08 1.66 7.31 -2.39 -0.02 1.64 16 49 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.34 11.02 6.69 -89.70 -0.60 10.42 16 51 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 52 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 53 H 0.40 19.25 7.90 -92.71 -0.73 18.51 16 54 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -70.22 423.52 0.46 -69.76 By element: Atomic # 1 Polarization: 46.65 SS G_CDS: -1.11 Total: 45.54 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 5.96 Total: 8.70 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -6.32 Total: -117.61 kcal Atomic # 8 Polarization: -50.98 SS G_CDS: -0.10 Total: -51.08 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -70.22 0.46 -69.76 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669980706.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.180 kcal (2) G-P(sol) polarization free energy of solvation -70.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds