Wall clock time and date at job start Tue Mar 31 2020 22:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47300 * 2 1 4 4 C 1.53000 * 109.47234 * 120.00404 * 2 1 3 5 5 H 1.09007 * 109.47015 * 299.99360 * 4 2 1 6 6 C 1.53002 * 109.47234 * 179.97438 * 4 2 1 7 7 C 1.53003 * 109.46986 * 174.99641 * 6 4 2 8 8 N 1.46502 * 109.46564 * 179.97438 * 7 6 4 9 9 C 1.46493 * 120.00224 * 269.99784 * 8 7 6 10 10 C 1.34778 * 119.99926 * 90.00701 * 8 7 6 11 11 O 1.21287 * 119.99635 * 359.97438 * 10 8 7 12 12 C 1.50695 * 120.00354 * 179.97438 * 10 8 7 13 13 C 1.53002 * 109.47573 * 179.97438 * 12 10 8 14 14 H 1.09006 * 109.29488 * 54.58244 * 13 12 10 15 15 C 1.52916 * 109.30291 * 173.96274 * 13 12 10 16 16 C 1.53337 * 108.67361 * 171.06577 * 15 13 12 17 17 C 1.53066 * 108.42932 * 292.46900 * 16 15 13 18 18 C 1.50165 * 109.94860 * 48.68764 * 17 16 15 19 19 O 1.21278 * 118.23334 * 162.62557 * 18 17 16 20 20 N 1.33356 * 123.51899 * 342.91352 * 18 17 16 21 21 N 1.46503 * 109.47415 * 59.99383 * 4 2 1 22 22 C 1.36938 * 120.00262 * 275.00329 * 21 4 2 23 23 H 1.07998 * 119.99927 * 359.97438 * 22 21 4 24 24 C 1.38804 * 120.00015 * 179.97438 * 22 21 4 25 25 N 1.31624 * 120.00127 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00163 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.46882 * 59.99870 * 26 24 22 28 28 H 1.48503 * 109.47301 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47361 * 300.00295 * 26 24 22 30 30 H 1.08997 * 109.46586 * 299.99962 * 1 2 3 31 31 H 1.08993 * 109.46818 * 60.00116 * 1 2 3 32 32 H 1.09004 * 109.47232 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47111 * 239.99907 * 2 1 3 34 34 H 1.09004 * 109.46979 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.46802 * 300.00021 * 3 2 1 36 36 H 1.08997 * 109.47105 * 59.99928 * 3 2 1 37 37 H 1.08994 * 109.47450 * 54.99525 * 6 4 2 38 38 H 1.09005 * 109.46736 * 294.99667 * 6 4 2 39 39 H 1.08997 * 109.46865 * 60.00143 * 7 6 4 40 40 H 1.08995 * 109.47387 * 299.99593 * 7 6 4 41 41 H 1.09006 * 109.47337 * 270.00547 * 9 8 7 42 42 H 1.09005 * 109.47453 * 30.00260 * 9 8 7 43 43 H 1.08996 * 109.47506 * 150.00567 * 9 8 7 44 44 H 1.08999 * 109.46953 * 59.99361 * 12 10 8 45 45 H 1.09005 * 109.47028 * 300.00120 * 12 10 8 46 46 H 1.09006 * 109.60380 * 290.82164 * 15 13 12 47 47 H 1.09000 * 109.60428 * 51.30885 * 15 13 12 48 48 H 1.09000 * 109.67652 * 52.20619 * 16 15 13 49 49 H 1.09007 * 109.67245 * 172.69845 * 16 15 13 50 50 H 1.08999 * 109.40551 * 169.02592 * 17 16 15 51 51 H 1.09000 * 109.40190 * 288.77640 * 17 16 15 52 52 H 0.97001 * 117.94942 * 181.94611 * 20 18 17 53 53 H 0.96999 * 119.99251 * 95.00385 * 21 4 2 54 54 H 0.97002 * 120.00158 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6768 -0.2075 2.1392 6 6 3.5701 -0.7219 1.2489 7 6 4.0801 -1.3315 2.5562 8 7 5.5451 -1.3326 2.5555 9 6 6.2766 -2.4831 2.0194 10 6 6.2200 -0.2751 3.0484 11 8 5.6143 0.6775 3.4919 12 6 7.7269 -0.2763 3.0482 13 6 8.2381 1.0311 3.6567 14 1 7.7963 1.1658 4.6441 15 6 9.7597 0.9640 3.7934 16 6 10.2786 2.3513 4.1903 17 6 10.0535 3.3064 3.0156 18 6 8.6437 3.1790 2.5145 19 8 8.2002 4.0665 1.8171 20 7 7.8514 2.1449 2.7998 21 7 1.5516 -2.1025 1.2492 22 6 0.3101 -2.3898 1.7504 23 1 -0.3089 -1.5982 2.1461 24 6 -0.1528 -3.6984 1.7500 25 7 0.6018 -4.6632 1.2682 26 14 -1.8461 -4.0903 2.4343 27 1 -2.8754 -3.3454 1.6654 28 1 -2.1015 -5.5487 2.3184 29 1 -1.9081 -3.6884 3.8625 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9562 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 3.9338 0.3016 1.1591 38 1 3.9329 -1.3116 0.4070 39 1 3.7164 -2.3551 2.6459 40 1 3.7172 -0.7419 3.3980 41 1 6.4580 -3.2025 2.8180 42 1 5.6868 -2.9543 1.2331 43 1 7.2290 -2.1487 1.6084 44 1 8.0901 -0.3667 2.0245 45 1 8.0896 -1.1183 3.6380 46 1 10.0262 0.2399 4.5633 47 1 10.1997 0.6677 2.8412 48 1 9.7351 2.7102 5.0644 49 1 11.3430 2.2936 4.4183 50 1 10.2331 4.3307 3.3422 51 1 10.7441 3.0582 2.2097 52 1 6.9636 2.1311 2.4093 53 1 2.1078 -2.8135 0.8942 54 1 0.2784 -5.5778 1.2683 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700502113.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:41 Heat of formation + Delta-G solvation = -107.286157 kcal Electronic energy + Delta-G solvation = -30882.889101 eV Core-core repulsion = 26852.993228 eV Total energy + Delta-G solvation = -4029.895873 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.63983 -40.63010 -38.97450 -37.73719 -36.58579 -34.94130 -34.10147 -33.19962 -32.26776 -31.31868 -28.82135 -28.03304 -27.50948 -26.55109 -25.03818 -24.11311 -23.34652 -22.45739 -20.81521 -20.07915 -19.94100 -19.13412 -18.37480 -17.79237 -17.29921 -17.20476 -16.83043 -16.40425 -16.20838 -15.81181 -15.45334 -15.23414 -15.16443 -15.02227 -14.76954 -14.47494 -14.23196 -14.08118 -13.94260 -13.86613 -13.57332 -13.22702 -13.11044 -12.99655 -12.87901 -12.83841 -12.75694 -12.55674 -12.50952 -12.23145 -12.15882 -12.04315 -11.86919 -11.77905 -11.73832 -11.71310 -11.43985 -11.22756 -10.90647 -10.80560 -10.64745 -10.07194 -9.62852 -8.90145 -7.87904 -5.12491 1.48170 1.48619 1.54231 1.63455 1.64868 2.06439 2.37459 2.59316 3.44371 3.46454 3.62713 3.70656 3.88447 3.94488 3.96955 4.01902 4.18325 4.18935 4.26024 4.27167 4.35974 4.42996 4.49437 4.58894 4.64825 4.66089 4.71560 4.73787 4.76785 4.78386 4.89025 4.92826 4.98661 5.01094 5.02680 5.09701 5.13096 5.14459 5.15020 5.17456 5.31552 5.38610 5.40212 5.55877 5.58254 5.64534 5.72869 5.77206 6.34457 6.43202 6.51014 7.17381 7.23720 7.41903 8.15610 8.42119 9.35106 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016959 B = 0.002487 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.610748 B =11256.002270 C =12341.691296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C -0.137 4.137 4 C 0.184 3.816 5 H 0.031 0.969 6 C -0.118 4.118 7 C 0.130 3.870 8 N -0.612 5.612 9 C 0.069 3.931 10 C 0.497 3.503 11 O -0.584 6.584 12 C -0.143 4.143 13 C 0.150 3.850 14 H 0.070 0.930 15 C -0.126 4.126 16 C -0.119 4.119 17 C -0.130 4.130 18 C 0.506 3.494 19 O -0.623 6.623 20 N -0.708 5.708 21 N -0.725 5.725 22 C -0.215 4.215 23 H 0.069 0.931 24 C -0.072 4.072 25 N -0.966 5.966 26 Si 0.955 3.045 27 H -0.283 1.283 28 H -0.298 1.298 29 H -0.284 1.284 30 H 0.039 0.961 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.047 0.953 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.104 0.896 44 H 0.120 0.880 45 H 0.146 0.854 46 H 0.115 0.885 47 H 0.090 0.910 48 H 0.064 0.936 49 H 0.108 0.892 50 H 0.099 0.901 51 H 0.117 0.883 52 H 0.390 0.610 53 H 0.374 0.626 54 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.321 7.458 4.289 26.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.127 4.127 3 C -0.195 4.195 4 C 0.075 3.925 5 H 0.049 0.951 6 C -0.158 4.158 7 C 0.006 3.994 8 N -0.344 5.344 9 C -0.072 4.072 10 C 0.288 3.712 11 O -0.465 6.465 12 C -0.183 4.183 13 C 0.045 3.955 14 H 0.088 0.912 15 C -0.163 4.163 16 C -0.157 4.157 17 C -0.169 4.169 18 C 0.295 3.705 19 O -0.507 6.507 20 N -0.358 5.358 21 N -0.364 5.364 22 C -0.347 4.347 23 H 0.087 0.913 24 C -0.264 4.264 25 N -0.617 5.617 26 Si 0.786 3.214 27 H -0.210 1.210 28 H -0.224 1.224 29 H -0.210 1.210 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.122 0.878 44 H 0.138 0.862 45 H 0.164 0.836 46 H 0.133 0.867 47 H 0.108 0.892 48 H 0.083 0.917 49 H 0.126 0.874 50 H 0.118 0.882 51 H 0.135 0.865 52 H 0.225 0.775 53 H 0.206 0.794 54 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 24.848 8.364 4.387 26.583 hybrid contribution -2.074 -0.742 -0.093 2.204 sum 22.775 7.622 4.294 24.397 Atomic orbital electron populations 1.21748 0.95982 1.01701 0.99865 1.21640 0.95962 0.95894 0.99187 1.21821 1.00713 0.95493 1.01468 1.20336 0.91750 0.85385 0.95046 0.95074 1.22005 0.95347 1.00859 0.97544 1.21194 0.79292 1.01337 0.97552 1.48077 1.06456 1.19141 1.60693 1.22090 0.97798 0.87603 0.99758 1.21492 0.91797 0.81452 0.76503 1.90708 1.71642 1.35599 1.48545 1.22245 0.89256 1.00657 1.06166 1.20980 0.97429 0.83739 0.93351 0.91202 1.22011 0.90526 0.98781 1.05013 1.21678 1.03961 0.93685 0.96347 1.21697 0.90631 1.03436 1.01171 1.21092 0.89883 0.80368 0.79119 1.90730 1.76494 1.41048 1.42460 1.45898 1.17877 1.22337 1.49657 1.42513 1.17021 1.03467 1.73435 1.19390 0.93441 0.92043 1.29789 0.91310 1.25294 1.01283 0.96092 1.03752 1.69764 1.38251 0.99631 1.54092 0.85477 0.81399 0.76214 0.78324 1.20986 1.22400 1.21015 0.94223 0.93122 0.93007 0.92828 0.92545 0.92201 0.93376 0.91361 0.91908 0.91049 0.92652 0.90983 0.91501 0.87765 0.86157 0.83639 0.86659 0.89173 0.91714 0.87389 0.88228 0.86480 0.77480 0.79371 0.94334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.18 8.26 71.98 0.59 -4.59 16 2 C -0.11 -3.82 2.69 -10.79 -0.03 -3.85 16 3 C -0.14 -4.17 8.85 71.98 0.64 -3.53 16 4 C 0.18 7.22 2.02 44.99 0.09 7.31 16 5 H 0.03 1.33 8.08 -2.38 -0.02 1.31 16 6 C -0.12 -3.92 4.86 30.60 0.15 -3.77 16 7 C 0.13 4.20 5.29 86.38 0.46 4.66 16 8 N -0.61 -14.57 2.87 -846.76 -2.43 -17.00 16 9 C 0.07 1.08 10.24 127.77 1.31 2.39 16 10 C 0.50 11.50 7.32 87.66 0.64 12.14 16 11 O -0.58 -18.76 14.14 -3.05 -0.04 -18.81 16 12 C -0.14 -1.64 3.90 29.85 0.12 -1.52 16 13 C 0.15 1.99 2.64 45.10 0.12 2.11 16 14 H 0.07 1.15 7.94 -2.38 -0.02 1.13 16 15 C -0.13 -0.64 5.30 30.68 0.16 -0.48 16 16 C -0.12 -0.76 6.03 30.73 0.19 -0.58 16 17 C -0.13 -1.61 6.03 29.70 0.18 -1.43 16 18 C 0.51 11.82 7.71 87.71 0.68 12.50 16 19 O -0.62 -21.46 17.78 -3.02 -0.05 -21.52 16 20 N -0.71 -15.16 5.01 -446.65 -2.24 -17.40 16 21 N -0.72 -34.37 4.45 -322.93 -1.44 -35.81 16 22 C -0.21 -11.39 7.57 84.03 0.64 -10.76 16 23 H 0.07 3.63 7.40 -2.91 -0.02 3.61 16 24 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 25 N -0.97 -56.81 13.06 21.65 0.28 -56.53 16 26 Si 0.96 45.83 29.55 68.60 2.03 47.86 16 27 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 28 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 29 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 30 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.05 2.33 6.01 -2.39 -0.01 2.32 16 33 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.06 1.64 6.32 -2.38 -0.02 1.62 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.07 2.23 6.18 -2.39 -0.01 2.21 16 38 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 39 H 0.07 2.60 7.68 -2.39 -0.02 2.58 16 40 H 0.05 2.05 7.42 -2.39 -0.02 2.03 16 41 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 42 H 0.07 1.24 8.07 -2.38 -0.02 1.22 16 43 H 0.10 0.86 6.44 -2.39 -0.02 0.84 16 44 H 0.12 0.97 7.40 -2.39 -0.02 0.95 16 45 H 0.15 0.66 8.11 -2.38 -0.02 0.64 16 46 H 0.12 0.03 8.14 -2.38 -0.02 0.01 16 47 H 0.09 0.27 8.11 -2.39 -0.02 0.25 16 48 H 0.06 0.54 8.13 -2.39 -0.02 0.52 16 49 H 0.11 0.15 8.14 -2.38 -0.02 0.13 16 50 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.12 1.02 8.14 -2.39 -0.02 1.01 16 52 H 0.39 10.72 6.94 -92.71 -0.64 10.07 16 53 H 0.37 18.88 7.80 -92.71 -0.72 18.16 16 54 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -76.54 418.29 2.02 -74.52 By element: Atomic # 1 Polarization: 38.09 SS G_CDS: -0.48 Total: 37.61 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 6.39 Total: 7.07 kcal Atomic # 7 Polarization: -120.91 SS G_CDS: -5.82 Total: -126.74 kcal Atomic # 8 Polarization: -40.23 SS G_CDS: -0.10 Total: -40.33 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -76.54 2.02 -74.52 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700502113.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.763 kcal (2) G-P(sol) polarization free energy of solvation -76.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds