Wall clock time and date at job start Tue Mar 31 2020 22:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34773 * 120.00015 * 2 1 4 4 O 1.21282 * 120.00472 * 179.72237 * 3 2 1 5 5 C 1.50703 * 119.99918 * 359.97438 * 3 2 1 6 6 N 1.46503 * 109.47249 * 179.97438 * 5 3 2 7 7 C 1.34779 * 120.00207 * 179.97438 * 6 5 3 8 8 O 1.21280 * 119.99564 * 0.02562 * 7 6 5 9 9 C 1.50695 * 120.00130 * 180.02562 * 7 6 5 10 10 C 1.53002 * 109.47057 * 180.02562 * 9 7 6 11 11 C 1.53007 * 109.47104 * 300.00301 * 9 7 6 12 12 C 1.53002 * 109.46921 * 60.00347 * 9 7 6 13 13 C 1.46503 * 120.00190 * 179.97438 * 2 1 3 14 14 C 1.52999 * 109.46930 * 125.87053 * 13 2 1 15 15 C 1.53005 * 109.47213 * 300.00280 * 14 13 2 16 16 C 1.52995 * 109.47048 * 300.00025 * 15 14 13 17 17 N 1.46500 * 109.47360 * 179.97438 * 16 15 14 18 18 C 1.36938 * 119.99578 * 84.99790 * 17 16 15 19 19 H 1.07994 * 120.00799 * 0.02562 * 18 17 16 20 20 C 1.38823 * 119.99544 * 180.02562 * 18 17 16 21 21 N 1.31611 * 119.99965 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99759 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47241 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.47103 * 119.99972 * 22 20 18 25 25 H 1.48498 * 109.47145 * 239.99570 * 22 20 18 26 26 C 1.52999 * 109.47134 * 59.99927 * 16 15 14 27 27 C 1.52995 * 109.47006 * 5.87227 * 13 2 1 28 28 H 1.09003 * 109.46322 * 84.08167 * 1 2 3 29 29 H 1.08999 * 109.46869 * 204.07500 * 1 2 3 30 30 H 1.08988 * 109.47053 * 324.08043 * 1 2 3 31 31 H 1.08996 * 109.47478 * 300.00157 * 5 3 2 32 32 H 1.09000 * 109.46914 * 60.00470 * 5 3 2 33 33 H 0.97001 * 119.99759 * 0.02562 * 6 5 3 34 34 H 1.08992 * 109.47053 * 60.00039 * 10 9 7 35 35 H 1.09000 * 109.46847 * 180.02562 * 10 9 7 36 36 H 1.08997 * 109.46657 * 299.99874 * 10 9 7 37 37 H 1.08998 * 109.46999 * 60.00152 * 11 9 7 38 38 H 1.09000 * 109.46784 * 179.97438 * 11 9 7 39 39 H 1.08993 * 109.46942 * 299.99775 * 11 9 7 40 40 H 1.08996 * 109.47000 * 60.00323 * 12 9 7 41 41 H 1.09003 * 109.46962 * 180.02562 * 12 9 7 42 42 H 1.08994 * 109.47006 * 299.99619 * 12 9 7 43 43 H 1.09003 * 109.47272 * 245.86870 * 13 2 1 44 44 H 1.09005 * 109.47397 * 60.00116 * 14 13 2 45 45 H 1.08998 * 109.47261 * 180.02562 * 14 13 2 46 46 H 1.09001 * 109.46875 * 180.02562 * 15 14 13 47 47 H 1.08998 * 109.47009 * 59.99844 * 15 14 13 48 48 H 1.09008 * 109.47479 * 300.00150 * 16 15 14 49 49 H 0.96996 * 120.00279 * 265.00176 * 17 16 15 50 50 H 0.97003 * 120.00284 * 179.97438 * 21 20 18 51 51 H 1.09005 * 109.47397 * 180.02562 * 26 16 15 52 52 H 1.08998 * 109.47261 * 59.99974 * 26 16 15 53 53 H 1.08998 * 109.47068 * 179.97438 * 27 13 2 54 54 H 1.09001 * 109.47257 * 300.00040 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 0.0051 5 6 1.3854 2.4723 -0.0006 6 7 2.3374 3.5858 0.0002 7 6 1.8881 4.8566 -0.0007 8 8 0.6957 5.0781 -0.0016 9 6 2.8673 6.0020 -0.0005 10 6 2.1023 7.3270 -0.0010 11 6 3.7462 5.9215 1.2494 12 6 3.7477 5.9204 -1.2492 13 6 2.1976 -1.2687 0.0006 14 6 3.1846 -1.2882 -1.1683 15 6 2.4189 -1.1419 -2.4849 16 6 1.4312 -2.3011 -2.6320 17 7 0.6976 -2.1607 -3.8923 18 6 1.2356 -2.6441 -5.0551 19 1 2.2004 -3.1292 -5.0431 20 6 0.5406 -2.5107 -6.2494 21 7 -0.6354 -1.9200 -6.2639 22 14 1.2741 -3.1707 -7.8355 23 1 2.5948 -3.7871 -7.5512 24 1 0.3652 -4.1932 -8.4133 25 1 1.4449 -2.0571 -8.8028 26 6 0.4442 -2.2816 -1.4631 27 6 1.2100 -2.4279 -0.1465 28 1 -0.3632 0.1060 -1.0223 29 1 -0.3633 -0.9383 0.4192 30 1 -0.3633 0.8322 0.6028 31 1 0.7590 2.5299 -0.8908 32 1 0.7584 2.5302 0.8892 33 1 3.2910 3.4086 0.0005 34 1 1.4754 7.3848 0.8887 35 1 2.8106 8.1555 -0.0013 36 1 1.4760 7.3845 -0.8912 37 1 4.2912 4.9775 1.2501 38 1 4.4547 6.7497 1.2492 39 1 3.1189 5.9796 2.1388 40 1 3.1217 5.9778 -2.1396 41 1 4.4564 6.7487 -1.2489 42 1 4.2928 4.9765 -1.2484 43 1 2.7431 -1.3729 0.9385 44 1 3.8882 -0.4623 -1.0636 45 1 3.7293 -2.2323 -1.1682 46 1 3.1220 -1.1563 -3.3177 47 1 1.8738 -0.1980 -2.4852 48 1 1.9762 -3.2452 -2.6316 49 1 -0.1691 -1.7254 -3.9031 50 1 -1.1209 -1.8264 -7.0985 51 1 -0.2592 -3.1077 -1.5675 52 1 -0.1008 -1.3377 -1.4634 53 1 1.7550 -3.3718 -0.1465 54 1 0.5068 -2.4140 0.6862 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674811451.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:54 Heat of formation + Delta-G solvation = -84.748020 kcal Electronic energy + Delta-G solvation = -31326.835616 eV Core-core repulsion = 27297.917069 eV Total energy + Delta-G solvation = -4028.918546 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.90711 -41.07014 -39.23060 -36.66894 -36.65055 -35.62766 -34.85496 -32.83001 -31.97939 -30.03824 -28.88950 -28.25224 -27.90600 -27.33696 -25.50043 -23.93783 -23.53125 -22.47414 -21.30257 -20.78219 -19.71362 -19.10560 -18.15599 -17.62528 -17.43203 -17.14891 -16.83303 -16.49143 -16.35381 -15.86327 -15.39656 -15.31405 -15.20345 -14.95753 -14.75607 -14.52171 -14.24674 -14.08072 -13.83681 -13.56207 -13.53983 -13.33260 -13.11754 -13.07687 -13.04718 -12.90782 -12.85986 -12.81721 -12.64706 -12.64219 -12.12323 -12.07366 -11.92848 -11.91665 -11.88133 -11.49667 -11.34298 -11.09099 -10.99625 -10.82316 -10.52209 -10.27408 -9.59843 -8.98478 -7.95576 -5.22489 1.44069 1.44438 1.44623 1.54284 1.56167 1.71003 2.31157 2.54352 3.31754 3.38276 3.57411 3.76309 3.80985 3.86271 3.90125 3.92475 4.14942 4.22557 4.25701 4.33419 4.34101 4.38562 4.41959 4.56574 4.61956 4.64159 4.69193 4.69951 4.71414 4.80958 4.85333 4.89990 4.92424 4.93634 4.99486 5.07512 5.12148 5.17404 5.23192 5.24120 5.26796 5.30305 5.30805 5.35683 5.46847 5.54165 5.65417 5.69910 6.28047 6.31673 6.41467 7.01613 7.12436 7.33524 8.12163 8.34280 9.28017 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011646 B = 0.002789 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.707730 B =10038.709130 C =11295.813868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.594 5.594 3 C 0.509 3.491 4 O -0.563 6.563 5 C 0.101 3.899 6 N -0.712 5.712 7 C 0.519 3.481 8 O -0.579 6.579 9 C -0.082 4.082 10 C -0.125 4.125 11 C -0.137 4.137 12 C -0.142 4.142 13 C 0.156 3.844 14 C -0.131 4.131 15 C -0.112 4.112 16 C 0.174 3.826 17 N -0.737 5.737 18 C -0.234 4.234 19 H 0.069 0.931 20 C -0.076 4.076 21 N -0.968 5.968 22 Si 0.966 3.034 23 H -0.269 1.269 24 H -0.292 1.292 25 H -0.296 1.296 26 C -0.138 4.138 27 C -0.111 4.111 28 H 0.056 0.944 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.415 0.585 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.057 0.943 40 H 0.048 0.952 41 H 0.092 0.908 42 H 0.062 0.938 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.023 0.977 47 H 0.035 0.965 48 H 0.035 0.965 49 H 0.372 0.628 50 H 0.250 0.750 51 H 0.059 0.941 52 H 0.083 0.917 53 H 0.088 0.912 54 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.292 11.713 21.243 25.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.326 5.326 3 C 0.297 3.703 4 O -0.443 6.443 5 C -0.026 4.026 6 N -0.367 5.367 7 C 0.307 3.693 8 O -0.458 6.458 9 C -0.085 4.085 10 C -0.183 4.183 11 C -0.195 4.195 12 C -0.199 4.199 13 C 0.054 3.946 14 C -0.169 4.169 15 C -0.152 4.152 16 C 0.066 3.934 17 N -0.376 5.376 18 C -0.366 4.366 19 H 0.087 0.913 20 C -0.269 4.269 21 N -0.619 5.619 22 Si 0.796 3.204 23 H -0.193 1.193 24 H -0.219 1.219 25 H -0.223 1.223 26 C -0.175 4.175 27 C -0.149 4.149 28 H 0.074 0.926 29 H 0.125 0.875 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.131 0.869 33 H 0.253 0.747 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.109 0.891 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.111 0.889 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.042 0.958 47 H 0.053 0.947 48 H 0.053 0.947 49 H 0.203 0.797 50 H 0.059 0.941 51 H 0.078 0.922 52 H 0.101 0.899 53 H 0.107 0.893 54 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.194 11.697 21.136 25.205 hybrid contribution 0.102 -0.381 -1.697 1.743 sum 7.296 11.316 19.439 23.646 Atomic orbital electron populations 1.22416 0.78083 1.05764 1.02306 1.47838 1.07986 1.05228 1.71560 1.20531 0.87725 0.85915 0.76093 1.90608 1.14700 1.87330 1.51635 1.21132 0.92381 0.84056 1.05007 1.45780 1.11296 1.04664 1.74955 1.21245 0.89629 0.84202 0.74222 1.90677 1.18570 1.85306 1.51292 1.20868 0.95186 0.93030 0.99452 1.21667 0.99909 0.94678 1.02052 1.21879 0.99131 1.03927 0.94534 1.21906 0.99241 1.03882 0.94872 1.21103 0.92806 0.82531 0.98163 1.21927 0.98401 1.02859 0.93750 1.21903 0.98025 0.99266 0.96047 1.20450 0.92385 0.95070 0.85496 1.42636 1.21552 1.70039 1.03387 1.19598 1.01199 1.28756 0.87051 0.91292 1.25482 0.97649 1.02902 1.00829 1.69802 1.15206 1.50659 1.26282 0.85168 0.77814 0.77227 0.80181 1.19315 1.21875 1.22304 1.22225 0.98141 1.03402 0.93761 1.21805 0.98247 0.97570 0.97283 0.92564 0.87470 0.89283 0.89142 0.86937 0.74667 0.92791 0.89396 0.93519 0.91722 0.89083 0.92341 0.93241 0.88903 0.91910 0.89481 0.91064 0.90707 0.95836 0.94662 0.94733 0.79677 0.94140 0.92213 0.89886 0.89338 0.88122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.95 8.06 127.77 1.03 1.98 16 2 N -0.59 -12.91 2.28 -822.60 -1.87 -14.78 16 3 C 0.51 12.49 7.28 87.66 0.64 13.13 16 4 O -0.56 -16.44 13.38 -3.04 -0.04 -16.48 16 5 C 0.10 2.24 4.78 85.63 0.41 2.65 16 6 N -0.71 -15.70 5.31 -466.78 -2.48 -18.18 16 7 C 0.52 12.24 6.48 87.66 0.57 12.81 16 8 O -0.58 -17.82 15.98 -3.03 -0.05 -17.87 16 9 C -0.08 -1.37 0.87 -52.93 -0.05 -1.41 16 10 C -0.13 -2.04 7.76 71.98 0.56 -1.48 16 11 C -0.14 -1.64 8.37 71.98 0.60 -1.04 16 12 C -0.14 -2.08 8.37 71.98 0.60 -1.48 16 13 C 0.16 3.47 3.05 44.99 0.14 3.61 16 14 C -0.13 -3.76 5.14 30.60 0.16 -3.60 16 15 C -0.11 -4.14 5.34 30.59 0.16 -3.98 16 16 C 0.17 6.68 2.77 44.99 0.12 6.80 16 17 N -0.74 -37.04 5.12 -322.94 -1.65 -38.69 16 18 C -0.23 -13.16 9.93 84.04 0.83 -12.32 16 19 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 20 C -0.08 -4.45 5.50 84.87 0.47 -3.98 16 21 N -0.97 -59.66 13.06 21.65 0.28 -59.38 16 22 Si 0.97 46.97 29.55 68.60 2.03 49.00 16 23 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 24 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 25 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 26 C -0.14 -3.88 4.84 30.60 0.15 -3.73 16 27 C -0.11 -2.18 4.90 30.59 0.15 -2.03 16 28 H 0.06 1.19 6.49 -2.39 -0.02 1.17 16 29 H 0.11 1.42 5.26 -2.39 -0.01 1.41 16 30 H 0.09 1.12 6.69 -2.39 -0.02 1.11 16 31 H 0.09 2.19 8.11 -2.39 -0.02 2.17 16 32 H 0.11 2.10 7.42 -2.39 -0.02 2.08 16 33 H 0.41 8.62 6.27 -92.71 -0.58 8.04 16 34 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 37 H 0.06 0.76 7.56 -2.39 -0.02 0.74 16 38 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.06 0.93 7.56 -2.39 -0.02 0.91 16 43 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.07 2.27 5.77 -2.38 -0.01 2.26 16 45 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.03 1.38 7.46 -2.39 -0.02 1.36 16 48 H 0.03 1.38 8.08 -2.38 -0.02 1.36 16 49 H 0.37 19.94 7.80 -92.71 -0.72 19.22 16 50 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 51 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 52 H 0.08 2.28 3.95 -2.39 -0.01 2.27 16 53 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 54 H 0.10 1.38 6.67 -2.39 -0.02 1.37 16 Total: -1.00 -74.18 408.31 2.35 -71.83 By element: Atomic # 1 Polarization: 39.05 SS G_CDS: -0.40 Total: 38.64 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 6.55 Total: 5.92 kcal Atomic # 7 Polarization: -125.31 SS G_CDS: -5.73 Total: -131.03 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -0.09 Total: -34.35 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -74.18 2.35 -71.83 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674811451.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.922 kcal (2) G-P(sol) polarization free energy of solvation -74.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds