Wall clock time and date at job start Tue Mar 31 2020 22:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47369 * 2 1 4 4 C 1.53002 * 109.47371 * 119.99539 * 2 1 3 5 5 H 1.09006 * 109.46849 * 60.00029 * 4 2 1 6 6 C 1.53002 * 109.47432 * 179.97438 * 4 2 1 7 7 C 1.52999 * 109.47338 * 186.66516 * 6 4 2 8 8 N 1.46495 * 109.47166 * 186.38290 * 7 6 4 9 9 C 1.46495 * 120.00154 * 276.12595 * 8 7 6 10 10 C 1.34782 * 119.99782 * 96.12501 * 8 7 6 11 11 O 1.21284 * 119.99786 * 184.94846 * 10 8 7 12 12 C 1.50697 * 119.99950 * 4.95291 * 10 8 7 13 13 H 1.09002 * 109.67459 * 42.48544 * 12 10 8 14 14 C 1.53345 * 109.67321 * 163.02330 * 12 10 8 15 15 C 1.52940 * 108.66472 * 187.27597 * 14 12 10 16 16 N 1.45754 * 110.47649 * 309.21835 * 15 14 12 17 17 C 1.46503 * 117.94418 * 199.08842 * 16 15 14 18 18 C 1.33359 * 124.10842 * 19.11093 * 16 15 14 19 19 O 1.21276 * 118.24515 * 177.78032 * 18 16 15 20 20 C 1.50175 * 123.50635 * 357.75133 * 18 16 15 21 21 N 1.46492 * 109.47410 * 300.00339 * 4 2 1 22 22 C 1.36938 * 120.00371 * 91.68330 * 21 4 2 23 23 H 1.08003 * 119.99649 * 0.02562 * 22 21 4 24 24 C 1.38811 * 120.00048 * 180.02562 * 22 21 4 25 25 N 1.31621 * 120.00323 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99760 * 180.02562 * 24 22 21 27 27 H 1.48510 * 109.47148 * 90.00137 * 26 24 22 28 28 H 1.48504 * 109.47376 * 210.00056 * 26 24 22 29 29 H 1.48496 * 109.47476 * 330.00155 * 26 24 22 30 30 H 1.08999 * 109.47228 * 300.00433 * 1 2 3 31 31 H 1.08998 * 109.47080 * 60.00450 * 1 2 3 32 32 H 1.09006 * 109.47111 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47637 * 239.99890 * 2 1 3 34 34 H 1.09000 * 109.47229 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.46693 * 300.00032 * 3 2 1 36 36 H 1.08999 * 109.47299 * 59.99610 * 3 2 1 37 37 H 1.08991 * 109.47223 * 306.67147 * 6 4 2 38 38 H 1.09006 * 109.46507 * 66.66856 * 6 4 2 39 39 H 1.09003 * 109.47011 * 306.39035 * 7 6 4 40 40 H 1.08998 * 109.46579 * 66.38474 * 7 6 4 41 41 H 1.09000 * 109.47113 * 95.19209 * 9 8 7 42 42 H 1.09001 * 109.46888 * 215.18867 * 9 8 7 43 43 H 1.09002 * 109.47293 * 335.18388 * 9 8 7 44 44 H 1.09001 * 109.60394 * 307.01353 * 14 12 10 45 45 H 1.09004 * 109.60714 * 67.50420 * 14 12 10 46 46 H 1.09000 * 109.29489 * 188.91414 * 15 14 12 47 47 H 1.08998 * 109.31817 * 69.53137 * 15 14 12 48 48 H 1.09009 * 109.46696 * 180.02562 * 17 16 15 49 49 H 1.08995 * 109.46979 * 300.01637 * 17 16 15 50 50 H 1.08993 * 109.47570 * 60.02294 * 17 16 15 51 51 H 1.08997 * 109.40388 * 257.45209 * 20 18 16 52 52 H 1.09000 * 109.32851 * 137.67220 * 20 18 16 53 53 H 0.97002 * 120.00147 * 271.69130 * 21 4 2 54 54 H 0.96992 * 119.99717 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6766 -1.7489 1.2493 6 6 3.5700 -0.7217 1.2490 7 6 4.0800 -1.5830 2.4061 8 7 5.5369 -1.4620 2.4998 9 6 6.3969 -2.2946 1.6552 10 6 6.0862 -0.5846 3.3630 11 8 7.2876 -0.4195 3.3774 12 6 5.2075 0.1910 4.3102 13 1 4.4461 -0.4681 4.7275 14 6 6.0599 0.7779 5.4417 15 6 5.1291 1.4022 6.4824 16 7 4.1804 2.3044 5.8419 17 6 3.5076 3.3006 6.6794 18 6 3.8860 2.2797 4.5414 19 8 3.0490 3.0537 4.1277 20 6 4.5359 1.3452 3.5619 21 7 1.5517 -0.0306 2.4454 22 6 0.3720 -0.4154 3.0247 23 1 -0.1981 -1.2284 2.5999 24 6 -0.0909 0.2393 4.1578 25 7 0.6037 1.2304 4.6751 26 14 -1.6997 -0.2862 4.9483 27 1 -1.4320 -1.3339 5.9663 28 1 -2.3371 0.8860 5.6002 29 1 -2.6090 -0.8287 3.9071 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8901 36 1 1.6766 1.9564 0.8899 37 1 3.9330 -1.1290 0.3054 38 1 3.9337 0.2990 1.3680 39 1 3.6266 -1.2449 3.3380 40 1 3.8125 -2.6247 2.2289 41 1 6.6721 -1.7398 0.7582 42 1 7.2977 -2.5632 2.2070 43 1 5.8607 -3.2004 1.3720 44 1 6.6476 -0.0144 5.9055 45 1 6.7249 1.5424 5.0399 46 1 5.7221 1.9589 7.2081 47 1 4.5832 0.6122 6.9980 48 1 2.8335 3.8967 6.0642 49 1 2.9369 2.7947 7.4582 50 1 4.2516 3.9513 7.1387 51 1 5.2853 1.8881 2.9860 52 1 3.7788 0.9469 2.8864 53 1 2.0639 0.6994 2.8271 54 1 0.2800 1.6881 5.4666 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675130197.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:23 Heat of formation + Delta-G solvation = -74.796106 kcal Electronic energy + Delta-G solvation = -33546.338297 eV Core-core repulsion = 29517.851298 eV Total energy + Delta-G solvation = -4028.486999 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.85252 -40.46491 -39.01236 -37.18720 -36.66454 -34.99200 -34.62490 -32.61596 -31.06641 -30.66875 -29.01885 -27.91928 -27.47233 -26.62416 -25.38857 -24.82797 -23.53337 -22.78015 -20.24937 -19.93988 -19.51691 -19.06349 -18.06336 -17.74272 -17.39904 -16.86763 -16.63055 -16.28061 -16.21597 -15.84119 -15.37825 -15.23560 -15.10795 -14.91262 -14.68812 -14.37657 -14.14510 -14.02115 -13.82297 -13.67176 -13.46536 -13.10384 -13.02146 -12.89569 -12.83483 -12.75192 -12.69963 -12.62995 -12.58160 -12.30960 -12.24006 -12.03148 -11.91052 -11.80509 -11.73949 -11.48766 -11.23851 -11.11050 -10.94553 -10.69994 -10.35693 -9.65485 -9.46144 -8.70674 -7.61996 -4.90334 1.49637 1.50062 1.53435 1.57877 1.95770 2.04220 2.28618 2.69358 3.33169 3.63934 3.64616 3.67984 3.84757 3.95129 4.04028 4.12831 4.22540 4.27935 4.31220 4.40955 4.45787 4.48844 4.51519 4.57450 4.61925 4.69367 4.70643 4.74724 4.76921 4.80968 4.86600 4.92969 4.96484 4.96685 5.01269 5.10019 5.13295 5.15158 5.21728 5.28722 5.32570 5.44006 5.49875 5.58532 5.66085 5.67097 5.76278 5.88294 6.32315 6.49932 6.67986 7.11099 7.49680 7.60577 8.38223 8.61915 9.52845 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.008343 B = 0.006207 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3355.281178 B = 4509.913531 C = 6407.888403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.107 4.107 3 C -0.133 4.133 4 C 0.174 3.826 5 H 0.057 0.943 6 C -0.139 4.139 7 C 0.110 3.890 8 N -0.608 5.608 9 C 0.083 3.917 10 C 0.524 3.476 11 O -0.569 6.569 12 C -0.103 4.103 13 H 0.097 0.903 14 C -0.106 4.106 15 C 0.116 3.884 16 N -0.610 5.610 17 C 0.082 3.918 18 C 0.521 3.479 19 O -0.563 6.563 20 C -0.126 4.126 21 N -0.723 5.723 22 C -0.222 4.222 23 H 0.069 0.931 24 C -0.061 4.061 25 N -0.921 5.921 26 Si 0.940 3.060 27 H -0.295 1.295 28 H -0.312 1.312 29 H -0.281 1.281 30 H 0.041 0.959 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.026 0.974 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.076 0.924 46 H 0.107 0.893 47 H 0.066 0.934 48 H 0.058 0.942 49 H 0.057 0.943 50 H 0.082 0.918 51 H 0.093 0.907 52 H 0.110 0.890 53 H 0.379 0.621 54 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.510 -5.569 -2.217 13.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.128 4.128 3 C -0.190 4.190 4 C 0.064 3.936 5 H 0.075 0.925 6 C -0.178 4.178 7 C -0.012 4.012 8 N -0.339 5.339 9 C -0.058 4.058 10 C 0.312 3.688 11 O -0.449 6.449 12 C -0.124 4.124 13 H 0.115 0.885 14 C -0.144 4.144 15 C -0.006 4.006 16 N -0.344 5.344 17 C -0.061 4.061 18 C 0.310 3.690 19 O -0.442 6.442 20 C -0.166 4.166 21 N -0.366 5.366 22 C -0.354 4.354 23 H 0.086 0.914 24 C -0.256 4.256 25 N -0.570 5.570 26 Si 0.773 3.227 27 H -0.223 1.223 28 H -0.240 1.240 29 H -0.206 1.206 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.045 0.955 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.115 0.885 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.116 0.884 44 H 0.121 0.879 45 H 0.095 0.905 46 H 0.125 0.875 47 H 0.084 0.916 48 H 0.077 0.923 49 H 0.076 0.924 50 H 0.101 0.899 51 H 0.111 0.889 52 H 0.128 0.872 53 H 0.214 0.786 54 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 12.561 -5.220 -2.407 13.813 hybrid contribution -1.462 0.336 0.771 1.687 sum 11.098 -4.884 -1.636 12.235 Atomic orbital electron populations 1.21670 0.96300 1.00598 1.00443 1.21679 0.95619 0.96307 0.99179 1.21678 1.00122 0.97050 1.00163 1.20466 0.91371 0.95264 0.86465 0.92489 1.22375 0.96091 0.99911 0.99395 1.21779 0.77570 1.01718 1.00162 1.47997 1.07826 1.38956 1.39123 1.21787 0.94929 0.94971 0.94158 1.20533 0.87984 0.79413 0.80851 1.90641 1.16148 1.66594 1.71513 1.21354 0.98153 0.96678 0.96212 0.88488 1.21685 0.96837 1.01493 0.94360 1.21536 0.90412 0.93217 0.95473 1.47114 1.43604 1.36062 1.07622 1.21605 0.97961 0.92081 0.94423 1.19898 0.81628 0.84074 0.83432 1.90728 1.33090 1.42663 1.77674 1.21820 1.01267 0.95375 0.98127 1.42691 1.24294 1.40282 1.29327 1.19275 0.98682 1.12101 1.05386 0.91358 1.25232 1.00446 0.99594 1.00330 1.69882 1.38959 1.24721 1.23483 0.85661 0.82559 0.75915 0.78570 1.22294 1.24030 1.20635 0.93946 0.93667 0.93565 0.90306 0.92801 0.93168 0.95481 0.89153 0.92703 0.90730 0.88476 0.92379 0.91671 0.88398 0.87916 0.90536 0.87528 0.91609 0.92334 0.92445 0.89945 0.88905 0.87182 0.78575 0.95440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 8.61 71.98 0.62 -4.06 16 2 C -0.11 -3.41 2.80 -10.80 -0.03 -3.44 16 3 C -0.13 -4.52 8.69 71.98 0.63 -3.89 16 4 C 0.17 5.84 2.15 44.99 0.10 5.94 16 5 H 0.06 1.89 8.02 -2.38 -0.02 1.87 16 6 C -0.14 -3.78 4.00 30.59 0.12 -3.66 16 7 C 0.11 2.86 4.92 86.38 0.42 3.28 16 8 N -0.61 -15.05 2.87 -846.77 -2.43 -17.49 16 9 C 0.08 1.58 10.37 127.77 1.33 2.91 16 10 C 0.52 15.12 6.85 87.66 0.60 15.73 16 11 O -0.57 -18.74 15.88 -3.04 -0.05 -18.78 16 12 C -0.10 -2.97 1.73 -11.40 -0.02 -2.99 16 13 H 0.10 3.02 6.64 -2.39 -0.02 3.00 16 14 C -0.11 -2.55 4.64 30.69 0.14 -2.41 16 15 C 0.12 2.75 6.40 86.50 0.55 3.30 16 16 N -0.61 -20.00 3.21 -851.57 -2.73 -22.73 16 17 C 0.08 2.55 10.48 127.77 1.34 3.89 16 18 C 0.52 20.76 7.47 87.71 0.66 21.41 16 19 O -0.56 -27.93 15.95 -3.02 -0.05 -27.98 16 20 C -0.13 -4.32 4.80 29.71 0.14 -4.18 16 21 N -0.72 -31.73 3.50 -322.94 -1.13 -32.86 16 22 C -0.22 -11.12 7.89 84.03 0.66 -10.46 16 23 H 0.07 3.36 7.82 -2.91 -0.02 3.33 16 24 C -0.06 -3.32 5.50 84.86 0.47 -2.85 16 25 N -0.92 -52.93 13.06 21.65 0.28 -52.64 16 26 Si 0.94 45.37 29.55 68.60 2.03 47.40 16 27 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 28 H -0.31 -15.86 7.11 99.48 0.71 -15.15 16 29 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 30 H 0.04 1.85 6.38 -2.39 -0.02 1.84 16 31 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.05 1.66 6.59 -2.39 -0.02 1.65 16 35 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.03 1.14 7.53 -2.39 -0.02 1.12 16 37 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.05 1.69 4.49 -2.38 -0.01 1.68 16 39 H 0.07 2.39 5.04 -2.39 -0.01 2.38 16 40 H 0.10 2.11 7.96 -2.39 -0.02 2.10 16 41 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.06 1.32 7.66 -2.39 -0.02 1.30 16 43 H 0.10 1.33 7.90 -2.39 -0.02 1.31 16 44 H 0.10 2.13 8.14 -2.39 -0.02 2.12 16 45 H 0.08 1.90 8.12 -2.39 -0.02 1.88 16 46 H 0.11 1.84 8.10 -2.39 -0.02 1.82 16 47 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.06 2.25 6.59 -2.38 -0.02 2.24 16 49 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 51 H 0.09 3.03 8.09 -2.39 -0.02 3.01 16 52 H 0.11 4.13 2.01 -2.39 0.00 4.13 16 53 H 0.38 18.21 5.44 -92.71 -0.50 17.70 16 54 H 0.24 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -69.33 406.73 4.03 -65.30 By element: Atomic # 1 Polarization: 40.88 SS G_CDS: 0.39 Total: 41.27 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 7.73 Total: 18.52 kcal Atomic # 7 Polarization: -119.71 SS G_CDS: -6.02 Total: -125.72 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -0.10 Total: -46.77 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -69.33 4.03 -65.30 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675130197.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.497 kcal (2) G-P(sol) polarization free energy of solvation -69.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds