Wall clock time and date at job start Tue Mar 31 2020 22:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46912 * 2 1 4 4 C 1.52998 * 109.46935 * 185.20428 * 3 2 1 5 5 H 1.09004 * 109.46891 * 55.54224 * 4 3 2 6 6 C 1.53001 * 109.47514 * 295.54079 * 4 3 2 7 7 C 1.53000 * 109.46762 * 301.08895 * 6 4 3 8 8 C 1.50703 * 109.46945 * 175.53904 * 4 3 2 9 9 O 1.21281 * 119.99971 * 24.47272 * 8 4 3 10 10 N 1.34773 * 120.00157 * 204.46816 * 8 4 3 11 11 C 1.47028 * 125.64797 * 355.25200 * 10 8 4 12 12 C 1.54368 * 107.29011 * 181.05719 * 11 10 8 13 13 C 1.55155 * 102.92047 * 22.13822 * 12 11 10 14 14 H 1.08999 * 111.00472 * 82.64048 * 13 12 11 15 15 C 1.53000 * 111.00661 * 206.45431 * 13 12 11 16 16 N 1.46900 * 109.47069 * 290.42140 * 15 13 12 17 17 C 1.46902 * 110.99995 * 179.97438 * 16 15 13 18 18 C 1.50704 * 109.47057 * 179.97438 * 17 16 15 19 19 O 1.21291 * 120.00027 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99694 * 180.02562 * 18 17 16 21 21 C 1.37098 * 119.99652 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99957 * 359.71949 * 21 20 18 23 23 C 1.38956 * 119.99952 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99826 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99808 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47133 * 89.99826 * 25 23 21 27 27 H 1.48504 * 109.46966 * 210.00072 * 25 23 21 28 28 H 1.48503 * 109.47308 * 329.99636 * 25 23 21 29 29 C 1.47424 * 125.65151 * 175.20924 * 10 8 4 30 30 H 1.09004 * 109.47542 * 59.99735 * 1 2 3 31 31 H 1.09005 * 109.47202 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47415 * 299.99371 * 1 2 3 33 33 H 1.09001 * 109.46907 * 240.00770 * 2 1 3 34 34 H 1.08998 * 109.47149 * 120.00336 * 2 1 3 35 35 H 1.08998 * 109.46533 * 65.20886 * 3 2 1 36 36 H 1.08995 * 109.47259 * 305.21142 * 3 2 1 37 37 H 1.08994 * 109.46746 * 61.08969 * 6 4 3 38 38 H 1.08997 * 109.47232 * 181.09025 * 6 4 3 39 39 H 1.08999 * 109.47389 * 65.67870 * 7 6 4 40 40 H 1.09003 * 109.46530 * 185.67386 * 7 6 4 41 41 H 1.08992 * 109.47283 * 305.66965 * 7 6 4 42 42 H 1.08998 * 109.88355 * 300.44250 * 11 10 8 43 43 H 1.08997 * 109.88112 * 61.60449 * 11 10 8 44 44 H 1.09004 * 110.70191 * 263.79617 * 12 11 10 45 45 H 1.08995 * 110.75490 * 140.50565 * 12 11 10 46 46 H 1.08995 * 109.47668 * 170.41729 * 15 13 12 47 47 H 1.09004 * 109.47058 * 50.41793 * 15 13 12 48 48 H 1.00899 * 110.99480 * 303.94509 * 16 15 13 49 49 H 1.08999 * 109.47473 * 59.99601 * 17 16 15 50 50 H 1.09002 * 109.47078 * 299.99930 * 17 16 15 51 51 H 0.97001 * 120.00050 * 359.97438 * 20 18 17 52 52 H 0.97004 * 119.99545 * 180.02562 * 24 23 21 53 53 H 1.08996 * 110.36264 * 37.06814 * 29 10 8 54 54 H 1.09000 * 110.37020 * 274.74598 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5643 1.4445 -0.1308 5 1 3.8530 0.8894 -1.0234 6 6 4.1830 0.7842 1.1029 7 6 3.7556 1.5474 2.3581 8 6 4.0571 2.8644 -0.2410 9 8 3.3929 3.7736 0.2097 10 7 5.2361 3.1240 -0.8403 11 6 6.1836 2.1167 -1.3396 12 6 7.3969 2.8754 -1.9187 13 6 7.3198 4.2502 -1.2038 14 1 7.7724 4.2016 -0.2134 15 6 7.9734 5.3453 -2.0490 16 7 9.4268 5.1344 -2.0847 17 6 10.0893 6.1692 -2.8898 18 6 11.5757 5.9207 -2.9027 19 8 12.0376 4.9749 -2.3001 20 7 12.3916 6.7500 -3.5830 21 6 13.7439 6.5242 -3.5943 22 1 14.1556 5.6844 -3.0543 23 6 14.5851 7.3789 -4.2961 24 7 15.8813 7.1628 -4.3065 25 14 13.8737 8.8360 -5.2236 26 1 13.8283 10.0190 -4.3272 27 1 14.7278 9.1387 -6.4001 28 1 12.4993 8.5084 -5.6810 29 6 5.7888 4.4649 -1.1046 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.7547 1.9286 0.9330 36 1 1.6024 1.9826 -0.8396 37 1 3.8417 -0.2486 1.1717 38 1 5.2696 0.8030 1.0186 39 1 2.6795 1.4438 2.4976 40 1 4.2752 1.1402 3.2255 41 1 4.0075 2.6018 2.2457 42 1 6.5059 1.4731 -0.5211 43 1 5.7125 1.5193 -2.1201 44 1 7.2972 2.9955 -2.9974 45 1 8.3267 2.3635 -1.6708 46 1 7.7584 6.3198 -1.6106 47 1 7.5758 5.3075 -3.0632 48 1 9.8102 5.1008 -1.1520 49 1 9.8890 7.1496 -2.4576 50 1 9.7063 6.1367 -3.9098 51 1 12.0222 7.5066 -4.0646 52 1 16.4686 7.7597 -4.7961 53 1 5.5529 5.1410 -0.2830 54 1 5.3992 4.8575 -2.0439 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713357997.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:24 Heat of formation + Delta-G solvation = -115.030329 kcal Electronic energy + Delta-G solvation = -29344.994424 eV Core-core repulsion = 25314.762738 eV Total energy + Delta-G solvation = -4030.231686 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.43997 -40.29463 -39.16635 -37.25183 -36.63260 -35.84040 -33.88179 -33.73274 -32.80207 -30.46079 -29.90648 -28.75190 -26.80746 -25.76542 -24.63297 -23.90441 -23.28450 -21.57941 -21.32518 -21.14215 -20.20644 -19.66394 -18.08627 -17.79812 -17.22961 -17.02505 -16.76240 -16.57450 -16.53775 -15.80506 -15.59903 -15.23825 -15.07808 -14.88267 -14.76267 -14.46251 -14.35475 -14.29417 -14.14838 -13.81165 -13.61136 -13.45374 -13.39102 -13.22123 -12.98612 -12.86718 -12.72827 -12.64673 -12.40559 -12.18530 -12.06429 -11.96695 -11.93448 -11.83597 -11.77582 -11.60278 -11.51546 -11.49929 -11.31095 -10.66540 -10.41663 -10.23727 -9.65207 -9.29611 -8.40433 -6.01227 1.31263 1.36302 1.45351 1.60632 1.96722 1.97669 2.23830 2.72773 3.16454 3.28916 3.50450 3.67003 3.74024 3.80654 3.90932 3.95685 4.17831 4.20327 4.25651 4.29401 4.34572 4.36959 4.40350 4.42414 4.51416 4.58676 4.59502 4.64434 4.69005 4.75460 4.75957 4.79478 4.90605 4.92781 4.96338 5.04836 5.06317 5.15450 5.17051 5.21395 5.25270 5.31281 5.37395 5.41735 5.42335 5.53565 5.55136 5.91418 6.05393 6.38835 6.52004 6.60930 6.89373 7.14334 7.41332 7.97959 8.77187 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.033538 B = 0.001572 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.677898 B =17809.865753 C =18057.016231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.100 4.100 4 C -0.099 4.099 5 H 0.111 0.889 6 C -0.109 4.109 7 C -0.156 4.156 8 C 0.528 3.472 9 O -0.584 6.584 10 N -0.620 5.620 11 C 0.097 3.903 12 C -0.112 4.112 13 C -0.090 4.090 14 H 0.078 0.922 15 C 0.075 3.925 16 N -0.680 5.680 17 C 0.062 3.938 18 C 0.449 3.551 19 O -0.613 6.613 20 N -0.592 5.592 21 C -0.329 4.329 22 H 0.055 0.945 23 C -0.014 4.014 24 N -0.935 5.935 25 Si 0.964 3.036 26 H -0.258 1.258 27 H -0.276 1.276 28 H -0.230 1.230 29 C 0.112 3.888 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.030 0.970 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.042 0.958 47 H 0.087 0.913 48 H 0.344 0.656 49 H 0.075 0.925 50 H 0.115 0.885 51 H 0.390 0.610 52 H 0.279 0.721 53 H 0.062 0.938 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.424 -10.803 5.375 33.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.138 4.138 4 C -0.120 4.120 5 H 0.129 0.871 6 C -0.147 4.147 7 C -0.213 4.213 8 C 0.319 3.681 9 O -0.464 6.464 10 N -0.353 5.353 11 C -0.025 4.025 12 C -0.150 4.150 13 C -0.110 4.110 14 H 0.096 0.904 15 C -0.054 4.054 16 N -0.313 5.313 17 C -0.070 4.070 18 C 0.237 3.763 19 O -0.498 6.498 20 N -0.234 5.234 21 C -0.458 4.458 22 H 0.074 0.926 23 C -0.213 4.213 24 N -0.575 5.575 25 Si 0.784 3.216 26 H -0.183 1.183 27 H -0.201 1.201 28 H -0.154 1.154 29 C -0.011 4.011 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.118 0.882 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.049 0.951 42 H 0.098 0.902 43 H 0.106 0.894 44 H 0.100 0.900 45 H 0.101 0.899 46 H 0.060 0.940 47 H 0.106 0.894 48 H 0.162 0.838 49 H 0.093 0.907 50 H 0.133 0.867 51 H 0.225 0.775 52 H 0.088 0.912 53 H 0.081 0.919 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -31.366 -11.384 5.467 33.812 hybrid contribution 0.532 1.835 0.149 1.916 sum -30.834 -9.549 5.616 32.763 Atomic orbital electron populations 1.21780 0.95772 1.02061 1.01562 1.21547 0.95957 0.95077 1.03041 1.21457 0.92225 0.98034 1.02117 1.21437 0.97469 0.91091 1.01965 0.87122 1.21503 1.00626 1.00506 0.92054 1.21844 1.01942 0.99383 0.98162 1.20951 0.79175 0.92261 0.75751 1.90668 1.57351 1.49042 1.49376 1.48656 1.19331 1.08663 1.58698 1.22317 0.89415 0.91203 0.99532 1.22561 0.97298 0.94480 1.00617 1.22212 0.93104 0.95935 0.99710 0.90379 1.21901 0.86302 0.96469 1.00753 1.60037 1.03661 1.48264 1.19309 1.21625 0.88868 0.94962 1.01564 1.21013 0.89870 0.83554 0.81896 1.90543 1.78297 1.32862 1.48082 1.42044 1.06106 1.27479 1.47748 1.19018 0.82103 1.13038 1.31691 0.92642 1.26102 0.95252 1.01697 0.98233 1.69807 1.04523 1.40028 1.43183 0.85373 0.79999 0.77759 0.78436 1.18277 1.20119 1.15350 1.22163 0.92713 0.85022 1.01229 0.93137 0.91745 0.93182 0.90924 0.90772 0.92139 0.93120 0.88235 0.91195 0.92076 0.91770 0.95072 0.90214 0.89391 0.89966 0.89904 0.93958 0.89437 0.83794 0.90685 0.86725 0.77480 0.91186 0.91903 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 71.98 0.71 -0.73 16 2 C -0.12 -1.07 5.54 30.59 0.17 -0.90 16 3 C -0.10 -1.41 3.88 30.59 0.12 -1.29 16 4 C -0.10 -1.31 1.96 -11.54 -0.02 -1.34 16 5 H 0.11 1.02 7.36 -2.39 -0.02 1.01 16 6 C -0.11 -1.21 5.42 30.59 0.17 -1.04 16 7 C -0.16 -2.31 9.21 71.98 0.66 -1.65 16 8 C 0.53 10.86 5.99 87.66 0.52 11.39 16 9 O -0.58 -16.81 15.67 -3.03 -0.05 -16.86 16 10 N -0.62 -10.97 3.33 -811.70 -2.70 -13.67 16 11 C 0.10 1.23 6.27 86.74 0.54 1.77 16 12 C -0.11 -1.71 6.32 31.80 0.20 -1.51 16 13 C -0.09 -1.52 3.21 -9.40 -0.03 -1.55 16 14 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 15 C 0.07 1.35 5.13 86.30 0.44 1.79 16 16 N -0.68 -17.91 6.02 -517.92 -3.12 -21.03 16 17 C 0.06 1.77 6.17 85.56 0.53 2.29 16 18 C 0.45 19.62 7.82 87.66 0.69 20.30 16 19 O -0.61 -33.16 15.78 -3.06 -0.05 -33.21 16 20 N -0.59 -27.35 5.09 -306.98 -1.56 -28.92 16 21 C -0.33 -19.11 10.16 84.04 0.85 -18.26 16 22 H 0.06 3.84 7.39 -2.91 -0.02 3.82 16 23 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 24 N -0.93 -56.05 13.96 21.66 0.30 -55.75 16 25 Si 0.96 38.29 27.74 68.60 1.90 40.19 16 26 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 27 H -0.28 -10.93 7.11 99.48 0.71 -10.23 16 28 H -0.23 -7.63 6.52 99.48 0.65 -6.98 16 29 C 0.11 2.00 6.40 86.86 0.56 2.56 16 30 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.07 0.55 6.84 -2.39 -0.02 0.54 16 35 H 0.06 1.06 6.18 -2.39 -0.01 1.04 16 36 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.10 0.69 6.72 -2.39 -0.02 0.68 16 38 H 0.07 0.74 6.95 -2.39 -0.02 0.73 16 39 H 0.06 0.87 6.63 -2.39 -0.02 0.86 16 40 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.03 0.64 6.56 -2.39 -0.02 0.63 16 42 H 0.08 0.87 6.96 -2.39 -0.02 0.85 16 43 H 0.09 0.80 7.80 -2.39 -0.02 0.79 16 44 H 0.08 1.24 7.97 -2.39 -0.02 1.22 16 45 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.09 1.40 8.04 -2.38 -0.02 1.38 16 48 H 0.34 9.92 8.43 -89.69 -0.76 9.16 16 49 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 51 H 0.39 14.81 5.76 -92.71 -0.53 14.28 16 52 H 0.28 15.27 8.31 -92.70 -0.77 14.50 16 53 H 0.06 1.31 7.99 -2.39 -0.02 1.30 16 54 H 0.08 1.26 8.04 -2.39 -0.02 1.24 16 Total: -1.00 -79.30 420.66 0.85 -78.45 By element: Atomic # 1 Polarization: 39.73 SS G_CDS: -0.46 Total: 39.27 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 6.58 Total: 11.52 kcal Atomic # 7 Polarization: -112.29 SS G_CDS: -7.08 Total: -119.37 kcal Atomic # 8 Polarization: -49.97 SS G_CDS: -0.10 Total: -50.06 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 1.90 Total: 40.19 kcal Total: -79.30 0.85 -78.45 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713357997.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.579 kcal (2) G-P(sol) polarization free energy of solvation -79.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds