Wall clock time and date at job start Tue Mar 31 2020 22:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47093 * 2 1 4 4 C 1.53011 * 109.47040 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.46989 * 304.99799 * 4 3 2 6 6 C 1.52995 * 109.46877 * 64.99894 * 4 3 2 7 7 C 1.53001 * 109.47054 * 185.70764 * 6 4 3 8 8 C 1.50696 * 109.46960 * 184.99731 * 4 3 2 9 9 O 1.21285 * 120.00101 * 269.90355 * 8 4 3 10 10 N 1.34775 * 119.99832 * 89.90525 * 8 4 3 11 11 C 1.46495 * 120.00517 * 5.10295 * 10 8 4 12 12 C 1.46502 * 120.00096 * 185.10698 * 10 8 4 13 13 C 1.52998 * 109.47022 * 270.00093 * 12 10 8 14 14 H 1.09001 * 112.74775 * 75.76897 * 13 12 10 15 15 C 1.53513 * 113.47695 * 206.61604 * 13 12 10 16 16 C 1.53520 * 83.57680 * 140.78902 * 15 13 12 17 17 N 1.47477 * 113.47655 * 304.99720 * 13 12 10 18 18 C 1.46901 * 111.00256 * 106.53011 * 17 13 12 19 19 C 1.50698 * 109.47585 * 170.00167 * 18 17 13 20 20 O 1.21295 * 119.99634 * 359.97438 * 19 18 17 21 21 N 1.34776 * 120.00124 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99790 * 180.02562 * 21 19 18 23 23 H 1.08004 * 120.00446 * 0.02562 * 22 21 19 24 24 C 1.38950 * 119.99862 * 180.02562 * 22 21 19 25 25 N 1.31409 * 119.99888 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99897 * 180.27707 * 24 22 21 27 27 H 1.48504 * 109.47293 * 179.72455 * 26 24 22 28 28 H 1.48506 * 109.46927 * 299.71995 * 26 24 22 29 29 H 1.48496 * 109.47506 * 59.72043 * 26 24 22 30 30 H 1.09001 * 109.46829 * 300.00128 * 1 2 3 31 31 H 1.08997 * 109.46995 * 60.00218 * 1 2 3 32 32 H 1.09002 * 109.47060 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47674 * 239.99640 * 2 1 3 34 34 H 1.09004 * 109.47198 * 120.00073 * 2 1 3 35 35 H 1.09001 * 109.47387 * 60.00214 * 3 2 1 36 36 H 1.08997 * 109.47023 * 299.99765 * 3 2 1 37 37 H 1.08994 * 109.47252 * 305.70998 * 6 4 3 38 38 H 1.09002 * 109.47731 * 65.70973 * 6 4 3 39 39 H 1.09002 * 109.46651 * 62.42024 * 7 6 4 40 40 H 1.08997 * 109.47293 * 182.41775 * 7 6 4 41 41 H 1.08994 * 109.46927 * 302.42248 * 7 6 4 42 42 H 1.08997 * 109.47387 * 275.15158 * 11 10 8 43 43 H 1.09002 * 109.46528 * 35.14336 * 11 10 8 44 44 H 1.09000 * 109.47619 * 155.13881 * 11 10 8 45 45 H 1.08998 * 109.47815 * 149.99774 * 12 10 8 46 46 H 1.09005 * 109.47500 * 29.99629 * 12 10 8 47 47 H 1.08997 * 114.17447 * 254.43328 * 15 13 12 48 48 H 1.08995 * 114.17085 * 26.95335 * 15 13 12 49 49 H 1.08990 * 113.47703 * 219.20899 * 16 15 13 50 50 H 1.09005 * 113.47577 * 88.74242 * 16 15 13 51 51 H 1.09001 * 109.47068 * 49.99534 * 18 17 13 52 52 H 1.08998 * 109.46900 * 290.00558 * 18 17 13 53 53 H 0.96999 * 120.00104 * 0.02562 * 21 19 18 54 54 H 0.97002 * 119.99634 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0805 0.8327 -1.3064 7 6 5.6038 0.7016 -1.2473 8 6 4.0723 2.8579 0.1244 9 8 4.2765 3.5182 -0.8722 10 7 4.2946 3.3899 1.3426 11 6 4.1558 2.5592 2.5412 12 6 4.6749 4.7991 1.4682 13 6 6.1991 4.9224 1.4183 14 1 6.5985 4.8083 0.4105 15 6 6.7372 6.1573 2.1545 16 6 7.8491 5.1956 2.5969 17 7 6.8889 4.0900 2.4214 18 6 7.5319 2.9297 1.7904 19 6 8.4238 2.2429 2.7923 20 8 8.5152 2.6776 3.9210 21 7 9.1199 1.1457 2.4343 22 6 9.9308 0.5207 3.3460 23 1 10.0116 0.9072 4.3513 24 6 10.6488 -0.6102 2.9768 25 7 10.5502 -1.0808 1.7538 26 14 11.7478 -1.4663 4.2212 27 1 12.3938 -2.6424 3.5848 28 1 12.7929 -0.5217 4.6912 29 1 10.9307 -1.9155 5.3770 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.6362 -0.1528 -1.4454 38 1 3.8035 1.4771 -2.1407 39 1 5.8789 0.0231 -0.4398 40 1 5.9716 0.3072 -2.1945 41 1 6.0459 1.6811 -1.0653 42 1 3.1113 2.5416 2.8522 43 1 4.4862 1.5443 2.3200 44 1 4.7668 2.9735 3.3432 45 1 4.3096 5.1910 2.4174 46 1 4.2374 5.3681 0.6478 47 1 7.0752 6.9575 1.4960 48 1 6.0977 6.5078 2.9646 49 1 8.1614 5.3395 3.6312 50 1 8.6894 5.1552 1.9038 51 1 8.1284 3.2622 0.9408 52 1 6.7674 2.2329 1.4468 53 1 9.0470 0.7983 1.5316 54 1 11.0511 -1.8705 1.4962 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691405522.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:48 Heat of formation + Delta-G solvation = -72.195971 kcal Electronic energy + Delta-G solvation = -31805.052380 eV Core-core repulsion = 27776.678132 eV Total energy + Delta-G solvation = -4028.374249 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.81481 -40.83115 -39.56571 -37.22730 -36.41539 -35.94825 -33.91538 -33.34815 -32.15941 -30.71469 -29.44085 -27.54771 -27.39242 -25.61555 -25.37478 -24.41456 -23.10035 -21.72468 -21.13271 -20.68219 -19.93035 -19.69416 -18.27693 -17.73525 -17.23690 -17.13764 -16.79304 -16.46657 -16.10714 -15.99252 -15.63966 -15.51192 -15.20973 -14.94520 -14.72000 -14.39709 -14.08558 -14.08031 -13.87979 -13.74127 -13.57146 -13.54216 -13.27068 -12.96732 -12.93842 -12.83028 -12.60061 -12.58872 -12.46857 -12.40569 -12.21102 -12.15130 -11.96037 -11.94666 -11.73378 -11.62207 -11.58350 -11.48676 -11.27386 -10.55350 -10.42008 -10.04233 -9.91074 -9.45016 -8.47647 -5.97043 1.38110 1.40348 1.51281 1.65569 2.00436 2.06676 2.27168 2.82839 3.17381 3.30184 3.48575 3.58189 3.74894 3.82114 3.93083 4.10621 4.16169 4.22044 4.22396 4.23867 4.30855 4.32080 4.40683 4.41673 4.43918 4.47223 4.57984 4.65015 4.67403 4.73528 4.82384 4.84431 4.88046 4.89249 4.94661 4.98098 5.02689 5.08232 5.14185 5.22547 5.25347 5.30663 5.33190 5.34647 5.39281 5.41177 5.50949 5.60354 5.89331 6.05734 6.45914 6.56760 7.10108 7.22746 7.51902 8.07063 8.69437 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009342 B = 0.003614 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2996.482183 B = 7745.783862 C = 9675.053846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.096 4.096 4 C -0.109 4.109 5 H 0.098 0.902 6 C -0.103 4.103 7 C -0.154 4.154 8 C 0.515 3.485 9 O -0.578 6.578 10 N -0.605 5.605 11 C 0.080 3.920 12 C 0.137 3.863 13 C 0.009 3.991 14 H 0.064 0.936 15 C -0.112 4.112 16 C 0.001 3.999 17 N -0.443 5.443 18 C 0.034 3.966 19 C 0.445 3.555 20 O -0.611 6.611 21 N -0.573 5.573 22 C -0.333 4.333 23 H 0.080 0.920 24 C -0.011 4.011 25 N -0.920 5.920 26 Si 0.992 3.008 27 H -0.271 1.271 28 H -0.273 1.273 29 H -0.270 1.270 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.031 0.969 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.102 0.898 46 H 0.083 0.917 47 H 0.096 0.904 48 H 0.111 0.889 49 H 0.071 0.929 50 H 0.054 0.946 51 H 0.053 0.947 52 H 0.091 0.909 53 H 0.393 0.607 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.493 6.162 -4.842 20.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.134 4.134 4 C -0.130 4.130 5 H 0.116 0.884 6 C -0.140 4.140 7 C -0.211 4.211 8 C 0.305 3.695 9 O -0.458 6.458 10 N -0.335 5.335 11 C -0.062 4.062 12 C 0.014 3.986 13 C -0.102 4.102 14 H 0.082 0.918 15 C -0.150 4.150 16 C -0.128 4.128 17 N -0.166 5.166 18 C -0.098 4.098 19 C 0.233 3.767 20 O -0.497 6.497 21 N -0.210 5.210 22 C -0.463 4.463 23 H 0.098 0.902 24 C -0.211 4.211 25 N -0.560 5.560 26 Si 0.816 3.184 27 H -0.195 1.195 28 H -0.198 1.198 29 H -0.195 1.195 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.050 0.950 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.120 0.880 46 H 0.102 0.898 47 H 0.115 0.885 48 H 0.130 0.870 49 H 0.089 0.911 50 H 0.072 0.928 51 H 0.071 0.929 52 H 0.109 0.891 53 H 0.226 0.774 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.597 6.307 -4.113 20.063 hybrid contribution 1.620 -0.608 -0.738 1.881 sum -16.977 5.699 -4.851 18.554 Atomic orbital electron populations 1.21755 0.95046 1.02094 1.01936 1.21579 0.96437 0.95260 1.02772 1.21435 0.90772 0.98623 1.02583 1.21546 0.98351 0.92143 1.01003 0.88407 1.21443 0.95135 1.01499 0.95969 1.21785 0.96666 1.00525 1.02120 1.21056 0.76358 0.89677 0.82441 1.90637 1.53881 1.63788 1.37521 1.47852 1.67463 1.11598 1.06630 1.21940 1.02508 0.94859 0.86938 1.21495 0.91853 0.81687 1.03535 1.23892 0.96826 0.94397 0.95044 0.91829 1.23163 0.96456 0.95086 1.00318 1.23612 0.95402 0.91975 1.01821 1.68755 1.16495 1.01045 1.30256 1.22198 0.96982 0.96234 0.94418 1.20497 0.84053 0.82750 0.89450 1.90485 1.68964 1.67267 1.23008 1.41937 1.40177 1.25046 1.13821 1.19619 1.22257 1.09364 0.95014 0.90186 1.26035 0.99153 0.97128 0.98784 1.69677 1.42959 1.24619 1.18782 0.85005 0.78003 0.77635 0.77802 1.19512 1.19788 1.19483 0.92506 0.92768 0.92088 0.91336 0.91417 0.91070 0.92033 0.89079 0.92003 0.92931 0.91950 0.94983 0.90402 0.91863 0.90491 0.88017 0.89847 0.88547 0.87039 0.91093 0.92770 0.92876 0.89125 0.77407 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 71.98 0.71 -1.11 16 2 C -0.12 -1.71 5.70 30.59 0.17 -1.54 16 3 C -0.10 -1.61 4.67 30.60 0.14 -1.47 16 4 C -0.11 -2.32 1.67 -11.54 -0.02 -2.34 16 5 H 0.10 2.01 5.91 -2.39 -0.01 2.00 16 6 C -0.10 -2.28 5.00 30.59 0.15 -2.13 16 7 C -0.15 -4.05 9.76 71.98 0.70 -3.34 16 8 C 0.52 13.52 5.83 87.66 0.51 14.04 16 9 O -0.58 -18.93 15.30 -3.04 -0.05 -18.98 16 10 N -0.60 -14.27 2.70 -846.77 -2.29 -16.55 16 11 C 0.08 1.71 9.52 127.77 1.22 2.93 16 12 C 0.14 3.04 5.50 86.38 0.47 3.52 16 13 C 0.01 0.23 3.37 42.20 0.14 0.37 16 14 H 0.06 1.84 7.77 -2.39 -0.02 1.82 16 15 C -0.11 -2.37 8.00 30.94 0.25 -2.12 16 16 C 0.00 0.03 6.71 83.58 0.56 0.59 16 17 N -0.44 -14.27 4.71 -906.62 -4.27 -18.55 16 18 C 0.03 1.26 5.31 85.56 0.45 1.72 16 19 C 0.45 21.62 7.62 87.66 0.67 22.29 16 20 O -0.61 -33.69 15.34 -3.08 -0.05 -33.74 16 21 N -0.57 -29.96 5.29 -306.98 -1.62 -31.58 16 22 C -0.33 -18.98 9.68 84.04 0.81 -18.16 16 23 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 24 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 25 N -0.92 -49.90 13.05 21.66 0.28 -49.62 16 26 Si 0.99 42.88 29.55 68.60 2.03 44.90 16 27 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 28 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 29 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.94 6.45 -2.39 -0.02 0.93 16 34 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.09 1.63 6.32 -2.39 -0.02 1.62 16 38 H 0.06 1.52 7.65 -2.39 -0.02 1.50 16 39 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.03 0.97 7.05 -2.39 -0.02 0.96 16 42 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.06 1.41 6.16 -2.39 -0.01 1.40 16 44 H 0.08 1.94 7.35 -2.39 -0.02 1.92 16 45 H 0.10 1.85 7.80 -2.39 -0.02 1.83 16 46 H 0.08 1.86 7.50 -2.38 -0.02 1.84 16 47 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.11 1.99 7.93 -2.39 -0.02 1.97 16 49 H 0.07 2.44 8.13 -2.39 -0.02 2.42 16 50 H 0.05 1.73 7.70 -2.38 -0.02 1.71 16 51 H 0.05 1.95 7.56 -2.39 -0.02 1.94 16 52 H 0.09 3.27 7.85 -2.39 -0.02 3.25 16 53 H 0.39 19.93 7.90 -92.71 -0.73 19.20 16 54 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -69.41 424.91 1.59 -67.81 By element: Atomic # 1 Polarization: 43.06 SS G_CDS: 0.14 Total: 43.20 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: 7.42 Total: 13.11 kcal Atomic # 7 Polarization: -108.40 SS G_CDS: -7.90 Total: -116.31 kcal Atomic # 8 Polarization: -52.62 SS G_CDS: -0.09 Total: -52.72 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -69.41 1.59 -67.81 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691405522.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.383 kcal (2) G-P(sol) polarization free energy of solvation -69.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds