Wall clock time and date at job start Tue Mar 31 2020 22:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47405 * 2 1 4 4 C 1.53002 * 109.47501 * 239.99818 * 2 1 3 5 5 C 1.50703 * 109.47006 * 119.99970 * 2 1 3 6 6 O 1.21278 * 119.99866 * 359.97438 * 5 2 1 7 7 N 1.34781 * 120.00101 * 179.97438 * 5 2 1 8 8 C 1.46499 * 119.99874 * 179.97438 * 7 5 2 9 9 H 1.09002 * 109.47391 * 325.00213 * 8 7 5 10 10 C 1.53000 * 109.46840 * 85.00543 * 8 7 5 11 11 C 1.52996 * 109.47328 * 59.99969 * 10 8 7 12 12 C 1.52993 * 109.47473 * 60.00001 * 11 10 8 13 13 C 1.53008 * 109.46733 * 300.00094 * 12 11 10 14 14 C 1.52996 * 109.47409 * 60.00092 * 13 12 11 15 15 H 1.09000 * 109.47054 * 59.99785 * 14 13 12 16 16 C 1.52997 * 109.47165 * 179.97438 * 14 13 12 17 17 N 1.46897 * 109.47347 * 294.99642 * 16 14 13 18 18 C 1.46901 * 111.00044 * 179.97438 * 17 16 14 19 19 C 1.50705 * 109.46715 * 180.02562 * 18 17 16 20 20 O 1.21293 * 120.00409 * 359.97438 * 19 18 17 21 21 N 1.34774 * 119.99512 * 180.02562 * 19 18 17 22 22 C 1.37102 * 120.00145 * 179.97438 * 21 19 18 23 23 H 1.07999 * 119.99251 * 0.02562 * 22 21 19 24 24 C 1.38944 * 120.00200 * 179.97438 * 22 21 19 25 25 N 1.31415 * 119.99884 * 180.02562 * 24 22 21 26 26 Si 1.86805 * 120.00247 * 359.97438 * 24 22 21 27 27 H 1.48497 * 109.46758 * 89.99850 * 26 24 22 28 28 H 1.48498 * 109.47027 * 210.00126 * 26 24 22 29 29 H 1.48504 * 109.47021 * 330.00170 * 26 24 22 30 30 H 1.08997 * 109.47550 * 299.99807 * 1 2 3 31 31 H 1.09000 * 109.47057 * 59.99966 * 1 2 3 32 32 H 1.09002 * 109.47281 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47469 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47041 * 300.00044 * 3 2 1 35 35 H 1.09001 * 109.46901 * 60.00031 * 3 2 1 36 36 H 1.09002 * 109.47197 * 300.00473 * 4 2 1 37 37 H 1.09000 * 109.46789 * 60.00052 * 4 2 1 38 38 H 1.08994 * 109.47707 * 180.02562 * 4 2 1 39 39 H 0.97002 * 119.99716 * 0.02562 * 7 5 2 40 40 H 1.09004 * 109.46724 * 180.02562 * 10 8 7 41 41 H 1.09001 * 109.47194 * 299.99493 * 10 8 7 42 42 H 1.09000 * 109.46870 * 299.99783 * 11 10 8 43 43 H 1.09004 * 109.47108 * 179.97438 * 11 10 8 44 44 H 1.09002 * 109.47722 * 180.02562 * 12 11 10 45 45 H 1.09004 * 109.46998 * 59.99561 * 12 11 10 46 46 H 1.09004 * 109.46943 * 299.99499 * 13 12 11 47 47 H 1.09001 * 109.46630 * 179.97438 * 13 12 11 48 48 H 1.08998 * 109.47097 * 55.00255 * 16 14 13 49 49 H 1.09001 * 109.46547 * 174.99739 * 16 14 13 50 50 H 1.00908 * 110.99502 * 56.04478 * 17 16 14 51 51 H 1.08990 * 109.47191 * 300.00185 * 18 17 16 52 52 H 1.08998 * 109.46916 * 60.00430 * 18 17 16 53 53 H 0.97007 * 120.00111 * 0.02562 * 21 19 18 54 54 H 0.96996 * 119.99782 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2441 -1.1709 2.0290 7 7 3.3574 -0.8340 1.4436 8 6 3.8456 -1.5242 2.6400 9 1 3.1733 -1.3245 3.4745 10 6 3.8964 -3.0302 2.3750 11 6 4.8402 -3.3104 1.2038 12 6 6.2430 -2.8054 1.5470 13 6 6.1921 -1.2993 1.8120 14 6 5.2485 -1.0191 2.9833 15 1 5.6118 -1.5326 3.8735 16 6 5.1982 0.4869 3.2486 17 7 6.5190 0.9500 3.6945 18 6 6.5087 2.3950 3.9587 19 6 7.8777 2.8324 4.4123 20 8 8.7737 2.0203 4.5066 21 7 8.1061 4.1259 4.7142 22 6 9.3513 4.5239 5.1273 23 1 10.1493 3.8008 5.2104 24 6 9.5870 5.8575 5.4380 25 7 10.7807 6.2390 5.8335 26 14 8.2073 7.1084 5.2921 27 1 7.4785 7.1943 6.5830 28 1 8.7779 8.4377 4.9563 29 1 7.2688 6.6876 4.2208 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7217 -1.2490 39 1 3.9877 -0.4654 0.8050 40 1 4.2593 -3.5437 3.2654 41 1 2.8970 -3.3900 2.1305 42 1 4.4768 -2.7969 0.3136 43 1 4.8767 -4.3834 1.0153 44 1 6.9152 -3.0046 0.7125 45 1 6.6062 -3.3189 2.4373 46 1 5.8289 -0.7858 0.9218 47 1 7.1915 -0.9397 2.0570 48 1 4.9205 1.0081 2.3325 49 1 4.4598 0.6948 4.0230 50 1 7.2321 0.7108 3.0217 51 1 6.2404 2.9291 3.0474 52 1 5.7794 2.6166 4.7379 53 1 7.3893 4.7752 4.6398 54 1 10.9451 7.1699 6.0507 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669980708.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:23 Heat of formation + Delta-G solvation = -124.676323 kcal Electronic energy + Delta-G solvation = -30855.672821 eV Core-core repulsion = 26825.022854 eV Total energy + Delta-G solvation = -4030.649968 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.66998 -40.33408 -39.62721 -36.74241 -36.51504 -35.85122 -34.61264 -33.75486 -32.31833 -30.86503 -28.70833 -28.21096 -27.99621 -26.40555 -24.75903 -24.49614 -23.12365 -22.01377 -21.30257 -20.60679 -20.21486 -19.99339 -17.88594 -17.81608 -17.18120 -16.91475 -16.66235 -16.31930 -16.21350 -15.58857 -15.55461 -15.42249 -15.04803 -14.90092 -14.74504 -14.60800 -14.44899 -14.27766 -14.12787 -13.76487 -13.37625 -13.30207 -13.17849 -13.07005 -13.04307 -12.93479 -12.79226 -12.69143 -12.62012 -12.45538 -12.40634 -11.98033 -11.92595 -11.88699 -11.83807 -11.51689 -11.43377 -11.28333 -10.94261 -10.61666 -10.44303 -10.24919 -9.98386 -9.30277 -8.41338 -6.02246 1.29905 1.35823 1.44374 1.69855 1.95264 2.22912 2.24185 2.70726 3.14999 3.37544 3.64097 3.71809 3.74977 3.83814 3.86527 3.95454 4.14388 4.18895 4.26277 4.29229 4.34202 4.43091 4.46529 4.53815 4.56020 4.62920 4.66546 4.71997 4.72520 4.80015 4.83254 4.88747 4.95635 4.96025 5.02308 5.03354 5.14227 5.21298 5.22897 5.25715 5.33172 5.34473 5.35374 5.42251 5.49100 5.52966 5.62830 5.90573 6.04748 6.41720 6.59441 6.59889 6.87977 7.30663 7.39647 7.96008 8.76287 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013218 B = 0.002491 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.878230 B =11236.636107 C =12694.903833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.085 4.085 3 C -0.140 4.140 4 C -0.137 4.137 5 C 0.519 3.481 6 O -0.585 6.585 7 N -0.706 5.706 8 C 0.159 3.841 9 H 0.068 0.932 10 C -0.125 4.125 11 C -0.110 4.110 12 C -0.116 4.116 13 C -0.116 4.116 14 C -0.082 4.082 15 H 0.084 0.916 16 C 0.070 3.930 17 N -0.685 5.685 18 C 0.061 3.939 19 C 0.449 3.551 20 O -0.613 6.613 21 N -0.591 5.591 22 C -0.328 4.328 23 H 0.055 0.945 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.965 3.035 27 H -0.259 1.259 28 H -0.275 1.275 29 H -0.230 1.230 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.408 0.592 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.072 0.928 47 H 0.061 0.939 48 H 0.045 0.955 49 H 0.068 0.932 50 H 0.346 0.654 51 H 0.078 0.922 52 H 0.109 0.891 53 H 0.389 0.611 54 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.427 -13.187 -17.899 31.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.088 4.088 3 C -0.197 4.197 4 C -0.195 4.195 5 C 0.307 3.693 6 O -0.464 6.464 7 N -0.359 5.359 8 C 0.054 3.946 9 H 0.086 0.914 10 C -0.163 4.163 11 C -0.147 4.147 12 C -0.153 4.153 13 C -0.154 4.154 14 C -0.102 4.102 15 H 0.103 0.897 16 C -0.058 4.058 17 N -0.318 5.318 18 C -0.071 4.071 19 C 0.237 3.763 20 O -0.498 6.498 21 N -0.233 5.233 22 C -0.457 4.457 23 H 0.074 0.926 24 C -0.214 4.214 25 N -0.575 5.575 26 Si 0.784 3.216 27 H -0.184 1.184 28 H -0.200 1.200 29 H -0.153 1.153 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.246 0.754 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.090 0.910 47 H 0.079 0.921 48 H 0.063 0.937 49 H 0.086 0.914 50 H 0.167 0.833 51 H 0.095 0.905 52 H 0.127 0.873 53 H 0.225 0.775 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -22.326 -14.074 -16.542 31.148 hybrid contribution 0.220 1.311 -0.454 1.405 sum -22.106 -12.763 -16.996 30.667 Atomic orbital electron populations 1.21652 0.92494 1.01982 1.02276 1.20856 0.97691 0.97107 0.93124 1.21890 1.01788 0.92733 1.03328 1.21872 1.01845 1.00108 0.95658 1.21090 0.82207 0.78554 0.87447 1.90673 1.56475 1.50703 1.48583 1.46047 1.06731 1.57853 1.25230 1.20792 0.94135 0.92016 0.87699 0.91358 1.21839 0.99624 0.94935 0.99928 1.21445 0.94421 1.01158 0.97684 1.21508 0.96976 0.94996 1.01862 1.21602 0.99211 0.97147 0.97390 1.21330 0.94000 0.94996 0.99845 0.89738 1.21993 0.89834 0.94958 0.99063 1.60069 1.06860 1.12677 1.52226 1.21620 0.93086 0.90135 1.02269 1.20976 0.91489 0.81875 0.81989 1.90543 1.48138 1.53086 1.57994 1.42041 1.10993 1.08570 1.61682 1.19006 0.88468 0.94700 1.43574 0.92637 1.26116 1.00132 0.99225 0.95923 1.69805 1.23547 1.18696 1.45447 0.85370 0.78187 0.77589 0.80405 1.18361 1.19977 1.15330 0.93576 0.89933 0.93320 0.91214 0.89642 0.93080 0.92797 0.89684 0.91066 0.75402 0.90840 0.92942 0.91534 0.91526 0.91027 0.92245 0.90957 0.92080 0.93662 0.91381 0.83339 0.90465 0.87345 0.77498 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 7.76 71.98 0.56 -1.21 16 2 C -0.08 -1.05 0.87 -52.93 -0.05 -1.09 16 3 C -0.14 -1.34 8.37 71.98 0.60 -0.74 16 4 C -0.14 -1.12 8.37 71.98 0.60 -0.51 16 5 C 0.52 9.54 6.45 87.66 0.56 10.10 16 6 O -0.58 -15.97 15.65 -3.02 -0.05 -16.02 16 7 N -0.71 -10.09 3.40 -442.52 -1.51 -11.59 16 8 C 0.16 2.70 2.23 44.99 0.10 2.80 16 9 H 0.07 1.48 7.58 -2.39 -0.02 1.47 16 10 C -0.12 -1.99 5.60 30.59 0.17 -1.82 16 11 C -0.11 -1.39 5.76 30.59 0.18 -1.21 16 12 C -0.12 -1.57 5.92 30.59 0.18 -1.38 16 13 C -0.12 -1.73 4.80 30.60 0.15 -1.58 16 14 C -0.08 -1.42 2.19 -10.80 -0.02 -1.44 16 15 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 16 C 0.07 1.38 4.91 86.30 0.42 1.81 16 17 N -0.68 -19.00 6.12 -517.95 -3.17 -22.17 16 18 C 0.06 1.82 6.17 85.56 0.53 2.35 16 19 C 0.45 19.99 7.82 87.66 0.69 20.67 16 20 O -0.61 -33.63 15.78 -3.07 -0.05 -33.68 16 21 N -0.59 -27.63 5.09 -306.98 -1.56 -29.19 16 22 C -0.33 -19.16 10.16 84.04 0.85 -18.30 16 23 H 0.06 3.86 7.39 -2.91 -0.02 3.84 16 24 C -0.02 -0.85 5.50 84.92 0.47 -0.38 16 25 N -0.93 -56.21 13.96 21.66 0.30 -55.91 16 26 Si 0.96 38.49 27.74 68.60 1.90 40.39 16 27 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 28 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 29 H -0.23 -7.64 6.52 99.48 0.65 -6.99 16 30 H 0.05 0.79 8.10 -2.39 -0.02 0.77 16 31 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.79 8.10 -2.39 -0.02 0.77 16 33 H 0.07 0.53 7.56 -2.39 -0.02 0.51 16 34 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.07 0.42 7.56 -2.39 -0.02 0.40 16 39 H 0.41 4.17 5.50 -92.71 -0.51 3.66 16 40 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 0.77 7.60 -2.39 -0.02 0.75 16 43 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 44 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.07 0.83 6.51 -2.39 -0.02 0.81 16 47 H 0.06 1.14 6.68 -2.39 -0.02 1.12 16 48 H 0.05 0.73 7.61 -2.39 -0.02 0.71 16 49 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.35 10.05 6.68 -89.69 -0.60 9.45 16 51 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 52 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 53 H 0.39 15.01 5.76 -92.70 -0.53 14.48 16 54 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -79.04 416.29 1.06 -77.99 By element: Atomic # 1 Polarization: 42.95 SS G_CDS: -0.81 Total: 42.14 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 5.99 Total: 8.05 kcal Atomic # 7 Polarization: -112.92 SS G_CDS: -5.94 Total: -118.86 kcal Atomic # 8 Polarization: -49.61 SS G_CDS: -0.10 Total: -49.70 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 1.90 Total: 40.39 kcal Total: -79.04 1.06 -77.99 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669980708.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.689 kcal (2) G-P(sol) polarization free energy of solvation -79.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds