Wall clock time and date at job start Tue Mar 31 2020 22:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47563 * 305.00337 * 4 3 2 6 6 C 1.53001 * 109.47279 * 65.00040 * 4 3 2 7 7 C 1.50700 * 109.47798 * 185.00026 * 4 3 2 8 8 O 1.21284 * 119.99429 * 359.97438 * 7 4 3 9 9 N 1.34767 * 120.00754 * 180.02562 * 7 4 3 10 10 C 1.48149 * 127.83424 * 0.02562 * 9 7 4 11 11 C 1.54389 * 104.61755 * 219.58930 * 10 9 7 12 12 H 1.08993 * 110.34274 * 95.00733 * 11 10 9 13 13 N 1.46899 * 110.34344 * 217.26269 * 11 10 9 14 14 C 1.46896 * 111.00275 * 273.54608 * 13 11 10 15 15 C 1.50702 * 109.47242 * 179.97438 * 14 13 11 16 16 O 1.21285 * 120.00208 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99765 * 180.02562 * 15 14 13 18 18 C 1.37101 * 120.00213 * 179.97438 * 17 15 14 19 19 H 1.08008 * 119.99437 * 0.02562 * 18 17 15 20 20 C 1.38947 * 120.00595 * 179.97438 * 18 17 15 21 21 N 1.31411 * 119.99528 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00356 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.47069 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47378 * 120.00188 * 22 20 18 25 25 H 1.48500 * 109.47552 * 240.00435 * 22 20 18 26 26 C 1.54284 * 104.96132 * 336.13138 * 11 10 9 27 27 C 1.53000 * 110.34269 * 118.87014 * 26 11 10 28 28 C 1.53000 * 110.34811 * 241.02576 * 26 11 10 29 29 C 1.48144 * 127.84383 * 179.70880 * 9 7 4 30 30 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 32 32 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 34 34 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 35 35 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 36 36 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 37 37 H 1.08993 * 109.47832 * 180.02562 * 6 4 3 38 38 H 1.09001 * 109.46924 * 300.00271 * 6 4 3 39 39 H 1.09000 * 109.47104 * 59.99686 * 6 4 3 40 40 H 1.08996 * 110.41014 * 338.37063 * 10 9 7 41 41 H 1.09002 * 110.40655 * 100.80600 * 10 9 7 42 42 H 1.00904 * 111.00073 * 37.49754 * 13 11 10 43 43 H 1.09000 * 109.47302 * 300.00077 * 14 13 11 44 44 H 1.09001 * 109.47216 * 59.99579 * 14 13 11 45 45 H 0.97006 * 120.00555 * 0.02562 * 17 15 14 46 46 H 0.97005 * 120.00059 * 179.97438 * 21 20 18 47 47 H 1.09003 * 109.46977 * 60.00184 * 27 26 11 48 48 H 1.09000 * 109.47096 * 180.02562 * 27 26 11 49 49 H 1.08997 * 109.47396 * 300.00413 * 27 26 11 50 50 H 1.09003 * 109.46978 * 59.99627 * 28 26 11 51 51 H 1.08992 * 109.47466 * 179.97438 * 28 26 11 52 52 H 1.09003 * 109.47096 * 300.00272 * 28 26 11 53 53 H 1.09007 * 110.40700 * 259.19891 * 29 9 7 54 54 H 1.09000 * 110.40784 * 21.62261 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0794 0.8332 -1.3083 7 6 4.0724 2.8580 0.1232 8 8 3.2842 3.7763 0.2035 9 7 5.3973 3.1034 0.1436 10 6 6.5046 2.1231 0.0561 11 6 7.5615 2.6388 1.0563 12 1 7.4436 2.1445 2.0206 13 7 8.9146 2.4164 0.5294 14 6 9.3983 1.0721 0.8711 15 6 10.7857 0.8809 0.3147 16 8 11.3193 1.7765 -0.3051 17 7 11.4336 -0.2854 0.5058 18 6 12.6956 -0.4596 -0.0009 19 1 13.1707 0.3380 -0.5528 20 6 13.3638 -1.6618 0.1966 21 7 12.7859 -2.6320 0.8685 22 14 15.0835 -1.8988 -0.4931 23 1 15.5063 -0.6651 -1.2036 24 1 16.0283 -2.1780 0.6179 25 1 15.0834 -3.0413 -1.4417 26 6 7.2797 4.1497 1.1900 27 6 6.9197 4.4978 2.6357 28 6 8.4955 4.9599 0.7358 29 6 6.0771 4.4152 0.2522 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 5.1694 0.8328 -1.3087 38 1 3.7161 -0.1906 -1.3979 39 1 3.7157 1.4227 -2.1499 40 1 6.1581 1.1314 0.3469 41 1 6.9150 2.1024 -0.9535 42 1 8.9440 2.5686 -0.4676 43 1 9.4224 0.9592 1.9550 44 1 8.7294 0.3255 0.4429 45 1 11.0068 -1.0019 1.0012 46 1 13.2521 -3.4714 1.0061 47 1 7.7492 4.2317 3.2908 48 1 6.7232 5.5671 2.7138 49 1 6.0299 3.9426 2.9324 50 1 8.7163 4.7303 -0.3067 51 1 8.2811 6.0239 0.8355 52 1 9.3553 4.7026 1.3544 53 1 6.4217 4.7470 -0.7273 54 1 5.4076 5.1550 0.6911 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676990264.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:14 Heat of formation + Delta-G solvation = -106.275830 kcal Electronic energy + Delta-G solvation = -30598.802853 eV Core-core repulsion = 26568.950791 eV Total energy + Delta-G solvation = -4029.852062 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.62363 -40.19184 -39.49547 -36.93133 -36.12838 -35.44325 -34.66104 -33.20900 -32.72880 -30.03650 -28.33547 -27.82524 -27.64591 -27.26977 -25.70953 -24.50283 -23.29676 -21.71247 -21.11309 -20.21165 -19.92963 -19.71861 -18.09652 -17.72087 -17.12301 -16.93326 -16.48454 -16.40162 -16.24432 -15.82749 -15.45093 -15.25498 -15.14284 -14.92947 -14.76402 -14.29499 -14.15088 -14.00355 -13.91219 -13.68462 -13.48993 -13.26524 -13.18441 -13.10985 -13.00198 -12.80659 -12.74082 -12.71136 -12.50694 -12.36806 -12.19031 -12.10496 -11.86843 -11.80919 -11.77810 -11.60093 -11.48681 -11.47633 -11.42256 -10.77587 -10.28556 -9.97097 -9.85220 -9.22837 -8.43963 -5.91589 1.38196 1.43991 1.55919 1.57218 1.86823 2.11041 2.31180 2.91946 3.24200 3.31522 3.47466 3.64489 3.75778 3.78494 3.88724 3.94871 4.09876 4.22072 4.26580 4.31497 4.34768 4.37780 4.42228 4.49092 4.56720 4.60957 4.67999 4.70070 4.75714 4.78147 4.81800 4.87602 4.88543 4.90939 4.98430 5.00571 5.09508 5.11694 5.15894 5.19894 5.29048 5.34372 5.39306 5.41479 5.44787 5.49770 5.64646 5.93956 6.14734 6.39226 6.51065 6.64304 7.08116 7.17093 7.61833 8.17165 8.73551 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012158 B = 0.002422 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.551975 B =11560.139878 C =13325.918160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.095 4.095 4 C -0.102 4.102 5 H 0.114 0.886 6 C -0.148 4.148 7 C 0.533 3.467 8 O -0.586 6.586 9 N -0.615 5.615 10 C 0.072 3.928 11 C 0.086 3.914 12 H 0.101 0.899 13 N -0.658 5.658 14 C 0.063 3.937 15 C 0.440 3.560 16 O -0.622 6.622 17 N -0.575 5.575 18 C -0.329 4.329 19 H 0.078 0.922 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.989 3.011 23 H -0.274 1.274 24 H -0.273 1.273 25 H -0.272 1.272 26 C -0.062 4.062 27 C -0.129 4.129 28 C -0.112 4.112 29 C 0.110 3.890 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.050 0.950 40 H 0.103 0.897 41 H 0.078 0.922 42 H 0.347 0.653 43 H 0.104 0.896 44 H 0.073 0.927 45 H 0.397 0.603 46 H 0.276 0.724 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.049 0.951 50 H 0.049 0.951 51 H 0.054 0.946 52 H 0.056 0.944 53 H 0.074 0.926 54 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.687 4.492 1.090 21.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.133 4.133 4 C -0.123 4.123 5 H 0.131 0.869 6 C -0.205 4.205 7 C 0.324 3.676 8 O -0.466 6.466 9 N -0.348 5.348 10 C -0.053 4.053 11 C -0.026 4.026 12 H 0.119 0.881 13 N -0.290 5.290 14 C -0.069 4.069 15 C 0.227 3.773 16 O -0.508 6.508 17 N -0.213 5.213 18 C -0.459 4.459 19 H 0.096 0.904 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.813 3.187 23 H -0.199 1.199 24 H -0.199 1.199 25 H -0.197 1.197 26 C -0.064 4.064 27 C -0.187 4.187 28 C -0.170 4.170 29 C -0.013 4.013 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.070 0.930 40 H 0.121 0.879 41 H 0.096 0.904 42 H 0.168 0.832 43 H 0.122 0.878 44 H 0.091 0.909 45 H 0.231 0.769 46 H 0.086 0.914 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.069 0.931 50 H 0.068 0.932 51 H 0.073 0.927 52 H 0.075 0.925 53 H 0.092 0.908 54 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.469 5.652 1.294 21.274 hybrid contribution 0.310 -0.877 -0.676 1.150 sum -20.159 4.775 0.618 20.726 Atomic orbital electron populations 1.21773 0.95608 1.02085 1.01655 1.21584 0.96169 0.95166 1.02996 1.21373 0.92142 0.97778 1.02029 1.21338 0.97659 0.91323 1.01985 0.86860 1.21953 1.01910 1.02120 0.94527 1.20948 0.79928 0.92263 0.74510 1.90672 1.55233 1.48225 1.52476 1.48924 1.04545 1.09548 1.71764 1.23490 0.87377 0.94062 1.00356 1.22652 0.85575 0.95849 0.98483 0.88106 1.60260 1.22009 1.26216 1.20536 1.21609 0.91789 0.91407 1.02097 1.20913 0.89574 0.82512 0.84269 1.90505 1.70382 1.43203 1.46732 1.41941 1.15340 1.14255 1.49718 1.19663 0.92932 1.00310 1.32954 0.90411 1.25971 1.03390 0.94696 0.97223 1.69668 1.39893 1.05551 1.41033 0.84926 0.77490 0.78160 0.78124 1.19874 1.19857 1.19687 1.21518 0.94401 0.94589 0.95874 1.21770 1.01071 1.01663 0.94151 1.21454 0.96357 0.97943 1.01238 1.22618 0.93093 0.85936 0.99635 0.93084 0.93010 0.91754 0.91146 0.90748 0.92745 0.92729 0.91381 0.89302 0.93046 0.87877 0.90383 0.83205 0.87757 0.90884 0.76949 0.91412 0.91959 0.91950 0.93150 0.93219 0.92697 0.92501 0.90796 0.90904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 71.98 0.71 -1.11 16 2 C -0.12 -1.47 5.69 30.59 0.17 -1.29 16 3 C -0.10 -1.59 4.03 30.59 0.12 -1.46 16 4 C -0.10 -1.64 2.06 -11.54 -0.02 -1.66 16 5 H 0.11 1.45 7.95 -2.39 -0.02 1.43 16 6 C -0.15 -1.97 8.70 71.98 0.63 -1.35 16 7 C 0.53 12.19 7.27 87.66 0.64 12.83 16 8 O -0.59 -18.10 16.19 -3.04 -0.05 -18.15 16 9 N -0.62 -12.35 3.30 -807.15 -2.67 -15.02 16 10 C 0.07 1.20 4.84 86.53 0.42 1.62 16 11 C 0.09 1.66 2.99 45.82 0.14 1.80 16 12 H 0.10 1.83 7.44 -2.39 -0.02 1.82 16 13 N -0.66 -17.11 4.21 -490.91 -2.07 -19.18 16 14 C 0.06 1.83 6.01 85.56 0.51 2.34 16 15 C 0.44 19.24 7.82 87.66 0.69 19.93 16 16 O -0.62 -32.34 15.78 -3.05 -0.05 -32.38 16 17 N -0.57 -27.84 5.29 -306.98 -1.62 -29.46 16 18 C -0.33 -18.03 9.68 84.04 0.81 -17.22 16 19 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16 20 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 21 N -0.92 -48.20 13.05 21.66 0.28 -47.92 16 22 Si 0.99 41.98 29.55 68.60 2.03 44.01 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 26 C -0.06 -1.21 1.03 -51.13 -0.05 -1.26 16 27 C -0.13 -2.35 8.26 71.98 0.59 -1.75 16 28 C -0.11 -2.44 7.45 71.98 0.54 -1.90 16 29 C 0.11 2.25 6.16 86.68 0.53 2.78 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 34 H 0.07 0.77 6.56 -2.39 -0.02 0.76 16 35 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.05 1.07 7.96 -2.39 -0.02 1.05 16 37 H 0.07 0.88 5.34 -2.39 -0.01 0.86 16 38 H 0.09 0.89 6.56 -2.39 -0.02 0.88 16 39 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.10 1.34 6.56 -2.39 -0.02 1.33 16 41 H 0.08 1.33 7.47 -2.39 -0.02 1.31 16 42 H 0.35 9.66 7.32 -89.69 -0.66 9.00 16 43 H 0.10 2.74 8.08 -2.39 -0.02 2.72 16 44 H 0.07 1.73 8.11 -2.39 -0.02 1.72 16 45 H 0.40 18.14 7.90 -92.70 -0.73 17.41 16 46 H 0.28 13.57 8.31 -92.70 -0.77 12.80 16 47 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.05 1.15 7.43 -2.39 -0.02 1.14 16 51 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 52 H 0.06 1.48 7.84 -2.39 -0.02 1.46 16 53 H 0.07 1.49 7.85 -2.38 -0.02 1.47 16 54 H 0.07 1.65 7.61 -2.39 -0.02 1.63 16 Total: -1.00 -68.37 420.96 2.26 -66.11 By element: Atomic # 1 Polarization: 40.42 SS G_CDS: -0.50 Total: 39.92 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 6.90 Total: 12.08 kcal Atomic # 7 Polarization: -105.51 SS G_CDS: -6.07 Total: -111.58 kcal Atomic # 8 Polarization: -50.44 SS G_CDS: -0.10 Total: -50.53 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -68.37 2.26 -66.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676990264.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.164 kcal (2) G-P(sol) polarization free energy of solvation -68.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds