Wall clock time and date at job start Tue Mar 31 2020 22:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47317 * 2 1 4 4 C 1.53001 * 109.47379 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46679 * 54.99485 * 4 3 2 6 6 C 1.52996 * 109.47297 * 175.00185 * 4 3 2 7 7 N 1.46497 * 109.46707 * 295.00379 * 4 3 2 8 8 C 1.46765 * 124.35299 * 120.00225 * 7 4 3 9 9 C 1.54479 * 105.47730 * 163.00148 * 8 7 4 10 10 H 1.09006 * 110.96674 * 267.25807 * 9 8 7 11 11 C 1.50697 * 110.96908 * 143.53379 * 9 8 7 12 12 O 1.21280 * 120.00003 * 331.71322 * 11 9 8 13 13 N 1.34780 * 120.00010 * 151.72369 * 11 9 8 14 14 C 1.46507 * 119.99785 * 5.08897 * 13 11 9 15 15 C 1.46494 * 120.00360 * 185.09551 * 13 11 9 16 16 C 1.52997 * 109.47288 * 270.00149 * 15 13 11 17 17 C 1.52996 * 109.47581 * 179.97438 * 16 15 13 18 18 N 1.46493 * 109.47548 * 179.97438 * 17 16 15 19 19 C 1.36939 * 120.00280 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99869 * 359.97438 * 19 18 17 21 21 C 1.38811 * 120.00259 * 180.02562 * 19 18 17 22 22 N 1.31618 * 119.99807 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00077 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47452 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47028 * 119.99707 * 23 21 19 26 26 H 1.48505 * 109.47321 * 239.99734 * 23 21 19 27 27 C 1.54631 * 101.76470 * 25.41048 * 9 8 7 28 28 C 1.34420 * 124.34810 * 300.01360 * 7 4 3 29 29 O 1.21278 * 124.94374 * 0.43686 * 28 7 4 30 30 H 1.09002 * 109.46729 * 299.99704 * 1 2 3 31 31 H 1.08996 * 109.47179 * 59.99647 * 1 2 3 32 32 H 1.08997 * 109.47290 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.46734 * 239.99886 * 2 1 3 34 34 H 1.08996 * 109.47179 * 120.00353 * 2 1 3 35 35 H 1.08995 * 109.47180 * 60.00111 * 3 2 1 36 36 H 1.09005 * 109.47187 * 300.00079 * 3 2 1 37 37 H 1.09006 * 109.47057 * 180.02562 * 6 4 3 38 38 H 1.09001 * 109.46785 * 299.99449 * 6 4 3 39 39 H 1.08998 * 109.47164 * 59.99792 * 6 4 3 40 40 H 1.08997 * 110.24504 * 43.99421 * 8 7 4 41 41 H 1.09000 * 110.24333 * 281.99907 * 8 7 4 42 42 H 1.09001 * 109.47450 * 298.52743 * 14 13 11 43 43 H 1.08996 * 109.46937 * 178.52691 * 14 13 11 44 44 H 1.08998 * 109.46872 * 58.52889 * 14 13 11 45 45 H 1.09005 * 109.47073 * 29.99350 * 15 13 11 46 46 H 1.09000 * 109.47145 * 149.99339 * 15 13 11 47 47 H 1.09005 * 109.46410 * 299.99606 * 16 15 13 48 48 H 1.08991 * 109.47505 * 59.99350 * 16 15 13 49 49 H 1.09002 * 109.46978 * 299.99834 * 17 16 15 50 50 H 1.09003 * 109.47377 * 59.98858 * 17 16 15 51 51 H 0.97004 * 119.99904 * 359.97438 * 18 17 16 52 52 H 0.96997 * 120.00033 * 180.02562 * 22 21 19 53 53 H 1.08999 * 110.48073 * 93.88148 * 27 9 8 54 54 H 1.08991 * 110.48627 * 216.52430 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8530 -0.8427 6 6 4.0800 2.8794 -0.1263 7 7 4.0588 0.8584 1.2508 8 6 4.9061 -0.3372 1.3314 9 6 5.5130 -0.3174 2.7519 10 1 6.4811 0.1835 2.7554 11 6 5.6290 -1.7131 3.3083 12 8 4.8573 -2.5761 2.9468 13 7 6.5901 -2.0022 4.2079 14 6 7.4504 -0.9368 4.7286 15 6 6.7746 -3.3818 4.6649 16 6 5.9034 -3.6316 5.8975 17 6 6.0956 -5.0726 6.3744 18 7 5.2619 -5.3116 7.5550 19 6 5.2692 -6.5394 8.1613 20 1 5.8894 -7.3317 7.7688 21 6 4.4788 -6.7661 9.2797 22 7 3.7226 -5.8006 9.7576 23 14 4.4884 -8.4412 10.1062 24 1 5.4151 -9.3462 9.3801 25 1 4.9390 -8.2960 11.5138 26 1 3.1181 -9.0132 10.0817 27 6 4.4611 0.5041 3.5327 28 6 3.7887 1.3487 2.4729 29 8 3.1047 2.3255 2.6939 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.6768 1.9562 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 5.1701 2.8793 -0.1272 38 1 3.7163 3.3138 -1.0575 39 1 3.7170 3.4687 0.7157 40 1 5.6968 -0.2904 0.5827 41 1 4.3051 -1.2356 1.1906 42 1 8.0116 -0.4893 3.9083 43 1 8.1442 -1.3542 5.4583 44 1 6.8355 -0.1743 5.2067 45 1 6.4854 -4.0695 3.8702 46 1 7.8217 -3.5426 4.9213 47 1 6.1926 -2.9438 6.6922 48 1 4.8564 -3.4708 5.6411 49 1 5.8061 -5.7600 5.5796 50 1 7.1427 -5.2339 6.6307 51 1 4.7051 -4.5999 7.9077 52 1 3.1706 -5.9589 10.5393 53 1 3.7376 -0.1573 4.0093 54 1 4.9463 1.1381 4.2747 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699551979.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:28 Heat of formation + Delta-G solvation = -94.365721 kcal Electronic energy + Delta-G solvation = -30220.270691 eV Core-core repulsion = 26190.935089 eV Total energy + Delta-G solvation = -4029.335601 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.06998 -40.61258 -37.75845 -37.53321 -36.65549 -36.40294 -34.18821 -33.71235 -31.81053 -30.77764 -28.82967 -27.91360 -27.62420 -26.92123 -25.10625 -23.61507 -23.33571 -22.47873 -22.25680 -20.04956 -19.91083 -19.16157 -18.68133 -17.79672 -17.24838 -17.00825 -16.59358 -16.33365 -16.07889 -15.91796 -15.65007 -15.32315 -15.09235 -15.05468 -14.82126 -14.65496 -14.47214 -14.30661 -13.89368 -13.76581 -13.56694 -13.55556 -13.38538 -13.09389 -12.99812 -12.91399 -12.79450 -12.71472 -12.64935 -12.46230 -12.40370 -12.32929 -12.03356 -11.92135 -11.82089 -11.77515 -11.65665 -11.62045 -10.99836 -10.96791 -10.60247 -9.71182 -9.64798 -9.03895 -7.97836 -5.27783 1.41880 1.45732 1.47577 1.55299 1.57755 1.84328 2.10773 2.54650 3.13930 3.35894 3.39579 3.57680 3.71147 3.86453 3.89312 3.99654 4.02218 4.06095 4.12463 4.26323 4.30126 4.37954 4.41676 4.49773 4.54840 4.55855 4.56422 4.62067 4.68574 4.71220 4.74551 4.76882 4.80246 4.86738 4.89451 4.93904 4.95431 4.97739 5.03896 5.19698 5.23764 5.30338 5.30737 5.31507 5.37460 5.47256 5.56533 5.68599 6.09930 6.24539 6.38356 7.11475 7.13760 7.29814 8.05767 8.28354 9.26304 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014794 B = 0.002071 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.192572 B =13514.975141 C =14447.767986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.133 4.133 4 C 0.150 3.850 5 H 0.115 0.885 6 C -0.160 4.160 7 N -0.605 5.605 8 C 0.115 3.885 9 C -0.107 4.107 10 H 0.151 0.849 11 C 0.519 3.481 12 O -0.576 6.576 13 N -0.609 5.609 14 C 0.066 3.934 15 C 0.128 3.872 16 C -0.123 4.123 17 C 0.154 3.846 18 N -0.750 5.750 19 C -0.246 4.246 20 H 0.079 0.921 21 C -0.081 4.081 22 N -0.972 5.972 23 Si 0.978 3.022 24 H -0.263 1.263 25 H -0.290 1.290 26 H -0.294 1.294 27 C -0.140 4.140 28 C 0.517 3.483 29 O -0.566 6.566 30 H 0.039 0.961 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.037 0.963 35 H 0.048 0.952 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.117 0.883 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.110 0.890 47 H 0.066 0.934 48 H 0.035 0.965 49 H 0.014 0.986 50 H 0.035 0.965 51 H 0.371 0.629 52 H 0.252 0.748 53 H 0.087 0.913 54 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.867 19.266 -24.884 32.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.171 4.171 4 C 0.049 3.951 5 H 0.133 0.867 6 C -0.218 4.218 7 N -0.338 5.338 8 C -0.008 4.008 9 C -0.129 4.129 10 H 0.169 0.831 11 C 0.307 3.693 12 O -0.455 6.455 13 N -0.340 5.340 14 C -0.076 4.076 15 C 0.004 3.996 16 C -0.162 4.162 17 C 0.027 3.973 18 N -0.393 5.393 19 C -0.378 4.378 20 H 0.097 0.903 21 C -0.273 4.273 22 N -0.623 5.623 23 Si 0.807 3.193 24 H -0.187 1.187 25 H -0.217 1.217 26 H -0.222 1.222 27 C -0.180 4.180 28 C 0.306 3.694 29 O -0.445 6.445 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.135 0.865 41 H 0.089 0.911 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.128 0.872 47 H 0.085 0.915 48 H 0.054 0.946 49 H 0.032 0.968 50 H 0.053 0.947 51 H 0.203 0.797 52 H 0.060 0.940 53 H 0.106 0.894 54 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.193 19.169 -25.050 32.590 hybrid contribution -0.916 -0.820 1.263 1.762 sum 7.277 18.349 -23.788 30.911 Atomic orbital electron populations 1.21756 0.95790 1.01653 1.01717 1.21465 0.96090 0.96623 1.01528 1.22009 0.95049 0.97135 1.02894 1.21240 0.93592 0.95287 0.84995 0.86701 1.22110 1.01775 0.95160 1.02742 1.48469 1.50767 1.28360 1.06189 1.22128 0.94822 0.87599 0.96215 1.22242 1.02538 0.92525 0.95578 0.83115 1.20602 0.79666 0.90133 0.78904 1.90740 1.42592 1.50602 1.61558 1.47963 1.34405 1.09571 1.42098 1.22192 0.94585 0.89816 1.00982 1.21374 1.00619 0.82494 0.95073 1.21877 0.99677 0.96303 0.98316 1.20726 0.94051 0.94541 0.87981 1.42639 1.52298 1.12193 1.32158 1.19726 1.20150 0.90733 1.07188 0.90334 1.25672 0.99833 1.01778 1.00001 1.69839 1.32309 1.33771 1.26416 0.85002 0.77143 0.79216 0.77969 1.18737 1.21700 1.22156 1.22280 0.98615 0.98913 0.98212 1.20929 0.79812 0.83604 0.85082 1.90684 1.41044 1.28465 1.84353 0.94204 0.91317 0.92799 0.90599 0.94417 0.93309 0.89054 0.91367 0.89662 0.93820 0.86537 0.91065 0.88764 0.89098 0.91112 0.91256 0.87219 0.91548 0.94605 0.96798 0.94731 0.79733 0.93965 0.89426 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.91 71.98 0.71 -1.90 16 2 C -0.12 -2.07 5.82 30.59 0.18 -1.89 16 3 C -0.13 -2.16 4.64 30.59 0.14 -2.01 16 4 C 0.15 2.00 2.86 44.99 0.13 2.13 16 5 H 0.12 0.96 8.07 -2.39 -0.02 0.94 16 6 C -0.16 -1.98 9.20 71.98 0.66 -1.32 16 7 N -0.60 -9.85 2.28 -794.05 -1.81 -11.66 16 8 C 0.12 1.56 6.82 86.83 0.59 2.15 16 9 C -0.11 -1.44 2.90 -10.48 -0.03 -1.47 16 10 H 0.15 0.84 6.62 -2.38 -0.02 0.82 16 11 C 0.52 11.11 6.72 87.66 0.59 11.70 16 12 O -0.58 -18.13 15.38 -3.03 -0.05 -18.18 16 13 N -0.61 -11.26 2.87 -846.76 -2.43 -13.69 16 14 C 0.07 0.61 9.56 127.77 1.22 1.83 16 15 C 0.13 2.99 5.33 86.38 0.46 3.45 16 16 C -0.12 -4.00 5.65 30.59 0.17 -3.83 16 17 C 0.15 6.25 6.26 86.38 0.54 6.79 16 18 N -0.75 -39.99 5.60 -343.47 -1.92 -41.91 16 19 C -0.25 -14.22 9.99 84.03 0.84 -13.38 16 20 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 21 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 22 N -0.97 -61.48 13.06 21.65 0.28 -61.19 16 23 Si 0.98 47.09 29.55 68.60 2.03 49.12 16 24 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 26 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 27 C -0.14 -2.45 6.41 30.59 0.20 -2.26 16 28 C 0.52 11.29 7.39 87.90 0.65 11.94 16 29 O -0.57 -16.63 15.07 -3.02 -0.05 -16.68 16 30 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.04 0.84 7.75 -2.39 -0.02 0.82 16 35 H 0.05 1.13 6.62 -2.39 -0.02 1.11 16 36 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.04 0.82 6.80 -2.39 -0.02 0.80 16 40 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.07 1.34 6.93 -2.39 -0.02 1.33 16 42 H 0.09 0.30 7.34 -2.39 -0.02 0.28 16 43 H 0.09 0.76 7.81 -2.39 -0.02 0.74 16 44 H 0.07 0.58 8.11 -2.39 -0.02 0.57 16 45 H 0.07 1.86 7.50 -2.38 -0.02 1.84 16 46 H 0.11 1.91 7.93 -2.39 -0.02 1.89 16 47 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 48 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 51 H 0.37 21.18 7.67 -92.71 -0.71 20.47 16 52 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 53 H 0.09 1.99 7.89 -2.39 -0.02 1.97 16 54 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -81.69 429.14 3.72 -77.97 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.15 Total: 28.63 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 7.52 Total: 7.60 kcal Atomic # 7 Polarization: -122.57 SS G_CDS: -5.89 Total: -128.46 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -0.09 Total: -34.86 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -81.69 3.72 -77.97 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699551979.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.394 kcal (2) G-P(sol) polarization free energy of solvation -81.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds