Wall clock time and date at job start Tue Mar 31 2020 22:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.53001 * 109.47000 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.46877 * 180.02562 * 4 3 2 6 6 O 1.21279 * 120.00399 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99785 * 179.97438 * 5 4 3 8 8 C 1.46501 * 120.00013 * 179.97438 * 7 5 4 9 9 H 1.09001 * 109.46779 * 325.00743 * 8 7 5 10 10 C 1.53004 * 109.46851 * 85.00193 * 8 7 5 11 11 C 1.52997 * 109.46918 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.46991 * 300.00032 * 11 10 8 13 13 H 1.08993 * 109.47369 * 299.99887 * 12 11 10 14 14 C 1.53006 * 109.46825 * 180.02562 * 12 11 10 15 15 N 1.46898 * 109.47138 * 65.00038 * 14 12 11 16 16 C 1.46906 * 110.99888 * 180.02562 * 15 14 12 17 17 C 1.50699 * 109.47140 * 179.97438 * 16 15 14 18 18 O 1.21289 * 119.99678 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99614 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99518 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00058 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00085 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99807 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00409 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47138 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47229 * 119.99992 * 24 22 20 27 27 H 1.48497 * 109.47429 * 239.99972 * 24 22 20 28 28 C 1.52994 * 109.46945 * 60.00260 * 12 11 10 29 29 C 1.52994 * 109.47225 * 205.00428 * 8 7 5 30 30 H 1.08999 * 109.47268 * 299.99764 * 1 2 3 31 31 H 1.09006 * 109.47075 * 60.00090 * 1 2 3 32 32 H 1.09000 * 109.47488 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47011 * 239.99793 * 2 1 3 34 34 H 1.08997 * 109.47241 * 120.00171 * 2 1 3 35 35 H 1.08999 * 109.46854 * 59.99983 * 3 2 1 36 36 H 1.08997 * 109.47200 * 300.00196 * 3 2 1 37 37 H 1.08999 * 109.47328 * 60.00277 * 4 3 2 38 38 H 1.09006 * 109.47141 * 299.99872 * 4 3 2 39 39 H 0.97002 * 120.00070 * 0.02562 * 7 5 4 40 40 H 1.09001 * 109.46904 * 300.00299 * 10 8 7 41 41 H 1.09004 * 109.46716 * 60.00222 * 10 8 7 42 42 H 1.08999 * 109.47008 * 180.02562 * 11 10 8 43 43 H 1.08996 * 109.47472 * 60.00179 * 11 10 8 44 44 H 1.08997 * 109.46770 * 304.99985 * 14 12 11 45 45 H 1.08995 * 109.47019 * 185.00198 * 14 12 11 46 46 H 1.00901 * 111.00121 * 56.04666 * 15 14 12 47 47 H 1.09004 * 109.47040 * 299.99934 * 16 15 14 48 48 H 1.09000 * 109.47033 * 59.99886 * 16 15 14 49 49 H 0.96996 * 120.00269 * 359.97438 * 19 17 16 50 50 H 0.97002 * 120.00022 * 179.97438 * 23 22 20 51 51 H 1.09002 * 109.47542 * 60.00250 * 28 12 11 52 52 H 1.09006 * 109.46971 * 179.97438 * 28 12 11 53 53 H 1.08999 * 109.47178 * 60.00125 * 29 8 7 54 54 H 1.09004 * 109.47263 * 300.00342 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4424 0.0006 5 6 4.0722 2.8633 0.0013 6 8 3.2842 3.7851 0.0008 7 7 5.3974 3.1096 0.0024 8 6 5.8857 4.4908 0.0025 9 1 5.2136 5.1138 -0.5877 10 6 5.9359 5.0139 1.4395 11 6 6.4453 6.4565 1.4395 12 6 7.8483 6.5020 0.8309 13 1 8.5207 5.8793 1.4209 14 6 8.3580 7.9446 0.8315 15 7 8.5201 8.4061 2.2166 16 6 9.0087 9.7910 2.2564 17 6 9.1617 10.2287 3.6903 18 8 8.8909 9.4623 4.5904 19 7 9.5994 11.4718 3.9722 20 6 9.7392 11.8698 5.2767 21 1 9.4980 11.1874 6.0783 22 6 10.1910 13.1512 5.5675 23 7 10.4848 13.9815 4.5921 24 14 10.3807 13.6939 7.3448 25 1 9.9879 12.5813 8.2466 26 1 11.7962 14.0623 7.6015 27 1 9.5094 14.8691 7.5993 28 6 7.7981 5.9789 -0.6060 29 6 7.2888 4.5357 -0.6059 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6766 1.9562 0.8900 36 1 1.6766 1.9563 -0.8899 37 1 3.9336 0.9285 -0.8891 38 1 3.9329 0.9287 0.8909 39 1 6.0277 2.3723 0.0025 40 1 4.9363 4.9818 1.8729 41 1 6.6080 4.3908 2.0296 42 1 6.4815 6.8290 2.4632 43 1 5.7730 7.0793 0.8494 44 1 7.6402 8.5837 0.3172 45 1 9.3185 7.9909 0.3183 46 1 9.1314 7.7917 2.7333 47 1 9.9737 9.8504 1.7530 48 1 8.2951 10.4426 1.7521 49 1 9.8163 12.0846 3.2523 50 1 10.7999 14.8762 4.7951 51 1 7.1257 6.6017 -1.1962 52 1 8.7976 6.0117 -1.0398 53 1 7.2530 4.1630 -1.6296 54 1 7.9608 3.9126 -0.0158 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700097521.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:26 Heat of formation + Delta-G solvation = -142.865284 kcal Electronic energy + Delta-G solvation = -28686.365636 eV Core-core repulsion = 24654.926936 eV Total energy + Delta-G solvation = -4031.438700 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.10652 -40.19361 -39.44104 -36.93475 -36.19135 -35.89203 -34.83141 -33.26921 -31.99233 -31.67588 -30.74527 -28.40385 -26.54547 -25.52773 -24.31864 -23.59632 -22.21464 -21.78610 -21.36601 -21.12676 -20.57608 -19.88974 -17.92991 -17.81871 -17.28812 -17.01032 -16.87248 -16.47932 -16.05281 -15.81475 -15.52466 -15.30842 -15.28232 -15.02138 -14.77724 -14.74136 -14.55764 -14.17360 -13.75795 -13.60798 -13.46880 -13.27659 -13.21595 -13.11857 -13.01751 -12.92255 -12.74550 -12.41285 -12.19440 -12.12168 -12.08064 -12.03597 -11.94408 -11.85125 -11.58301 -11.51914 -11.45182 -11.30214 -11.12886 -10.73140 -10.33631 -10.01886 -9.98956 -9.24955 -8.47401 -5.96162 1.36026 1.41235 1.55571 1.69850 2.04883 2.25744 2.28900 2.95217 3.19989 3.54278 3.71123 3.76874 3.88353 3.92235 3.97131 4.06923 4.14256 4.29910 4.36248 4.36658 4.42043 4.47463 4.48347 4.53030 4.57558 4.59581 4.63049 4.65346 4.74298 4.80746 4.82428 4.94592 4.96346 5.01066 5.05660 5.11422 5.15906 5.18355 5.25109 5.28507 5.34060 5.39067 5.40477 5.49323 5.52282 5.55859 5.62561 5.91133 6.13884 6.46219 6.59835 6.63681 7.12194 7.34870 7.55839 8.11302 8.70310 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021391 B = 0.001469 C = 0.001401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.635891 B =19055.496184 C =19978.929809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.119 4.119 3 C -0.106 4.106 4 C -0.132 4.132 5 C 0.502 3.498 6 O -0.592 6.592 7 N -0.716 5.716 8 C 0.148 3.852 9 H 0.061 0.939 10 C -0.121 4.121 11 C -0.100 4.100 12 C -0.076 4.076 13 H 0.073 0.927 14 C 0.064 3.936 15 N -0.683 5.683 16 C 0.066 3.934 17 C 0.437 3.563 18 O -0.623 6.623 19 N -0.573 5.573 20 C -0.335 4.335 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.274 1.274 26 H -0.269 1.269 27 H -0.271 1.271 28 C -0.106 4.106 29 C -0.113 4.113 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.051 0.949 37 H 0.120 0.880 38 H 0.115 0.885 39 H 0.417 0.583 40 H 0.037 0.963 41 H 0.070 0.930 42 H 0.052 0.948 43 H 0.049 0.951 44 H 0.070 0.930 45 H 0.044 0.956 46 H 0.343 0.657 47 H 0.067 0.933 48 H 0.100 0.900 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.063 0.937 52 H 0.085 0.915 53 H 0.084 0.916 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.203 -27.937 -17.308 33.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C -0.144 4.144 4 C -0.172 4.172 5 C 0.291 3.709 6 O -0.473 6.473 7 N -0.368 5.368 8 C 0.043 3.957 9 H 0.079 0.921 10 C -0.159 4.159 11 C -0.139 4.139 12 C -0.095 4.095 13 H 0.092 0.908 14 C -0.064 4.064 15 N -0.315 5.315 16 C -0.067 4.067 17 C 0.225 3.775 18 O -0.510 6.510 19 N -0.211 5.211 20 C -0.464 4.464 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.816 3.184 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.197 1.197 28 C -0.144 4.144 29 C -0.151 4.151 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.139 0.861 38 H 0.133 0.867 39 H 0.254 0.746 40 H 0.056 0.944 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.062 0.938 46 H 0.162 0.838 47 H 0.085 0.915 48 H 0.118 0.882 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.082 0.918 52 H 0.103 0.897 53 H 0.102 0.898 54 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.522 -27.420 -16.655 33.465 hybrid contribution 1.116 0.857 0.544 1.509 sum -8.407 -26.563 -16.110 32.184 Atomic orbital electron populations 1.21798 0.96142 1.02022 1.01484 1.21513 0.95819 0.95235 1.03060 1.21342 0.93805 0.97499 1.01728 1.21741 0.97127 0.91677 1.06648 1.21487 0.82308 0.92737 0.74390 1.90706 1.56640 1.48433 1.51490 1.46057 1.07019 1.09012 1.74698 1.20906 0.96298 0.82753 0.95773 0.92051 1.21835 1.00134 0.96912 0.97054 1.21355 0.96164 0.95324 1.01022 1.21115 0.96281 0.94817 0.97298 0.90828 1.22108 1.00064 0.96387 0.87879 1.60047 1.55472 1.01532 1.14450 1.21519 1.00577 0.92369 0.92226 1.20926 0.81984 0.82503 0.92129 1.90486 1.56175 1.54540 1.49782 1.41937 1.58531 1.12495 1.08106 1.19712 1.43461 0.98469 0.84779 0.90404 1.26031 0.96121 0.95215 1.03809 1.69680 1.45110 1.07848 1.33508 0.84874 0.78347 0.78057 0.77074 1.19848 1.19433 1.19650 1.21485 1.02399 0.95494 0.95027 1.21724 0.93681 0.97739 1.01925 0.93443 0.93159 0.91705 0.90611 0.90982 0.93513 0.93023 0.86146 0.86698 0.74635 0.94450 0.91093 0.92902 0.93209 0.91113 0.93751 0.83821 0.91520 0.88240 0.76982 0.91291 0.91800 0.89679 0.89767 0.89799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.91 71.98 0.71 -0.88 16 2 C -0.12 -1.04 5.93 30.59 0.18 -0.86 16 3 C -0.11 -1.43 4.50 30.59 0.14 -1.29 16 4 C -0.13 -1.27 5.70 29.85 0.17 -1.10 16 5 C 0.50 9.03 7.79 87.66 0.68 9.72 16 6 O -0.59 -17.12 15.65 -3.03 -0.05 -17.16 16 7 N -0.72 -9.37 5.08 -442.52 -2.25 -11.62 16 8 C 0.15 2.49 2.45 44.99 0.11 2.60 16 9 H 0.06 1.38 7.58 -2.39 -0.02 1.36 16 10 C -0.12 -2.56 5.49 30.59 0.17 -2.39 16 11 C -0.10 -2.40 5.09 30.59 0.16 -2.25 16 12 C -0.08 -1.46 2.33 -10.79 -0.03 -1.48 16 13 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 14 C 0.06 1.45 5.08 86.31 0.44 1.89 16 15 N -0.68 -21.66 5.58 -517.92 -2.89 -24.55 16 16 C 0.07 2.29 6.17 85.56 0.53 2.82 16 17 C 0.44 21.26 7.82 87.66 0.69 21.95 16 18 O -0.62 -35.31 15.78 -3.06 -0.05 -35.36 16 19 N -0.57 -29.98 5.29 -306.99 -1.62 -31.61 16 20 C -0.33 -19.35 9.68 84.04 0.81 -18.54 16 21 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 22 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 23 N -0.92 -50.18 13.05 21.66 0.28 -49.90 16 24 Si 0.99 43.49 29.55 68.60 2.03 45.52 16 25 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 27 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 28 C -0.11 -1.42 5.21 30.61 0.16 -1.26 16 29 C -0.11 -1.24 5.39 30.61 0.17 -1.07 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.05 0.84 8.10 -2.39 -0.02 0.82 16 36 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 37 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.42 2.36 8.60 -92.71 -0.80 1.57 16 40 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.05 1.59 7.75 -2.39 -0.02 1.57 16 43 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.34 11.34 8.43 -89.69 -0.76 10.59 16 47 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 48 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 49 H 0.40 19.64 7.90 -92.71 -0.73 18.91 16 50 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 51 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 52 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 53 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 54 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 Total: -1.00 -76.17 431.97 -0.39 -76.56 By element: Atomic # 1 Polarization: 41.87 SS G_CDS: -1.40 Total: 40.47 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 5.55 Total: 7.65 kcal Atomic # 7 Polarization: -111.20 SS G_CDS: -6.48 Total: -117.67 kcal Atomic # 8 Polarization: -52.43 SS G_CDS: -0.10 Total: -52.53 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -76.17 -0.39 -76.56 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700097521.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.302 kcal (2) G-P(sol) polarization free energy of solvation -76.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds