Wall clock time and date at job start Tue Mar 31 2020 22:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46952 * 2 1 4 4 C 1.53002 * 109.47005 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47501 * 305.00320 * 4 3 2 6 6 C 1.53007 * 109.46893 * 65.00233 * 4 3 2 7 7 C 1.50697 * 109.47145 * 184.99943 * 4 3 2 8 8 O 1.21284 * 119.99975 * 327.77618 * 7 4 3 9 9 N 1.34773 * 120.00060 * 147.77428 * 7 4 3 10 10 C 1.48151 * 127.83900 * 4.67488 * 9 7 4 11 11 C 1.54782 * 104.41998 * 140.36516 * 10 9 7 12 12 H 1.08998 * 110.53014 * 265.22717 * 11 10 9 13 13 N 1.46900 * 110.28990 * 142.98908 * 11 10 9 14 14 C 1.46896 * 111.00270 * 89.54282 * 13 11 10 15 15 C 1.50695 * 109.47230 * 180.02562 * 14 13 11 16 16 O 1.21297 * 120.00430 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00032 * 180.02562 * 15 14 13 18 18 C 1.37102 * 120.00089 * 180.02562 * 17 15 14 19 19 H 1.08004 * 119.99755 * 359.97438 * 18 17 15 20 20 C 1.38954 * 120.00228 * 180.02562 * 18 17 15 21 21 N 1.31406 * 119.99869 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00024 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46935 * 89.99929 * 22 20 18 24 24 H 1.48500 * 109.46790 * 209.99592 * 22 20 18 25 25 H 1.48501 * 109.47084 * 329.99539 * 22 20 18 26 26 C 1.54285 * 104.91959 * 24.16817 * 11 10 9 27 27 C 1.53004 * 110.34162 * 240.93444 * 26 11 10 28 28 C 1.52999 * 110.43315 * 118.72361 * 26 11 10 29 29 C 1.48147 * 127.84092 * 184.99163 * 9 7 4 30 30 H 1.08999 * 109.47496 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47379 * 60.00305 * 1 2 3 32 32 H 1.09002 * 109.47109 * 300.00046 * 1 2 3 33 33 H 1.08997 * 109.46688 * 119.99959 * 2 1 3 34 34 H 1.09002 * 109.47109 * 239.99954 * 2 1 3 35 35 H 1.09003 * 109.47313 * 299.99971 * 3 2 1 36 36 H 1.09002 * 109.47251 * 60.00041 * 3 2 1 37 37 H 1.09003 * 109.46925 * 292.81706 * 6 4 3 38 38 H 1.09004 * 109.46730 * 52.80958 * 6 4 3 39 39 H 1.08996 * 109.46912 * 172.81321 * 6 4 3 40 40 H 1.08997 * 110.40839 * 259.20384 * 10 9 7 41 41 H 1.09005 * 110.40558 * 21.62906 * 10 9 7 42 42 H 1.00899 * 111.00165 * 213.50336 * 13 11 10 43 43 H 1.08996 * 109.46960 * 300.00564 * 14 13 11 44 44 H 1.09002 * 109.46777 * 60.00291 * 14 13 11 45 45 H 0.97001 * 120.00406 * 359.97438 * 17 15 14 46 46 H 0.97001 * 120.00540 * 180.02562 * 21 20 18 47 47 H 1.09004 * 109.47386 * 176.99234 * 27 26 11 48 48 H 1.09002 * 109.47328 * 296.98793 * 27 26 11 49 49 H 1.08998 * 109.47341 * 56.99175 * 27 26 11 50 50 H 1.08999 * 109.47364 * 302.95896 * 28 26 11 51 51 H 1.09003 * 109.47155 * 62.95489 * 28 26 11 52 52 H 1.08997 * 109.47465 * 182.95561 * 28 26 11 53 53 H 1.08998 * 110.40671 * 338.37574 * 29 9 7 54 54 H 1.09002 * 110.40649 * 100.80087 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8531 0.8426 6 6 4.0805 0.8327 -1.3065 7 6 4.0723 2.8579 0.1245 8 8 3.4368 3.7712 -0.3583 9 7 5.2275 3.1088 0.7716 10 6 6.1828 2.1288 1.3389 11 6 7.5771 2.7167 1.0131 12 1 7.9648 2.2908 0.0877 13 7 8.5084 2.4628 2.1205 14 6 9.1996 1.1789 1.9432 15 6 10.1437 0.9533 3.0960 16 8 10.2317 1.7805 3.9788 17 7 10.8903 -0.1677 3.1462 18 6 11.7487 -0.3732 4.1952 19 1 11.8270 0.3634 4.9811 20 6 12.5189 -1.5286 4.2466 21 7 12.4240 -2.4246 3.2901 22 14 13.6880 -1.8089 5.6763 23 1 12.9779 -2.5315 6.7621 24 1 14.8456 -2.6183 5.2178 25 1 14.1700 -0.4999 6.1856 26 6 7.3404 4.2323 0.8481 27 6 7.7215 4.6794 -0.5647 28 6 8.1451 5.0149 1.8877 29 6 5.8271 4.4273 1.0828 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 3.8259 -0.2268 -1.3370 38 1 3.6162 1.3423 -2.1508 39 1 5.1629 0.9481 -1.3628 40 1 6.0456 2.0444 2.4169 41 1 6.0582 1.1566 0.8618 42 1 9.1693 3.2190 2.2177 43 1 8.4665 0.3729 1.9113 44 1 9.7626 1.1952 1.0100 45 1 10.8197 -0.8295 2.4405 46 1 12.9613 -3.2314 3.3261 47 1 7.4990 5.7399 -0.6826 48 1 8.7867 4.5118 -0.7239 49 1 7.1503 4.1050 -1.2940 50 1 7.8727 4.6771 2.8876 51 1 9.2098 4.8468 1.7250 52 1 7.9263 6.0783 1.7914 53 1 5.4337 5.1914 0.4124 54 1 5.6351 4.6965 2.1215 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676990265.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:18 Heat of formation + Delta-G solvation = -104.466010 kcal Electronic energy + Delta-G solvation = -30532.552080 eV Core-core repulsion = 26502.778497 eV Total energy + Delta-G solvation = -4029.773583 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.58814 -40.22577 -39.54464 -36.90037 -36.15208 -35.52665 -34.50592 -33.21691 -32.77058 -30.01975 -28.60907 -27.90631 -27.60068 -27.44075 -25.76016 -24.43533 -23.10388 -21.73924 -21.10600 -20.27836 -19.84002 -19.59945 -18.22534 -17.67432 -17.09535 -16.89478 -16.62028 -16.35710 -16.24079 -15.98930 -15.50765 -15.45969 -15.17077 -14.88604 -14.74243 -14.36695 -14.21815 -14.04264 -13.67240 -13.63508 -13.49416 -13.36989 -13.21743 -13.09641 -12.93888 -12.83448 -12.79986 -12.71313 -12.50753 -12.38962 -12.18644 -12.11393 -11.90029 -11.89055 -11.80185 -11.72261 -11.51723 -11.47881 -11.43199 -10.73243 -10.29640 -9.98440 -9.81104 -9.31680 -8.44450 -5.92446 1.39470 1.43626 1.55510 1.55810 1.87890 2.09124 2.30868 2.93325 3.23552 3.26603 3.49893 3.57425 3.67056 3.78509 3.86234 3.96140 4.22326 4.24876 4.28159 4.31542 4.34463 4.36026 4.38164 4.52958 4.57190 4.59307 4.64650 4.69986 4.72184 4.74796 4.79891 4.85168 4.88881 4.91696 4.93445 4.99094 5.01542 5.05858 5.12117 5.18728 5.21740 5.27101 5.31527 5.41082 5.43406 5.44274 5.49139 5.92204 6.13161 6.40088 6.52400 6.63145 7.09429 7.15789 7.60179 8.15356 8.72854 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011829 B = 0.002410 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.499668 B =11615.038416 C =13333.719955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.097 4.097 4 C -0.104 4.104 5 H 0.105 0.895 6 C -0.137 4.137 7 C 0.535 3.465 8 O -0.585 6.585 9 N -0.620 5.620 10 C 0.110 3.890 11 C 0.083 3.917 12 H 0.070 0.930 13 N -0.670 5.670 14 C 0.062 3.938 15 C 0.439 3.561 16 O -0.622 6.622 17 N -0.574 5.574 18 C -0.331 4.331 19 H 0.079 0.921 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.990 3.010 23 H -0.272 1.272 24 H -0.272 1.272 25 H -0.273 1.273 26 C -0.073 4.073 27 C -0.133 4.133 28 C -0.137 4.137 29 C 0.114 3.886 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.354 0.646 43 H 0.107 0.893 44 H 0.067 0.933 45 H 0.397 0.603 46 H 0.277 0.723 47 H 0.067 0.933 48 H 0.063 0.937 49 H 0.050 0.950 50 H 0.062 0.938 51 H 0.058 0.942 52 H 0.072 0.928 53 H 0.075 0.925 54 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.869 5.609 -11.269 21.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.135 4.135 4 C -0.125 4.125 5 H 0.123 0.877 6 C -0.195 4.195 7 C 0.326 3.674 8 O -0.465 6.465 9 N -0.353 5.353 10 C -0.013 4.013 11 C -0.028 4.028 12 H 0.088 0.912 13 N -0.308 5.308 14 C -0.070 4.070 15 C 0.227 3.773 16 O -0.509 6.509 17 N -0.211 5.211 18 C -0.460 4.460 19 H 0.097 0.903 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.814 3.186 23 H -0.197 1.197 24 H -0.197 1.197 25 H -0.198 1.198 26 C -0.075 4.075 27 C -0.190 4.190 28 C -0.195 4.195 29 C -0.008 4.008 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.115 0.885 42 H 0.179 0.821 43 H 0.125 0.875 44 H 0.085 0.915 45 H 0.230 0.770 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.082 0.918 49 H 0.069 0.931 50 H 0.081 0.919 51 H 0.077 0.923 52 H 0.091 0.909 53 H 0.093 0.907 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.607 6.182 -10.611 21.467 hybrid contribution 1.310 -0.186 -0.160 1.333 sum -16.297 5.995 -10.771 20.434 Atomic orbital electron populations 1.21776 0.95542 1.02122 1.01679 1.21563 0.96188 0.95073 1.03028 1.21432 0.91982 0.98118 1.02016 1.21378 0.97739 0.91253 1.02137 0.87732 1.21761 1.01163 1.02174 0.94372 1.20912 0.78539 0.92169 0.75755 1.90659 1.57841 1.48563 1.49466 1.49028 1.21286 1.09272 1.55665 1.22647 0.86453 0.92602 0.99613 1.22568 0.92731 0.95030 0.92484 0.91229 1.60318 1.23077 1.03949 1.43420 1.21634 0.96071 0.94738 0.94597 1.20871 0.84182 0.82715 0.89540 1.90500 1.70946 1.46686 1.42719 1.41933 1.36828 1.19219 1.23144 1.19641 1.18455 1.05212 1.02734 0.90343 1.25991 0.99617 0.94916 1.00730 1.69660 1.42091 1.10407 1.33953 0.84971 0.77646 0.78224 0.77781 1.19742 1.19692 1.19815 1.21583 0.94496 0.94185 0.97207 1.21837 1.01545 1.01748 0.93875 1.21743 0.99237 1.00146 0.98388 1.22445 0.91508 0.85948 1.00928 0.91753 0.92864 0.93138 0.91300 0.90604 0.92180 0.93009 0.89098 0.92659 0.92128 0.90195 0.88461 0.82126 0.87473 0.91545 0.76953 0.91367 0.91436 0.91833 0.93074 0.91944 0.92303 0.90860 0.90689 0.90743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 71.98 0.71 -1.16 16 2 C -0.12 -1.53 5.69 30.59 0.17 -1.35 16 3 C -0.10 -1.67 4.22 30.59 0.13 -1.54 16 4 C -0.10 -1.78 2.12 -11.54 -0.02 -1.80 16 5 H 0.10 1.52 7.14 -2.39 -0.02 1.50 16 6 C -0.14 -1.93 8.76 71.98 0.63 -1.30 16 7 C 0.54 12.75 6.93 87.66 0.61 13.36 16 8 O -0.59 -18.31 16.57 -3.04 -0.05 -18.36 16 9 N -0.62 -13.39 3.31 -807.18 -2.67 -16.06 16 10 C 0.11 2.16 6.32 86.67 0.55 2.71 16 11 C 0.08 1.72 3.05 45.96 0.14 1.86 16 12 H 0.07 1.34 7.39 -2.39 -0.02 1.32 16 13 N -0.67 -18.43 5.28 -490.21 -2.59 -21.02 16 14 C 0.06 1.89 6.02 85.56 0.52 2.40 16 15 C 0.44 19.64 7.82 87.66 0.69 20.33 16 16 O -0.62 -32.80 15.78 -3.08 -0.05 -32.85 16 17 N -0.57 -28.16 5.29 -306.98 -1.62 -29.78 16 18 C -0.33 -18.25 9.68 84.04 0.81 -17.44 16 19 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 20 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 21 N -0.92 -48.44 13.05 21.66 0.28 -48.15 16 22 Si 0.99 42.07 29.55 68.60 2.03 44.10 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 C -0.07 -1.41 1.03 -51.28 -0.05 -1.46 16 27 C -0.13 -2.27 8.24 71.98 0.59 -1.68 16 28 C -0.14 -2.71 7.09 71.98 0.51 -2.20 16 29 C 0.11 2.42 6.15 86.53 0.53 2.95 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 0.81 6.73 -2.39 -0.02 0.80 16 35 H 0.06 1.19 8.01 -2.39 -0.02 1.17 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.09 0.92 6.93 -2.39 -0.02 0.90 16 38 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 40 H 0.08 1.77 8.07 -2.39 -0.02 1.75 16 41 H 0.10 1.53 7.19 -2.38 -0.02 1.52 16 42 H 0.35 10.40 5.27 -89.69 -0.47 9.93 16 43 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 44 H 0.07 1.77 8.07 -2.39 -0.02 1.75 16 45 H 0.40 18.40 7.90 -92.71 -0.73 17.67 16 46 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 47 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 48 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.06 1.45 7.66 -2.39 -0.02 1.43 16 51 H 0.06 1.21 6.89 -2.39 -0.02 1.19 16 52 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 53 H 0.07 1.69 7.57 -2.39 -0.02 1.68 16 54 H 0.07 1.58 7.86 -2.39 -0.02 1.56 16 Total: -1.00 -68.40 424.50 1.99 -66.42 By element: Atomic # 1 Polarization: 42.55 SS G_CDS: -0.32 Total: 42.22 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: 6.98 Total: 13.48 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -6.60 Total: -115.01 kcal Atomic # 8 Polarization: -51.11 SS G_CDS: -0.10 Total: -51.21 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -68.40 1.99 -66.42 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676990265.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.051 kcal (2) G-P(sol) polarization free energy of solvation -68.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds