Wall clock time and date at job start Tue Mar 31 2020 22:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46782 * 2 1 4 4 C 1.53000 * 109.47188 * 240.00162 * 2 1 3 5 5 C 1.50691 * 109.47232 * 119.99925 * 2 1 3 6 6 O 1.21287 * 120.00271 * 0.02562 * 5 2 1 7 7 N 1.34774 * 120.00411 * 180.02562 * 5 2 1 8 8 C 1.46499 * 120.00678 * 179.97438 * 7 5 2 9 9 H 1.09003 * 109.46882 * 34.99964 * 8 7 5 10 10 C 1.53004 * 109.47180 * 275.00481 * 8 7 5 11 11 C 1.52999 * 109.46875 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.47102 * 60.00324 * 11 10 8 13 13 C 1.53004 * 109.46682 * 299.99380 * 12 11 10 14 14 C 1.52998 * 109.47462 * 155.00264 * 8 7 5 15 15 H 1.08994 * 109.47046 * 59.99983 * 14 8 7 16 16 C 1.53004 * 109.46579 * 300.00368 * 14 8 7 17 17 N 1.46912 * 109.46707 * 175.00020 * 16 14 8 18 18 C 1.46896 * 110.99636 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.46774 * 179.97438 * 18 17 16 20 20 O 1.21292 * 119.99840 * 359.97438 * 19 18 17 21 21 N 1.34775 * 119.99773 * 180.02562 * 19 18 17 22 22 C 1.37102 * 120.00039 * 179.97438 * 21 19 18 23 23 H 1.08005 * 119.99610 * 0.02562 * 22 21 19 24 24 C 1.38946 * 120.00384 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99833 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00108 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47297 * 180.02562 * 26 24 22 28 28 H 1.48503 * 109.47261 * 60.00199 * 26 24 22 29 29 H 1.48500 * 109.47454 * 300.00192 * 26 24 22 30 30 H 1.08992 * 109.47371 * 299.99691 * 1 2 3 31 31 H 1.09003 * 109.47160 * 60.00361 * 1 2 3 32 32 H 1.09007 * 109.46927 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47248 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47379 * 300.00060 * 3 2 1 35 35 H 1.09001 * 109.47376 * 59.99688 * 3 2 1 36 36 H 1.09001 * 109.46910 * 299.99798 * 4 2 1 37 37 H 1.09000 * 109.47045 * 59.99896 * 4 2 1 38 38 H 1.09002 * 109.46905 * 179.97438 * 4 2 1 39 39 H 0.97006 * 119.99383 * 0.02562 * 7 5 2 40 40 H 1.08994 * 109.46941 * 299.99780 * 10 8 7 41 41 H 1.08997 * 109.47082 * 59.99435 * 10 8 7 42 42 H 1.08997 * 109.46830 * 179.97438 * 11 10 8 43 43 H 1.08994 * 109.47539 * 299.99882 * 11 10 8 44 44 H 1.08994 * 109.47284 * 59.99402 * 12 11 10 45 45 H 1.09000 * 109.47251 * 180.02562 * 12 11 10 46 46 H 1.08994 * 109.47278 * 300.00025 * 13 12 11 47 47 H 1.08999 * 109.46719 * 179.97438 * 13 12 11 48 48 H 1.08996 * 109.47703 * 55.00491 * 16 14 8 49 49 H 1.09004 * 109.47404 * 294.99308 * 16 14 8 50 50 H 1.00901 * 110.99811 * 56.04667 * 17 16 14 51 51 H 1.09001 * 109.47275 * 60.00237 * 18 17 16 52 52 H 1.08996 * 109.47530 * 299.99593 * 18 17 16 53 53 H 0.96992 * 120.00503 * 359.97438 * 21 19 18 54 54 H 0.96993 * 119.99996 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0324 -0.7103 1.2304 6 8 1.2443 -1.1717 2.0286 7 7 3.3574 -0.8331 1.4440 8 6 3.8458 -1.5231 2.6404 9 1 3.1735 -2.3453 2.8855 10 6 3.8967 -0.5397 3.8114 11 6 4.4062 -1.2606 5.0610 12 6 5.8090 -1.8110 4.7960 13 6 5.7580 -2.7945 3.6250 14 6 5.2486 -2.0732 2.3750 15 1 5.9209 -1.2510 2.1300 16 6 5.1976 -3.0566 1.2040 17 7 6.5603 -3.4934 0.8718 18 6 6.5503 -4.4412 -0.2505 19 6 7.9624 -4.8654 -0.5622 20 8 8.8862 -4.4215 0.0864 21 7 8.1988 -5.7373 -1.5624 22 6 9.4835 -6.1229 -1.8464 23 1 10.3060 -5.7282 -1.2683 24 6 9.7272 -7.0222 -2.8772 25 7 8.7264 -7.5027 -3.5802 26 14 11.4776 -7.5469 -3.2645 27 1 11.4677 -8.5048 -4.3993 28 1 12.0746 -8.1988 -2.0712 29 1 12.2824 -6.3540 -3.6314 30 1 -0.3634 0.5137 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6767 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1392 38 1 3.1301 -0.7208 -1.2494 39 1 3.9877 -0.4637 0.8058 40 1 4.5690 0.2825 3.5663 41 1 2.8974 -0.1478 4.0004 42 1 4.4429 -0.5599 5.8951 43 1 3.7337 -2.0826 5.3059 44 1 6.4816 -0.9890 4.5510 45 1 6.1718 -2.3250 5.6861 46 1 5.0855 -3.6165 3.8699 47 1 6.7574 -3.1863 3.4359 48 1 4.7516 -2.5677 0.3380 49 1 4.5964 -3.9222 1.4824 50 1 7.0187 -3.8922 1.6773 51 1 6.1135 -3.9622 -1.1268 52 1 5.9587 -5.3163 0.0181 53 1 7.4602 -6.0920 -2.0814 54 1 7.8175 -7.2300 -3.3794 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669980707.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:19 Heat of formation + Delta-G solvation = -133.153451 kcal Electronic energy + Delta-G solvation = -30563.849873 eV Core-core repulsion = 26532.832310 eV Total energy + Delta-G solvation = -4031.017563 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.55163 -40.37655 -39.66363 -36.87874 -36.55868 -36.07550 -35.19778 -33.19103 -32.27359 -30.57381 -28.52219 -28.23445 -27.99003 -26.38093 -24.96658 -24.62937 -22.58028 -22.05563 -21.49903 -21.21609 -20.02172 -19.96163 -18.30839 -17.75996 -17.44954 -17.04286 -16.78378 -16.19974 -16.03756 -15.67078 -15.56920 -15.33999 -15.17763 -14.91904 -14.80891 -14.73217 -14.52719 -14.32517 -13.93260 -13.72111 -13.35355 -13.31816 -13.26421 -13.08914 -12.97962 -12.86620 -12.73481 -12.65009 -12.60778 -12.21520 -11.97113 -11.91755 -11.91386 -11.89600 -11.86205 -11.53017 -11.51848 -11.42682 -11.21979 -10.60161 -10.42367 -10.11692 -10.01685 -9.42986 -8.92937 -6.07077 1.52467 1.54867 1.64358 1.82883 1.99822 2.17551 2.39925 2.76772 3.16425 3.34205 3.58895 3.68273 3.70751 3.82023 3.84772 3.92566 4.10645 4.15656 4.22177 4.26195 4.26751 4.35675 4.39051 4.45805 4.48335 4.50181 4.64632 4.69413 4.70644 4.73613 4.81352 4.89734 4.93347 4.94038 4.97279 5.00413 5.09479 5.16120 5.19575 5.22563 5.25091 5.31756 5.33016 5.34904 5.46497 5.56044 5.59009 5.90507 5.97271 6.30360 6.54792 6.57314 6.73799 7.25208 7.43660 7.91368 8.54776 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012282 B = 0.002383 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.211101 B =11745.525803 C =13523.622795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.085 4.085 3 C -0.137 4.137 4 C -0.141 4.141 5 C 0.520 3.480 6 O -0.584 6.584 7 N -0.714 5.714 8 C 0.159 3.841 9 H 0.066 0.934 10 C -0.120 4.120 11 C -0.113 4.113 12 C -0.115 4.115 13 C -0.116 4.116 14 C -0.079 4.079 15 H 0.089 0.911 16 C 0.067 3.933 17 N -0.675 5.675 18 C 0.063 3.937 19 C 0.443 3.557 20 O -0.616 6.616 21 N -0.587 5.587 22 C -0.410 4.410 23 H 0.074 0.926 24 C -0.042 4.042 25 N -0.917 5.917 26 Si 1.133 2.867 27 H -0.273 1.273 28 H -0.273 1.273 29 H -0.272 1.272 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.411 0.589 40 H 0.074 0.926 41 H 0.052 0.948 42 H 0.075 0.925 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.060 0.940 47 H 0.063 0.937 48 H 0.080 0.920 49 H 0.027 0.973 50 H 0.344 0.656 51 H 0.106 0.894 52 H 0.062 0.938 53 H 0.384 0.616 54 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.666 17.121 9.699 25.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.088 4.088 3 C -0.195 4.195 4 C -0.198 4.198 5 C 0.308 3.692 6 O -0.463 6.463 7 N -0.364 5.364 8 C 0.053 3.947 9 H 0.084 0.916 10 C -0.158 4.158 11 C -0.151 4.151 12 C -0.152 4.152 13 C -0.154 4.154 14 C -0.098 4.098 15 H 0.107 0.893 16 C -0.062 4.062 17 N -0.308 5.308 18 C -0.069 4.069 19 C 0.230 3.770 20 O -0.501 6.501 21 N -0.226 5.226 22 C -0.539 4.539 23 H 0.092 0.908 24 C -0.241 4.241 25 N -0.557 5.557 26 Si 0.953 3.047 27 H -0.198 1.198 28 H -0.198 1.198 29 H -0.197 1.197 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.247 0.753 40 H 0.093 0.907 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.098 0.902 49 H 0.045 0.955 50 H 0.164 0.836 51 H 0.124 0.876 52 H 0.079 0.921 53 H 0.218 0.782 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.547 16.669 9.287 23.994 hybrid contribution -1.520 -0.172 0.967 1.810 sum -16.067 16.497 10.254 25.208 Atomic orbital electron populations 1.21654 0.92334 1.01926 1.02440 1.20860 0.97794 0.97372 0.92750 1.21870 1.01873 0.92317 1.03415 1.21894 1.01816 1.00061 0.96046 1.21101 0.82128 0.78591 0.87389 1.90668 1.56428 1.50374 1.48869 1.46077 1.06981 1.58124 1.25264 1.20854 0.94158 0.94608 0.85049 0.91555 1.21821 1.01067 0.98340 0.94611 1.21476 0.96416 1.00065 0.97137 1.21513 0.97019 0.98859 0.97844 1.21583 1.01127 0.98410 0.94263 1.21315 0.95469 0.98442 0.94604 0.89315 1.22047 0.88131 0.97493 0.98487 1.60159 1.18224 1.42640 1.09801 1.21549 0.92197 0.95970 0.97210 1.20824 0.92071 0.81774 0.82284 1.90496 1.47369 1.58955 1.53322 1.41999 1.08367 1.40932 1.31296 1.20521 0.85522 1.28348 1.19494 0.90823 1.27824 1.10292 0.93708 0.92232 1.70970 1.00138 1.43901 1.40647 0.82642 0.68235 0.76893 0.76973 1.19779 1.19795 1.19742 0.93166 0.89866 0.93600 0.91119 0.89641 0.92696 0.93188 0.89597 0.91290 0.75258 0.90727 0.92927 0.90603 0.92401 0.91365 0.91109 0.92075 0.91859 0.90174 0.95495 0.83603 0.87609 0.92058 0.78175 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 7.76 71.98 0.56 -1.39 16 2 C -0.08 -1.22 0.87 -52.93 -0.05 -1.27 16 3 C -0.14 -1.39 8.37 71.98 0.60 -0.79 16 4 C -0.14 -1.72 8.37 71.98 0.60 -1.12 16 5 C 0.52 10.58 6.45 87.65 0.56 11.14 16 6 O -0.58 -16.80 15.65 -3.05 -0.05 -16.85 16 7 N -0.71 -11.87 4.09 -442.53 -1.81 -13.68 16 8 C 0.16 2.92 1.90 44.99 0.09 3.00 16 9 H 0.07 1.54 7.58 -2.39 -0.02 1.52 16 10 C -0.12 -2.01 5.49 30.60 0.17 -1.84 16 11 C -0.11 -1.72 5.92 30.60 0.18 -1.54 16 12 C -0.11 -1.80 5.92 30.60 0.18 -1.62 16 13 C -0.12 -2.17 4.98 30.61 0.15 -2.01 16 14 C -0.08 -1.47 1.98 -10.78 -0.02 -1.49 16 15 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 16 C 0.07 1.49 5.06 86.30 0.44 1.92 16 17 N -0.68 -20.08 6.12 -517.90 -3.17 -23.25 16 18 C 0.06 2.10 6.17 85.56 0.53 2.63 16 19 C 0.44 20.75 7.82 87.66 0.69 21.44 16 20 O -0.62 -33.81 15.78 -3.07 -0.05 -33.86 16 21 N -0.59 -29.64 5.28 -306.98 -1.62 -31.26 16 22 C -0.41 -23.32 9.68 84.04 0.81 -22.50 16 23 H 0.07 4.50 7.16 -2.91 -0.02 4.48 16 24 C -0.04 -2.30 5.50 84.93 0.47 -1.83 16 25 N -0.92 -51.08 13.68 21.66 0.30 -50.78 16 26 Si 1.13 48.23 29.92 68.60 2.05 50.28 16 27 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 28 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 29 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 30 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 31 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.04 0.85 8.10 -2.38 -0.02 0.83 16 33 H 0.07 0.59 7.56 -2.39 -0.02 0.57 16 34 H 0.08 0.61 8.14 -2.39 -0.02 0.60 16 35 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.09 0.78 8.14 -2.39 -0.02 0.77 16 38 H 0.07 0.75 7.57 -2.39 -0.02 0.74 16 39 H 0.41 5.28 7.23 -92.70 -0.67 4.61 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 42 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.06 1.36 6.68 -2.39 -0.02 1.35 16 48 H 0.08 1.63 7.31 -2.39 -0.02 1.62 16 49 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.34 10.93 6.69 -89.69 -0.60 10.33 16 51 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 52 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 53 H 0.38 17.82 6.73 -92.71 -0.62 17.20 16 54 H 0.26 13.94 6.77 -92.71 -0.63 13.31 16 Total: -1.00 -73.29 421.82 0.75 -72.54 By element: Atomic # 1 Polarization: 44.98 SS G_CDS: -0.86 Total: 44.12 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 5.96 Total: 2.73 kcal Atomic # 7 Polarization: -112.66 SS G_CDS: -6.31 Total: -118.97 kcal Atomic # 8 Polarization: -50.61 SS G_CDS: -0.10 Total: -50.71 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.05 Total: 50.28 kcal Total: -73.29 0.75 -72.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669980707.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.610 kcal (2) G-P(sol) polarization free energy of solvation -73.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds