Wall clock time and date at job start Tue Mar 31 2020 23:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 C 1.53004 * 109.47046 * 120.00038 * 2 1 3 5 5 N 1.46900 * 109.47010 * 201.44812 * 4 2 1 6 6 C 1.47009 * 111.00210 * 293.91387 * 5 4 2 7 7 C 1.53103 * 109.25855 * 177.60905 * 6 5 4 8 8 O 1.43010 * 109.25556 * 56.84918 * 7 6 5 9 9 C 1.43009 * 113.73979 * 301.32912 * 8 7 6 10 10 C 1.47016 * 110.99789 * 170.28028 * 5 4 2 11 11 C 1.50700 * 109.47465 * 239.99936 * 2 1 3 12 12 O 1.21277 * 120.00347 * 249.14938 * 11 2 1 13 13 N 1.34776 * 119.99664 * 69.14561 * 11 2 1 14 14 C 1.47020 * 125.65037 * 5.57352 * 13 11 2 15 15 C 1.54329 * 107.27357 * 178.90446 * 14 13 11 16 16 C 1.55155 * 102.94047 * 337.81139 * 15 14 13 17 17 H 1.09009 * 111.00277 * 277.38811 * 16 15 14 18 18 C 1.52999 * 111.00563 * 153.57818 * 16 15 14 19 19 N 1.46502 * 109.47188 * 66.45020 * 18 16 15 20 20 C 1.36931 * 119.99773 * 179.97438 * 19 18 16 21 21 H 1.08008 * 120.00256 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00170 * 180.02562 * 20 19 18 23 23 N 1.31621 * 119.99481 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00491 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47062 * 59.99583 * 24 22 20 26 26 H 1.48493 * 109.47278 * 179.97438 * 24 22 20 27 27 H 1.48509 * 109.46781 * 300.00160 * 24 22 20 28 28 C 1.47430 * 125.64777 * 185.27206 * 13 11 2 29 29 H 1.08996 * 109.47017 * 294.91942 * 1 2 3 30 30 H 1.08995 * 109.46684 * 54.92291 * 1 2 3 31 31 H 1.09004 * 109.46978 * 174.92157 * 1 2 3 32 32 H 1.09001 * 109.47213 * 199.02603 * 3 2 1 33 33 H 1.09000 * 109.47275 * 319.03202 * 3 2 1 34 34 H 1.09007 * 109.46723 * 79.03244 * 3 2 1 35 35 H 1.08996 * 109.47340 * 321.45268 * 4 2 1 36 36 H 1.09001 * 109.47070 * 81.44893 * 4 2 1 37 37 H 1.09001 * 109.50746 * 297.54714 * 6 5 4 38 38 H 1.09007 * 109.50819 * 57.67489 * 6 5 4 39 39 H 1.09004 * 109.50431 * 296.91121 * 7 6 5 40 40 H 1.08997 * 109.50665 * 176.78437 * 7 6 5 41 41 H 1.09004 * 109.50831 * 298.73635 * 9 8 7 42 42 H 1.08999 * 109.54190 * 178.63128 * 9 8 7 43 43 H 1.08998 * 109.50448 * 302.32559 * 10 5 4 44 44 H 1.08995 * 109.50616 * 62.41780 * 10 5 4 45 45 H 1.08999 * 109.88385 * 298.32550 * 14 13 11 46 46 H 1.09008 * 109.88057 * 59.33487 * 14 13 11 47 47 H 1.08994 * 110.72075 * 96.17070 * 15 14 13 48 48 H 1.08997 * 110.72040 * 219.27163 * 15 14 13 49 49 H 1.09002 * 109.47062 * 186.45675 * 18 16 15 50 50 H 1.08998 * 109.46693 * 306.44851 * 18 16 15 51 51 H 0.97001 * 119.99991 * 0.02562 * 19 18 16 52 52 H 0.97005 * 119.99696 * 180.02562 * 23 22 20 53 53 H 1.08998 * 110.36199 * 322.99810 * 28 13 11 54 54 H 1.08994 * 110.36747 * 85.32484 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.4186 -0.2987 1.5302 6 6 4.3334 -0.7472 0.4704 7 6 5.7447 -0.2357 0.7718 8 8 6.1469 -0.6957 2.0648 9 6 5.2784 -0.2766 3.1208 10 6 3.8625 -0.7885 2.8433 11 6 2.0324 -0.7104 -1.2304 12 8 2.5870 -1.7839 -1.1269 13 7 1.8653 -0.1527 -2.4459 14 6 1.3185 1.1870 -2.7062 15 6 1.3422 1.4028 -4.2341 16 6 2.4244 0.3980 -4.7101 17 1 3.4242 0.8169 -4.5950 18 6 2.1760 -0.0306 -6.1577 19 7 2.3646 1.1187 -7.0465 20 6 2.1950 0.9744 -8.3976 21 1 1.9219 0.0134 -8.8080 22 6 2.3742 2.0632 -9.2398 23 7 2.7074 3.2342 -8.7397 24 14 2.1422 1.8666 -11.0829 25 1 0.7533 1.4215 -11.3623 26 1 2.3891 3.1677 -11.7545 27 1 3.0993 0.8540 -11.5969 28 6 2.2064 -0.7825 -3.7345 29 1 -0.3633 0.4330 0.9320 30 1 -0.3632 0.5906 -0.8410 31 1 -0.3633 -1.0237 -0.0910 32 1 3.0771 1.4612 -0.3350 33 1 1.4296 2.0437 -0.6738 34 1 1.9768 1.8502 1.0090 35 1 1.4034 -0.4719 2.0981 36 1 2.0170 -1.7981 1.0819 37 1 4.3413 -1.8365 0.4333 38 1 4.0003 -0.3520 -0.4893 39 1 5.7479 0.8542 0.7558 40 1 6.4371 -0.6134 0.0195 41 1 5.2681 0.8121 3.1733 42 1 5.6334 -0.6832 4.0678 43 1 3.1856 -0.4235 3.6158 44 1 3.8621 -1.8784 2.8444 45 1 0.2938 1.2469 -2.3392 46 1 1.9332 1.9404 -2.2135 47 1 0.3737 1.1627 -4.6726 48 1 1.6299 2.4262 -4.4746 49 1 2.8785 -0.8188 -6.4289 50 1 1.1564 -0.4029 -6.2565 51 1 2.6102 1.9817 -6.6779 52 1 2.8323 3.9951 -9.3282 53 1 3.1194 -1.3703 -3.6395 54 1 1.3846 -1.4099 -4.0795 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690718294.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:57 Heat of formation + Delta-G solvation = -72.886679 kcal Electronic energy + Delta-G solvation = -31574.973209 eV Core-core repulsion = 27546.569008 eV Total energy + Delta-G solvation = -4028.404200 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.01905 -40.36902 -39.05853 -37.32664 -36.51844 -35.26901 -33.72844 -32.16512 -31.73627 -30.40832 -29.07568 -28.26463 -27.18972 -25.70245 -25.03249 -24.81686 -23.96552 -22.31588 -21.35795 -21.30279 -19.83359 -19.12597 -17.80765 -17.55388 -17.52862 -17.10098 -16.72206 -16.50641 -16.22285 -16.07649 -15.73008 -15.43557 -15.32764 -15.26085 -14.99014 -14.64428 -14.38646 -14.13887 -13.98992 -13.87784 -13.42178 -13.34354 -13.17091 -13.00933 -12.98818 -12.90691 -12.76451 -12.55261 -12.37707 -12.30848 -12.14890 -12.12808 -12.03832 -11.92158 -11.68056 -11.60390 -11.46411 -11.41605 -10.91618 -10.70153 -10.62852 -9.64469 -9.41813 -8.99064 -7.94505 -5.22785 1.48520 1.50850 1.56928 1.57309 1.93579 2.56745 2.71742 2.92878 3.28951 3.39223 3.53957 3.64982 3.77441 3.87934 3.91540 3.98942 4.05254 4.12665 4.17975 4.23517 4.27191 4.29310 4.36350 4.42037 4.52328 4.54558 4.58868 4.62139 4.67839 4.69818 4.72878 4.79173 4.81735 4.85532 4.88767 4.91847 4.97142 5.02132 5.03208 5.08923 5.10235 5.23974 5.24417 5.33288 5.40164 5.46605 5.50367 5.86185 5.96623 6.14787 6.27831 6.51789 7.09587 7.35095 8.09610 8.34488 9.28614 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019851 B = 0.002300 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.191125 B =12169.268344 C =12760.515735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.071 4.071 3 C -0.129 4.129 4 C 0.074 3.926 5 N -0.526 5.526 6 C 0.033 3.967 7 C 0.063 3.937 8 O -0.408 6.408 9 C 0.060 3.940 10 C 0.017 3.983 11 C 0.530 3.470 12 O -0.582 6.582 13 N -0.611 5.611 14 C 0.096 3.904 15 C -0.117 4.117 16 C -0.096 4.096 17 H 0.074 0.926 18 C 0.165 3.835 19 N -0.740 5.740 20 C -0.247 4.247 21 H 0.073 0.927 22 C -0.072 4.072 23 N -0.967 5.967 24 Si 0.971 3.029 25 H -0.278 1.278 26 H -0.295 1.295 27 H -0.281 1.281 28 C 0.119 3.881 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.026 0.974 37 H 0.020 0.980 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.116 0.884 43 H 0.112 0.888 44 H 0.027 0.973 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.074 0.926 48 H 0.080 0.920 49 H 0.016 0.984 50 H 0.026 0.974 51 H 0.377 0.623 52 H 0.252 0.748 53 H 0.064 0.936 54 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.561 -3.552 27.725 28.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.074 4.074 3 C -0.186 4.186 4 C -0.054 4.054 5 N -0.251 5.251 6 C -0.095 4.095 7 C -0.014 4.014 8 O -0.327 6.327 9 C -0.016 4.016 10 C -0.111 4.111 11 C 0.321 3.679 12 O -0.463 6.463 13 N -0.344 5.344 14 C -0.025 4.025 15 C -0.155 4.155 16 C -0.115 4.115 17 H 0.093 0.907 18 C 0.038 3.962 19 N -0.383 5.383 20 C -0.379 4.379 21 H 0.091 0.909 22 C -0.265 4.265 23 N -0.617 5.617 24 Si 0.800 3.200 25 H -0.204 1.204 26 H -0.221 1.221 27 H -0.207 1.207 28 C -0.004 4.004 29 H 0.114 0.886 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.128 0.872 36 H 0.044 0.956 37 H 0.038 0.962 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.112 0.888 41 H 0.086 0.914 42 H 0.133 0.867 43 H 0.130 0.870 44 H 0.045 0.955 45 H 0.112 0.888 46 H 0.111 0.889 47 H 0.092 0.908 48 H 0.099 0.901 49 H 0.034 0.966 50 H 0.044 0.956 51 H 0.209 0.791 52 H 0.061 0.939 53 H 0.083 0.917 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.134 -3.847 27.755 28.195 hybrid contribution 0.039 -0.812 -1.598 1.793 sum -3.095 -4.658 26.157 26.748 Atomic orbital electron populations 1.21901 0.90255 1.02554 1.04819 1.20826 0.98364 0.97652 0.90595 1.21963 1.00486 0.91979 1.04186 1.22110 0.89433 0.96901 0.96998 1.62407 1.01969 1.58670 1.02009 1.22779 0.93496 0.97452 0.95815 1.22732 0.94464 0.99247 0.84941 1.87949 1.51744 1.76607 1.16427 1.22859 0.88113 1.00100 0.90573 1.22858 0.98423 0.97851 0.91962 1.20881 0.77736 0.85079 0.84186 1.90700 1.44689 1.24475 1.86391 1.48528 1.62611 1.18136 1.05110 1.22657 1.00404 0.83473 0.95991 1.22596 0.99055 0.99953 0.93941 1.22282 0.99907 0.95888 0.93447 0.90712 1.20630 0.97569 0.89832 0.88148 1.42444 1.84063 1.08795 1.03021 1.19567 1.38279 0.95413 0.84628 0.90906 1.25517 1.03158 0.95545 1.02253 1.69792 1.55894 1.00686 1.35337 0.85247 0.78096 0.76270 0.80350 1.20361 1.22068 1.20691 1.22005 1.00632 0.95223 0.82550 0.88577 0.90729 0.93158 0.93671 0.90421 0.89785 0.87212 0.95568 0.96173 0.90828 0.91604 0.88839 0.91424 0.86651 0.86955 0.95450 0.88781 0.88906 0.90765 0.90148 0.96617 0.95591 0.79092 0.93941 0.91731 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.24 71.98 0.59 -1.13 16 2 C -0.07 -1.21 0.50 -52.93 -0.03 -1.24 16 3 C -0.13 -1.86 6.29 71.98 0.45 -1.41 16 4 C 0.07 1.29 4.23 86.30 0.37 1.66 16 5 N -0.53 -9.75 3.71 -895.21 -3.32 -13.07 16 6 C 0.03 0.80 3.71 86.32 0.32 1.12 16 7 C 0.06 1.38 7.01 72.02 0.50 1.88 16 8 O -0.41 -9.22 10.83 -148.98 -1.61 -10.83 16 9 C 0.06 0.91 7.01 72.01 0.50 1.42 16 10 C 0.02 0.26 5.65 86.31 0.49 0.75 16 11 C 0.53 13.24 4.60 87.66 0.40 13.65 16 12 O -0.58 -18.90 13.11 -3.02 -0.04 -18.94 16 13 N -0.61 -14.70 3.33 -812.21 -2.70 -17.40 16 14 C 0.10 1.87 4.97 86.73 0.43 2.30 16 15 C -0.12 -3.04 6.13 31.78 0.19 -2.84 16 16 C -0.10 -2.90 3.09 -9.48 -0.03 -2.93 16 17 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 18 C 0.17 6.38 5.71 86.38 0.49 6.87 16 19 N -0.74 -36.47 5.45 -343.45 -1.87 -38.34 16 20 C -0.25 -13.61 9.99 84.03 0.84 -12.77 16 21 H 0.07 3.88 7.83 -2.91 -0.02 3.85 16 22 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 23 N -0.97 -57.89 13.06 21.65 0.28 -57.61 16 24 Si 0.97 45.59 29.55 68.60 2.03 47.61 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 26 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 27 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 28 C 0.12 3.30 6.40 86.78 0.56 3.86 16 29 H 0.10 0.74 8.02 -2.39 -0.02 0.72 16 30 H 0.07 0.86 5.61 -2.39 -0.01 0.85 16 31 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.04 0.83 6.57 -2.39 -0.02 0.81 16 33 H 0.08 0.92 5.10 -2.39 -0.01 0.91 16 34 H 0.08 1.02 7.97 -2.38 -0.02 1.00 16 35 H 0.11 1.29 7.78 -2.39 -0.02 1.28 16 36 H 0.03 0.61 7.12 -2.39 -0.02 0.60 16 37 H 0.02 0.61 7.53 -2.39 -0.02 0.59 16 38 H 0.07 1.98 4.10 -2.38 -0.01 1.97 16 39 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 42 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.11 1.09 8.09 -2.39 -0.02 1.07 16 44 H 0.03 0.50 8.14 -2.39 -0.02 0.49 16 45 H 0.09 1.41 5.85 -2.39 -0.01 1.39 16 46 H 0.09 1.58 5.70 -2.38 -0.01 1.57 16 47 H 0.07 2.00 8.01 -2.39 -0.02 1.98 16 48 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.03 1.00 8.11 -2.39 -0.02 0.98 16 51 H 0.38 19.45 7.53 -92.71 -0.70 18.75 16 52 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 53 H 0.06 1.94 7.99 -2.39 -0.02 1.92 16 54 H 0.07 1.93 8.03 -2.39 -0.02 1.91 16 Total: -1.00 -69.81 397.92 -0.49 -70.30 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: 0.19 Total: 30.74 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 6.56 Total: 7.54 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -7.61 Total: -126.42 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -1.65 Total: -29.78 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -69.81 -0.49 -70.30 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690718294.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.586 kcal (2) G-P(sol) polarization free energy of solvation -69.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds