Wall clock time and date at job start Tue Mar 31 2020 23:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21277 * 119.99604 * 2 1 4 4 N 1.34772 * 119.99985 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99760 * 179.97438 * 4 2 1 6 6 H 1.09000 * 109.47401 * 35.00101 * 5 4 2 7 7 C 1.50702 * 109.47061 * 154.99855 * 5 4 2 8 8 O 1.21277 * 119.99971 * 21.12719 * 7 5 4 9 9 N 1.34781 * 120.00154 * 201.12815 * 7 5 4 10 10 C 1.46956 * 120.36447 * 174.87088 * 9 7 5 11 11 C 1.52333 * 109.09525 * 291.61350 * 10 9 7 12 12 C 1.53808 * 109.16151 * 287.31163 * 11 10 9 13 13 C 1.52441 * 109.41253 * 77.83803 * 12 11 10 14 14 C 1.53957 * 110.72849 * 246.26968 * 13 12 11 15 15 C 1.52877 * 109.72486 * 44.36018 * 14 13 12 16 16 H 1.08994 * 109.49107 * 312.91484 * 15 14 13 17 17 N 1.46503 * 109.48415 * 192.86139 * 15 14 13 18 18 C 1.36938 * 119.99715 * 84.99998 * 17 15 14 19 19 H 1.07994 * 120.00351 * 0.02562 * 18 17 15 20 20 C 1.38816 * 119.99439 * 179.97438 * 18 17 15 21 21 N 1.31612 * 120.00548 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99461 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.47447 * 60.00341 * 22 20 18 24 24 H 1.48498 * 109.47030 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47335 * 300.00137 * 22 20 18 26 26 C 1.45330 * 120.36042 * 354.84663 * 9 7 5 27 27 C 1.52995 * 109.47182 * 274.99718 * 5 4 2 28 28 C 1.53001 * 109.47002 * 303.33886 * 27 5 4 29 29 C 1.53006 * 109.47158 * 63.33828 * 27 5 4 30 30 H 1.09000 * 109.46999 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46881 * 299.99517 * 1 2 3 32 32 H 1.08995 * 109.47818 * 60.00004 * 1 2 3 33 33 H 0.97000 * 120.00519 * 359.97438 * 4 2 1 34 34 H 1.09003 * 109.52883 * 171.73303 * 10 9 7 35 35 H 1.08992 * 109.53655 * 51.49998 * 10 9 7 36 36 H 1.09003 * 109.52484 * 167.40891 * 11 10 9 37 37 H 1.08997 * 109.52781 * 47.21381 * 11 10 9 38 38 H 1.09000 * 109.47702 * 317.85767 * 12 11 10 39 39 H 1.09000 * 109.48149 * 197.82975 * 12 11 10 40 40 H 1.08994 * 109.22948 * 125.94403 * 13 12 11 41 41 H 1.09002 * 109.19108 * 6.56723 * 13 12 11 42 42 H 1.08993 * 109.42562 * 284.28418 * 14 13 12 43 43 H 1.08996 * 109.42784 * 164.44027 * 14 13 12 44 44 H 0.96998 * 120.00050 * 265.00293 * 17 15 14 45 45 H 0.96999 * 120.00103 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.68156 * 16.94260 * 26 9 7 47 47 H 1.09002 * 109.67588 * 256.40792 * 26 9 7 48 48 H 1.08994 * 109.47282 * 183.34053 * 27 5 4 49 49 H 1.09001 * 109.46833 * 53.68786 * 28 27 5 50 50 H 1.09005 * 109.46999 * 173.68525 * 28 27 5 51 51 H 1.08999 * 109.47260 * 293.68496 * 28 27 5 52 52 H 1.08997 * 109.46584 * 59.99864 * 29 27 5 53 53 H 1.08999 * 109.47012 * 179.97438 * 29 27 5 54 54 H 1.08996 * 109.46694 * 300.00335 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 1 4.0095 -0.3254 0.5884 7 6 4.1485 -2.4549 0.5989 8 8 3.4270 -3.4290 0.6355 9 7 5.3998 -2.5241 1.0949 10 6 5.8604 -3.7387 1.7822 11 6 5.1089 -3.8812 3.0996 12 6 5.6276 -2.8278 4.0931 13 6 5.0209 -1.4707 3.7553 14 6 6.1084 -0.4918 3.2762 15 6 7.0391 -1.1971 2.2896 16 1 7.3311 -2.1661 2.6943 17 7 8.2339 -0.3773 2.0736 18 6 9.2932 -0.4702 2.9365 19 1 9.2480 -1.1480 3.7760 20 6 10.4255 0.3063 2.7314 21 7 10.4808 1.1320 1.7081 22 14 11.8707 0.1790 3.9081 23 1 12.3863 -1.2137 3.9102 24 1 12.9468 1.1050 3.4724 25 1 11.4279 0.5449 5.2775 26 6 6.3085 -1.3986 0.9554 27 6 4.1553 -1.0411 -1.4382 28 6 3.5776 -2.1766 -2.2855 29 6 3.7148 0.3039 -2.0194 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.6960 -2.0072 -0.0005 34 1 6.9298 -3.6626 1.9790 35 1 5.6650 -4.6085 1.1552 36 1 5.2739 -4.8786 3.5071 37 1 4.0432 -3.7278 2.9295 38 1 6.7137 -2.7676 4.0249 39 1 5.3420 -3.1118 5.1060 40 1 4.5367 -1.0631 4.6426 41 1 4.2786 -1.5962 2.9671 42 1 6.6851 -0.1431 4.1329 43 1 5.6383 0.3604 2.7855 44 1 8.2747 0.2313 1.3194 45 1 11.2719 1.6748 1.5650 46 1 5.7442 -0.4998 0.7066 47 1 7.0330 -1.6072 0.1682 48 1 5.2436 -1.1007 -1.4445 49 1 2.4919 -2.1855 -2.1892 50 1 3.8485 -2.0244 -3.3303 51 1 3.9808 -3.1287 -1.9406 52 1 4.1264 1.1128 -1.4158 53 1 4.0781 0.3939 -3.0431 54 1 2.6264 0.3634 -2.0131 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692132000.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:41 Heat of formation + Delta-G solvation = -79.642309 kcal Electronic energy + Delta-G solvation = -32963.043595 eV Core-core repulsion = 28934.346449 eV Total energy + Delta-G solvation = -4028.697146 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.19449 -40.64139 -39.03719 -37.17342 -36.22929 -35.31870 -34.19670 -33.92889 -31.79458 -30.83001 -29.17272 -28.11217 -27.97861 -26.95879 -25.48781 -23.83819 -22.96365 -22.23126 -21.09837 -20.54317 -20.04846 -19.36425 -18.39304 -17.80834 -17.40044 -17.13005 -16.89011 -16.59015 -16.19152 -15.58708 -15.52375 -15.35906 -15.07911 -14.96273 -14.89147 -14.64836 -14.42014 -14.27437 -13.86608 -13.63858 -13.39535 -13.30307 -13.16575 -13.10499 -12.90143 -12.80576 -12.77333 -12.46099 -12.42622 -12.34187 -12.16882 -12.08104 -11.99981 -11.80805 -11.79742 -11.56742 -11.45681 -11.41085 -10.93023 -10.87312 -10.68264 -10.11235 -9.59277 -8.97439 -7.91221 -5.19694 1.39065 1.49554 1.51217 1.56977 1.66181 1.76411 2.36040 2.59212 3.24599 3.42060 3.64204 3.72225 3.82585 3.86501 3.94628 4.01647 4.08699 4.12355 4.13898 4.20105 4.35465 4.38233 4.49268 4.53555 4.55338 4.59525 4.63794 4.68366 4.74596 4.76148 4.82996 4.89585 4.92178 4.93052 4.94992 5.05592 5.09772 5.10338 5.19201 5.26083 5.28125 5.35279 5.36373 5.38472 5.43476 5.49841 5.55860 5.63699 6.28664 6.32282 6.54547 6.98476 7.25721 7.37009 8.10382 8.33602 9.31686 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013060 B = 0.003618 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.402186 B = 7738.228505 C = 8462.824389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.505 3.495 3 O -0.582 6.582 4 N -0.703 5.703 5 C 0.131 3.869 6 H 0.092 0.908 7 C 0.523 3.477 8 O -0.553 6.553 9 N -0.587 5.587 10 C 0.110 3.890 11 C -0.125 4.125 12 C -0.124 4.124 13 C -0.106 4.106 14 C -0.127 4.127 15 C 0.157 3.843 16 H 0.075 0.925 17 N -0.733 5.733 18 C -0.233 4.233 19 H 0.076 0.924 20 C -0.071 4.071 21 N -0.967 5.967 22 Si 0.965 3.035 23 H -0.277 1.277 24 H -0.299 1.299 25 H -0.282 1.282 26 C 0.105 3.895 27 C -0.101 4.101 28 C -0.137 4.137 29 C -0.129 4.129 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.416 0.584 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.042 0.958 43 H 0.041 0.959 44 H 0.373 0.627 45 H 0.250 0.750 46 H 0.082 0.918 47 H 0.070 0.930 48 H 0.079 0.921 49 H 0.064 0.936 50 H 0.068 0.932 51 H 0.046 0.954 52 H 0.042 0.958 53 H 0.063 0.937 54 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.209 -9.856 -4.241 22.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.294 3.706 3 O -0.462 6.462 4 N -0.358 5.358 5 C 0.022 3.978 6 H 0.109 0.891 7 C 0.311 3.689 8 O -0.432 6.432 9 N -0.318 5.318 10 C -0.011 4.011 11 C -0.163 4.163 12 C -0.161 4.161 13 C -0.144 4.144 14 C -0.167 4.167 15 C 0.048 3.952 16 H 0.092 0.908 17 N -0.373 5.373 18 C -0.365 4.365 19 H 0.094 0.906 20 C -0.263 4.263 21 N -0.618 5.618 22 Si 0.795 3.205 23 H -0.203 1.203 24 H -0.226 1.226 25 H -0.208 1.208 26 C -0.019 4.019 27 C -0.121 4.121 28 C -0.194 4.194 29 C -0.186 4.186 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.255 0.745 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.204 0.796 45 H 0.058 0.942 46 H 0.100 0.900 47 H 0.089 0.911 48 H 0.097 0.903 49 H 0.083 0.917 50 H 0.087 0.913 51 H 0.065 0.935 52 H 0.061 0.939 53 H 0.082 0.918 54 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.044 -9.712 -4.072 22.642 hybrid contribution 1.150 0.500 0.417 1.322 sum -18.894 -9.212 -3.655 21.335 Atomic orbital electron populations 1.21872 0.87939 1.06212 1.06133 1.21563 0.92230 0.82556 0.74214 1.90755 1.71634 1.32711 1.51095 1.45880 1.04969 1.10043 1.74876 1.20812 0.83181 0.95838 0.98011 0.89060 1.20409 0.81446 0.89627 0.77423 1.90632 1.56123 1.37890 1.58542 1.47652 1.12216 1.16306 1.55671 1.21695 0.99663 0.86229 0.93519 1.21949 1.00059 0.99876 0.94381 1.21798 1.00798 0.94143 0.99362 1.21613 0.97247 0.95497 1.00082 1.22298 0.96927 0.97981 0.99529 1.21073 0.86113 0.95055 0.92928 0.90760 1.42483 1.14123 1.48584 1.32086 1.19481 0.93701 1.18064 1.05275 0.90593 1.25451 1.01057 0.99757 1.00069 1.69792 1.29887 1.29992 1.32082 0.85334 0.79341 0.77231 0.78588 1.20261 1.22581 1.20789 1.21892 0.92715 0.88979 0.98309 1.21475 1.00758 0.97479 0.92381 1.21745 1.01528 0.96428 0.99747 1.21762 1.01455 0.95056 1.00350 0.88061 0.88035 0.87548 0.74547 0.89250 0.90327 0.89165 0.91894 0.91754 0.91083 0.92630 0.93015 0.93892 0.94044 0.79553 0.94160 0.90026 0.91131 0.90316 0.91670 0.91287 0.93458 0.93928 0.91820 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 10.39 71.24 0.74 -1.13 16 2 C 0.51 10.78 6.43 87.66 0.56 11.34 16 3 O -0.58 -17.63 14.23 -3.02 -0.04 -17.68 16 4 N -0.70 -14.39 3.98 -446.11 -1.77 -16.16 16 5 C 0.13 3.22 1.53 44.24 0.07 3.28 16 6 H 0.09 2.69 5.97 -2.39 -0.01 2.67 16 7 C 0.52 13.52 4.36 87.66 0.38 13.90 16 8 O -0.55 -15.30 14.75 -3.02 -0.04 -15.35 16 9 N -0.59 -15.42 1.68 -823.98 -1.39 -16.80 16 10 C 0.11 2.68 5.17 86.07 0.45 3.12 16 11 C -0.12 -2.80 5.56 30.65 0.17 -2.63 16 12 C -0.12 -3.10 5.49 30.68 0.17 -2.93 16 13 C -0.11 -3.00 5.41 30.73 0.17 -2.83 16 14 C -0.13 -4.44 5.33 30.88 0.16 -4.27 16 15 C 0.16 5.65 2.29 45.10 0.10 5.75 16 16 H 0.07 2.63 3.29 -2.39 -0.01 2.63 16 17 N -0.73 -34.62 5.12 -322.42 -1.65 -36.27 16 18 C -0.23 -12.29 9.90 84.03 0.83 -11.45 16 19 H 0.08 3.83 7.83 -2.91 -0.02 3.81 16 20 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 21 N -0.97 -57.66 13.06 21.65 0.28 -57.38 16 22 Si 0.97 45.04 29.55 68.60 2.03 47.07 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 24 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 25 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 26 C 0.11 3.20 4.48 86.75 0.39 3.59 16 27 C -0.10 -2.32 2.55 -10.79 -0.03 -2.35 16 28 C -0.14 -2.69 8.78 71.98 0.63 -2.06 16 29 C -0.13 -3.10 7.76 71.98 0.56 -2.54 16 30 H 0.10 0.65 7.91 -2.39 -0.02 0.63 16 31 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.42 7.22 7.53 -92.71 -0.70 6.53 16 34 H 0.09 2.25 6.07 -2.39 -0.01 2.24 16 35 H 0.08 1.80 8.04 -2.39 -0.02 1.78 16 36 H 0.09 1.67 8.14 -2.39 -0.02 1.66 16 37 H 0.06 1.57 6.37 -2.39 -0.02 1.56 16 38 H 0.06 1.82 5.47 -2.39 -0.01 1.81 16 39 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.05 1.47 5.37 -2.39 -0.01 1.46 16 42 H 0.04 1.70 8.11 -2.39 -0.02 1.68 16 43 H 0.04 1.50 7.87 -2.39 -0.02 1.48 16 44 H 0.37 19.11 7.80 -92.71 -0.72 18.39 16 45 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 46 H 0.08 2.49 5.04 -2.39 -0.01 2.48 16 47 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.08 1.91 7.07 -2.39 -0.02 1.89 16 49 H 0.06 1.16 7.28 -2.39 -0.02 1.15 16 50 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 51 H 0.05 1.02 7.43 -2.39 -0.02 1.00 16 52 H 0.04 1.21 7.75 -2.39 -0.02 1.19 16 53 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 54 H 0.05 1.33 5.69 -2.39 -0.01 1.31 16 Total: -1.00 -66.25 395.97 2.73 -63.52 By element: Atomic # 1 Polarization: 44.21 SS G_CDS: -0.50 Total: 43.71 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 5.82 Total: 5.33 kcal Atomic # 7 Polarization: -122.08 SS G_CDS: -4.53 Total: -126.61 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -0.09 Total: -33.03 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -66.25 2.73 -63.52 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692132000.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.121 kcal (2) G-P(sol) polarization free energy of solvation -66.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds