Wall clock time and date at job start Tue Mar 31 2020 22:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46707 * 2 1 4 4 C 1.53004 * 109.47013 * 185.09420 * 3 2 1 5 5 H 1.09004 * 109.46988 * 55.55929 * 4 3 2 6 6 C 1.52995 * 109.47419 * 295.56333 * 4 3 2 7 7 C 1.53003 * 109.46854 * 304.83037 * 6 4 3 8 8 C 1.50690 * 109.47285 * 175.55805 * 4 3 2 9 9 O 1.21288 * 120.00180 * 24.45200 * 8 4 3 10 10 N 1.34778 * 120.00239 * 204.44806 * 8 4 3 11 11 C 1.46497 * 119.99941 * 354.80133 * 10 8 4 12 12 C 1.46506 * 119.99986 * 174.79457 * 10 8 4 13 13 C 1.52998 * 109.47027 * 95.55458 * 12 10 8 14 14 H 1.09000 * 112.74961 * 76.22274 * 13 12 10 15 15 C 1.53514 * 113.47965 * 207.07556 * 13 12 10 16 16 C 1.53503 * 83.57766 * 140.78954 * 15 13 12 17 17 N 1.47479 * 87.93487 * 333.97760 * 16 15 13 18 18 C 1.46896 * 111.00223 * 138.70572 * 17 16 15 19 19 C 1.50702 * 109.47263 * 74.20710 * 18 17 16 20 20 O 1.21290 * 120.00137 * 359.97438 * 19 18 17 21 21 N 1.34773 * 119.99785 * 180.02562 * 19 18 17 22 22 C 1.37109 * 119.99967 * 179.97438 * 21 19 18 23 23 H 1.08003 * 119.99529 * 359.97438 * 22 21 19 24 24 C 1.38941 * 119.99950 * 180.02562 * 22 21 19 25 25 N 1.31412 * 120.00182 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99824 * 179.72606 * 24 22 21 27 27 H 1.48496 * 109.47225 * 180.27460 * 26 24 22 28 28 H 1.48499 * 109.46851 * 300.26943 * 26 24 22 29 29 H 1.48494 * 109.47209 * 60.26888 * 26 24 22 30 30 H 1.09002 * 109.46936 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47717 * 299.99842 * 1 2 3 32 32 H 1.09003 * 109.47029 * 60.00710 * 1 2 3 33 33 H 1.08996 * 109.47246 * 239.99967 * 2 1 3 34 34 H 1.09001 * 109.46654 * 119.99658 * 2 1 3 35 35 H 1.09005 * 109.47309 * 65.09937 * 3 2 1 36 36 H 1.08998 * 109.47129 * 305.09433 * 3 2 1 37 37 H 1.09004 * 109.47367 * 64.82452 * 6 4 3 38 38 H 1.09000 * 109.47492 * 184.83161 * 6 4 3 39 39 H 1.09002 * 109.47068 * 186.66402 * 7 6 4 40 40 H 1.08997 * 109.46824 * 306.66094 * 7 6 4 41 41 H 1.08999 * 109.47242 * 66.66252 * 7 6 4 42 42 H 1.09005 * 109.46704 * 269.99926 * 11 10 8 43 43 H 1.08998 * 109.47268 * 29.99677 * 11 10 8 44 44 H 1.08995 * 109.47433 * 150.00052 * 11 10 8 45 45 H 1.08996 * 109.47261 * 335.55115 * 12 10 8 46 46 H 1.08999 * 109.46896 * 215.55265 * 12 10 8 47 47 H 1.09005 * 114.16605 * 254.43920 * 15 13 12 48 48 H 1.09001 * 114.16659 * 26.94648 * 15 13 12 49 49 H 1.08997 * 113.47895 * 219.20846 * 16 15 13 50 50 H 1.08999 * 113.47671 * 88.73948 * 16 15 13 51 51 H 1.09000 * 109.47292 * 314.20549 * 18 17 16 52 52 H 1.09007 * 109.47004 * 194.20806 * 18 17 16 53 53 H 0.96998 * 120.00261 * 359.97438 * 21 19 18 54 54 H 0.96996 * 119.99826 * 359.73326 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5646 1.4445 -0.1281 5 1 3.8550 0.8891 -1.0199 6 6 4.1810 0.7845 1.1069 7 6 3.6771 1.4903 2.3674 8 6 4.0576 2.8642 -0.2378 9 8 3.3924 3.7737 0.2111 10 7 5.2379 3.1235 -0.8347 11 6 6.0943 2.0195 -1.2748 12 6 5.6642 4.5095 -1.0435 13 6 6.5795 4.9400 0.1044 14 1 7.5849 4.5278 0.0192 15 6 6.5574 6.4518 0.3702 16 6 6.6125 6.0195 1.8421 17 7 5.9782 4.7509 1.4378 18 6 6.5896 3.6112 2.1342 19 6 6.1299 3.5940 3.5693 20 8 5.3683 4.4475 3.9724 21 7 6.5659 2.6308 4.4050 22 6 6.1481 2.6154 5.7108 23 1 5.4699 3.3755 6.0697 24 6 6.5980 1.6227 6.5725 25 7 7.4236 0.6982 6.1359 26 14 6.0348 1.6062 8.3535 27 1 6.6579 0.4578 9.0592 28 1 6.4423 2.8727 9.0133 29 1 4.5565 1.4752 8.4040 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.7530 1.9294 0.9322 36 1 1.6039 1.9820 -0.8408 37 1 3.8931 -0.2663 1.1392 38 1 5.2671 0.8623 1.0565 39 1 4.2046 1.1001 3.2378 40 1 3.8601 2.5614 2.2817 41 1 2.6077 1.3123 2.4806 42 1 6.7714 1.7408 -0.4672 43 1 5.4749 1.1631 -1.5414 44 1 6.6740 2.3330 -2.1429 45 1 4.7890 5.1584 -1.0733 46 1 6.2048 4.5851 -1.9871 47 1 7.4476 6.9784 0.0261 48 1 5.6282 6.9424 0.0804 49 1 5.9885 6.6276 2.4970 50 1 7.6271 5.8962 2.2208 51 1 7.6751 3.7051 2.1015 52 1 6.2903 2.6838 1.6456 53 1 7.1753 1.9484 4.0828 54 1 7.7159 0.7066 5.2111 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691405521.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:45 Heat of formation + Delta-G solvation = -68.569979 kcal Electronic energy + Delta-G solvation = -32789.874632 eV Core-core repulsion = 28761.657618 eV Total energy + Delta-G solvation = -4028.217014 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.82706 -40.75163 -39.71195 -37.39832 -36.40856 -36.24338 -33.83430 -33.21137 -32.01867 -30.52235 -29.30760 -27.40449 -27.29103 -26.13154 -25.36312 -24.40871 -23.36334 -21.56783 -21.32828 -20.61052 -19.96052 -19.49039 -18.15045 -17.91334 -17.37898 -17.13774 -16.93405 -16.67786 -16.25174 -15.86602 -15.75024 -15.50107 -15.24237 -14.85206 -14.60224 -14.54226 -14.19964 -14.06590 -13.79965 -13.72225 -13.53627 -13.37668 -13.09540 -12.98354 -12.96089 -12.80860 -12.72858 -12.61363 -12.36296 -12.15587 -12.00559 -11.95082 -11.89248 -11.86508 -11.82602 -11.58522 -11.55330 -11.48302 -11.32397 -10.41818 -10.38898 -10.09553 -9.79486 -9.36489 -8.92172 -6.04797 1.49750 1.50626 1.78547 1.85040 2.01039 2.15351 2.38230 2.79844 3.15464 3.22766 3.52086 3.61626 3.72219 3.79301 3.89244 4.03431 4.11781 4.15324 4.21301 4.23795 4.24550 4.28245 4.31919 4.37734 4.41500 4.45117 4.55239 4.60244 4.67054 4.75016 4.76598 4.79061 4.88211 4.92106 4.93557 4.96755 4.99370 5.07972 5.09129 5.15860 5.21318 5.26392 5.37190 5.38748 5.42180 5.53411 5.60615 5.76776 5.95257 6.09393 6.56074 6.58771 6.77141 7.44267 7.45414 7.95736 8.55413 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.008604 B = 0.004642 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3253.454526 B = 6030.101827 C = 8265.173229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.100 4.100 4 C -0.100 4.100 5 H 0.125 0.875 6 C -0.098 4.098 7 C -0.145 4.145 8 C 0.512 3.488 9 O -0.561 6.561 10 N -0.616 5.616 11 C 0.067 3.933 12 C 0.136 3.864 13 C 0.009 3.991 14 H 0.096 0.904 15 C -0.113 4.113 16 C -0.003 4.003 17 N -0.448 5.448 18 C 0.030 3.970 19 C 0.454 3.546 20 O -0.613 6.613 21 N -0.584 5.584 22 C -0.402 4.402 23 H 0.064 0.936 24 C -0.038 4.038 25 N -0.914 5.914 26 Si 1.128 2.872 27 H -0.268 1.268 28 H -0.275 1.275 29 H -0.277 1.277 30 H 0.066 0.934 31 H 0.039 0.961 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.042 0.958 36 H 0.058 0.942 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.025 0.975 40 H 0.035 0.965 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.064 0.936 46 H 0.118 0.882 47 H 0.108 0.892 48 H 0.088 0.912 49 H 0.049 0.951 50 H 0.063 0.937 51 H 0.066 0.934 52 H 0.095 0.905 53 H 0.381 0.619 54 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.385 -2.041 -22.345 22.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.138 4.138 4 C -0.121 4.121 5 H 0.143 0.857 6 C -0.136 4.136 7 C -0.202 4.202 8 C 0.301 3.699 9 O -0.438 6.438 10 N -0.349 5.349 11 C -0.075 4.075 12 C 0.012 3.988 13 C -0.101 4.101 14 H 0.114 0.886 15 C -0.151 4.151 16 C -0.132 4.132 17 N -0.171 5.171 18 C -0.102 4.102 19 C 0.242 3.758 20 O -0.497 6.497 21 N -0.224 5.224 22 C -0.532 4.532 23 H 0.082 0.918 24 C -0.236 4.236 25 N -0.553 5.553 26 Si 0.949 3.051 27 H -0.193 1.193 28 H -0.201 1.201 29 H -0.203 1.203 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.082 0.918 39 H 0.045 0.955 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.107 0.893 44 H 0.118 0.882 45 H 0.082 0.918 46 H 0.135 0.865 47 H 0.127 0.873 48 H 0.106 0.894 49 H 0.068 0.932 50 H 0.081 0.919 51 H 0.084 0.916 52 H 0.113 0.887 53 H 0.215 0.785 54 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.829 -1.948 -20.301 20.476 hybrid contribution 0.977 0.788 -0.797 1.487 sum -0.852 -1.160 -21.098 21.147 Atomic orbital electron populations 1.21770 0.95671 1.02118 1.01447 1.21540 0.96109 0.95084 1.02850 1.21428 0.92866 0.97926 1.01545 1.21462 0.97143 0.92630 1.00850 0.85720 1.21394 0.99889 1.00290 0.91982 1.21717 1.00496 1.00288 0.97742 1.20970 0.81055 0.91498 0.76409 1.90719 1.57836 1.48629 1.46583 1.47819 1.19430 1.07554 1.60088 1.22128 0.94921 0.89654 1.00752 1.21504 0.97964 0.82297 0.96992 1.24033 0.98127 0.96663 0.91297 0.88620 1.23071 1.03971 0.94879 0.93169 1.23623 0.97516 0.93326 0.98744 1.68955 1.45251 0.99956 1.02898 1.22320 0.97578 0.98473 0.91836 1.20557 0.84074 0.82948 0.88264 1.90516 1.39697 1.40982 1.78545 1.41908 1.43717 1.26682 1.10062 1.20379 1.29965 1.15186 0.87639 0.91759 1.27647 0.95146 0.91370 1.09473 1.70969 1.32195 1.34320 1.17860 0.82694 0.76217 0.77108 0.69109 1.19290 1.20062 1.20298 0.91461 0.94153 0.92364 0.89812 0.92099 0.93924 0.92291 0.88701 0.91773 0.95532 0.94557 0.92974 0.93239 0.89268 0.88200 0.91765 0.86456 0.87324 0.89373 0.93204 0.91873 0.91589 0.88709 0.78549 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.91 71.98 0.71 -2.07 16 2 C -0.12 -2.24 5.55 30.59 0.17 -2.07 16 3 C -0.10 -2.48 3.80 30.60 0.12 -2.36 16 4 C -0.10 -2.31 1.77 -11.54 -0.02 -2.33 16 5 H 0.13 1.89 6.24 -2.38 -0.01 1.88 16 6 C -0.10 -2.58 5.27 30.59 0.16 -2.42 16 7 C -0.15 -5.56 9.11 71.98 0.66 -4.90 16 8 C 0.51 14.88 5.64 87.65 0.49 15.38 16 9 O -0.56 -22.43 14.78 -3.06 -0.05 -22.47 16 10 N -0.62 -13.26 2.68 -846.77 -2.27 -15.53 16 11 C 0.07 0.85 9.72 127.77 1.24 2.09 16 12 C 0.14 2.78 5.63 86.38 0.49 3.26 16 13 C 0.01 0.21 3.37 42.19 0.14 0.35 16 14 H 0.10 1.81 7.77 -2.39 -0.02 1.80 16 15 C -0.11 -2.56 8.00 30.94 0.25 -2.31 16 16 C 0.00 -0.09 6.72 83.57 0.56 0.47 16 17 N -0.45 -15.89 5.19 -906.75 -4.71 -20.60 16 18 C 0.03 1.12 5.31 85.56 0.45 1.57 16 19 C 0.45 23.01 7.21 87.66 0.63 23.64 16 20 O -0.61 -37.07 15.35 -3.06 -0.05 -37.12 16 21 N -0.58 -30.81 5.28 -306.99 -1.62 -32.43 16 22 C -0.40 -23.79 9.68 84.04 0.81 -22.98 16 23 H 0.06 4.17 7.16 -2.91 -0.02 4.14 16 24 C -0.04 -2.11 5.50 84.92 0.47 -1.64 16 25 N -0.91 -51.42 13.68 21.66 0.30 -51.12 16 26 Si 1.13 50.31 29.92 68.60 2.05 52.36 16 27 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 28 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 29 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.06 1.22 6.92 -2.39 -0.02 1.21 16 35 H 0.04 1.38 6.12 -2.38 -0.01 1.37 16 36 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.09 2.06 6.91 -2.39 -0.02 2.05 16 38 H 0.06 1.62 6.43 -2.39 -0.02 1.61 16 39 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.04 1.67 6.23 -2.39 -0.01 1.65 16 41 H 0.05 1.92 6.65 -2.39 -0.02 1.91 16 42 H 0.05 0.69 7.78 -2.38 -0.02 0.67 16 43 H 0.09 0.84 5.82 -2.39 -0.01 0.83 16 44 H 0.10 0.67 7.95 -2.39 -0.02 0.65 16 45 H 0.06 1.68 7.06 -2.39 -0.02 1.67 16 46 H 0.12 1.37 7.97 -2.39 -0.02 1.35 16 47 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 48 H 0.09 2.12 7.93 -2.39 -0.02 2.10 16 49 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.06 2.02 7.70 -2.39 -0.02 2.01 16 51 H 0.07 2.17 7.56 -2.39 -0.02 2.15 16 52 H 0.09 3.31 7.05 -2.38 -0.02 3.29 16 53 H 0.38 18.49 6.73 -92.71 -0.62 17.87 16 54 H 0.26 14.05 6.77 -92.71 -0.63 13.42 16 Total: -1.00 -83.88 416.29 1.40 -82.47 By element: Atomic # 1 Polarization: 40.36 SS G_CDS: 0.41 Total: 40.76 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 7.34 Total: 3.67 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -8.30 Total: -119.68 kcal Atomic # 8 Polarization: -59.50 SS G_CDS: -0.09 Total: -59.59 kcal Atomic # 14 Polarization: 50.31 SS G_CDS: 2.05 Total: 52.36 kcal Total: -83.88 1.40 -82.47 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691405521.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.904 kcal (2) G-P(sol) polarization free energy of solvation -83.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds