Wall clock time and date at job start Tue Mar 31 2020 23:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47497 * 2 1 4 4 C 1.53007 * 109.47268 * 119.99960 * 2 1 3 5 5 N 1.46892 * 109.47295 * 294.49837 * 4 2 1 6 6 C 1.47012 * 111.00198 * 210.26082 * 5 4 2 7 7 C 1.53100 * 109.25770 * 177.60672 * 6 5 4 8 8 O 1.43014 * 109.25933 * 56.85130 * 7 6 5 9 9 C 1.43019 * 113.73879 * 301.32922 * 8 7 6 10 10 C 1.47017 * 110.99819 * 86.62568 * 5 4 2 11 11 C 1.50696 * 109.47145 * 239.99879 * 2 1 3 12 12 O 1.21280 * 120.00295 * 239.99889 * 11 2 1 13 13 N 1.34779 * 119.99826 * 59.99868 * 11 2 1 14 14 C 1.46498 * 120.00040 * 179.97438 * 13 11 2 15 15 C 1.53007 * 109.47185 * 180.02562 * 14 13 11 16 16 H 1.08991 * 109.47136 * 295.00406 * 15 14 13 17 17 N 1.46499 * 109.46726 * 55.00283 * 15 14 13 18 18 C 1.36941 * 119.99896 * 204.99738 * 17 15 14 19 19 H 1.07999 * 119.99368 * 0.02562 * 18 17 15 20 20 C 1.38807 * 120.00066 * 179.97438 * 18 17 15 21 21 N 1.31625 * 120.00294 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99927 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46833 * 60.00678 * 22 20 18 24 24 H 1.48502 * 109.46976 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47293 * 300.00423 * 22 20 18 26 26 C 1.53006 * 109.47092 * 175.00016 * 15 14 13 27 27 C 1.53001 * 117.49818 * 248.74821 * 26 15 14 28 28 C 1.52994 * 117.49665 * 180.08884 * 26 15 14 29 29 H 1.09004 * 109.46733 * 312.20682 * 1 2 3 30 30 H 1.08997 * 109.47076 * 72.20453 * 1 2 3 31 31 H 1.09001 * 109.47311 * 192.21128 * 1 2 3 32 32 H 1.09001 * 109.47388 * 175.09736 * 3 2 1 33 33 H 1.09001 * 109.47033 * 295.10042 * 3 2 1 34 34 H 1.09005 * 109.47208 * 55.10142 * 3 2 1 35 35 H 1.09005 * 109.46976 * 174.49697 * 4 2 1 36 36 H 1.09002 * 109.46584 * 54.50333 * 4 2 1 37 37 H 1.08989 * 109.50962 * 297.54661 * 6 5 4 38 38 H 1.09000 * 109.50148 * 57.67740 * 6 5 4 39 39 H 1.09004 * 109.50962 * 296.91673 * 7 6 5 40 40 H 1.09003 * 109.54212 * 176.80667 * 7 6 5 41 41 H 1.08995 * 109.50682 * 298.73417 * 9 8 7 42 42 H 1.08995 * 109.54152 * 178.62405 * 9 8 7 43 43 H 1.09001 * 109.50871 * 302.32957 * 10 5 4 44 44 H 1.08999 * 109.50486 * 62.41824 * 10 5 4 45 45 H 0.96994 * 119.99936 * 0.02562 * 13 11 2 46 46 H 1.09002 * 109.47427 * 300.00442 * 14 13 11 47 47 H 1.08998 * 109.47209 * 60.00428 * 14 13 11 48 48 H 0.97000 * 120.00442 * 25.00446 * 17 15 14 49 49 H 0.96999 * 120.00140 * 179.97438 * 21 20 18 50 50 H 1.09000 * 115.54978 * 34.42109 * 26 15 14 51 51 H 1.08998 * 117.49723 * 0.02562 * 27 26 15 52 52 H 1.08998 * 117.49551 * 145.02286 * 27 26 15 53 53 H 1.09005 * 117.49788 * 214.98293 * 28 26 15 54 54 H 1.09004 * 117.50308 * 0.02562 * 28 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6618 0.0436 2.4450 6 6 2.6466 -0.1398 3.5210 7 6 2.2464 0.7192 4.7235 8 8 0.9229 0.3671 5.1352 9 6 -0.0620 0.5341 4.1117 10 6 0.3148 -0.3267 2.9030 11 6 2.0323 -0.7104 -1.2304 12 8 2.7296 -1.6965 -1.1192 13 7 1.7066 -0.2500 -2.4545 14 6 2.1954 -0.9402 -3.6507 15 6 1.6858 -0.2187 -4.9000 16 1 0.5995 -0.2956 -4.9463 17 7 2.0733 1.1929 -4.8408 18 6 1.3459 2.1318 -5.5224 19 1 0.4863 1.8316 -6.1032 20 6 1.7128 3.4693 -5.4659 21 7 2.7601 3.8352 -4.7576 22 14 0.7209 4.7500 -6.3963 23 1 -0.6811 4.7416 -5.9068 24 1 1.3149 6.0929 -6.1749 25 1 0.7407 4.4335 -7.8470 26 6 2.2963 -0.8633 -6.1461 27 6 3.3118 -0.0406 -6.9416 28 6 1.9089 -0.2787 -7.5057 29 1 -0.3633 0.6904 0.7613 30 1 -0.3633 0.3141 -0.9785 31 1 -0.3634 -1.0044 0.2174 32 1 3.1265 1.4437 0.0878 33 1 1.7502 1.9303 -0.9306 34 1 1.6068 1.9810 0.8429 35 1 3.1256 -0.8074 1.2013 36 1 1.5985 -1.7166 1.2998 37 1 2.6727 -1.1888 3.8157 38 1 3.6320 0.1645 3.1682 39 1 2.2724 1.7723 4.4433 40 1 2.9417 0.5438 5.5445 41 1 -0.1032 1.5818 3.8138 42 1 -1.0364 0.2246 4.4894 43 1 -0.4019 -0.1590 2.0991 44 1 0.3034 -1.3790 3.1871 45 1 1.1493 0.5389 -2.5435 46 1 3.2854 -0.9398 -3.6506 47 1 1.8325 -1.9680 -3.6509 48 1 2.8452 1.4625 -4.3189 49 1 3.0167 4.7698 -4.7184 50 1 2.4557 -1.9401 -6.0882 51 1 3.5452 0.9597 -6.5770 52 1 4.1390 -0.5762 -7.4074 53 1 1.8137 -0.9707 -8.3425 54 1 1.2194 0.5656 -7.5127 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713868332.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:08 Heat of formation + Delta-G solvation = -54.280819 kcal Electronic energy + Delta-G solvation = -31291.388807 eV Core-core repulsion = 27263.791418 eV Total energy + Delta-G solvation = -4027.597389 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.46200 -40.32633 -39.19883 -37.56401 -35.93008 -35.14520 -34.76457 -32.48708 -32.15493 -29.85245 -29.05628 -28.25039 -25.93209 -25.54880 -24.80216 -24.51463 -23.09268 -22.54206 -21.35938 -20.91835 -20.03421 -19.12578 -17.91110 -17.32847 -17.14508 -17.10088 -16.76857 -16.40152 -16.27373 -16.07235 -15.96197 -15.70992 -15.36031 -15.22958 -14.85230 -14.64281 -14.37843 -14.30028 -14.01465 -13.70647 -13.51512 -13.15628 -12.98905 -12.89825 -12.81653 -12.63214 -12.60664 -12.57507 -12.28336 -12.16624 -12.10913 -11.96541 -11.93386 -11.75222 -11.56750 -11.43130 -11.02010 -10.93055 -10.72066 -10.61989 -10.44765 -9.97194 -9.38395 -8.96484 -7.85198 -5.12774 1.51570 1.53103 1.57682 1.67755 2.18836 2.60630 2.82757 3.01276 3.14441 3.49339 3.64397 3.76824 3.89489 3.90837 3.96542 4.01076 4.05588 4.17277 4.23660 4.26581 4.30495 4.34485 4.38545 4.50590 4.58031 4.60178 4.61040 4.67451 4.70590 4.74024 4.77657 4.82864 4.86651 4.94824 4.94927 4.96977 4.99875 5.05575 5.08759 5.19188 5.26584 5.33133 5.40739 5.43751 5.58280 5.68303 5.68931 5.90545 5.98486 6.21034 6.34104 6.63083 7.27529 7.43048 8.13295 8.39251 9.36572 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013839 B = 0.002774 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.804238 B =10090.312741 C =11353.322866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.064 4.064 3 C -0.117 4.117 4 C 0.091 3.909 5 N -0.532 5.532 6 C 0.018 3.982 7 C 0.066 3.934 8 O -0.406 6.406 9 C 0.062 3.938 10 C 0.001 3.999 11 C 0.518 3.482 12 O -0.590 6.590 13 N -0.706 5.706 14 C 0.127 3.873 15 C 0.194 3.806 16 H 0.060 0.940 17 N -0.719 5.719 18 C -0.220 4.220 19 H 0.075 0.925 20 C -0.062 4.062 21 N -0.961 5.961 22 Si 0.954 3.046 23 H -0.279 1.279 24 H -0.304 1.304 25 H -0.286 1.286 26 C -0.168 4.168 27 C -0.173 4.173 28 C -0.170 4.170 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.040 0.960 37 H 0.036 0.964 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.112 0.888 41 H 0.063 0.937 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.035 0.965 45 H 0.410 0.590 46 H 0.048 0.952 47 H 0.078 0.922 48 H 0.374 0.626 49 H 0.247 0.753 50 H 0.114 0.886 51 H 0.077 0.923 52 H 0.089 0.911 53 H 0.101 0.899 54 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.491 -8.837 14.365 17.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.068 4.068 3 C -0.175 4.175 4 C -0.038 4.038 5 N -0.257 5.257 6 C -0.110 4.110 7 C -0.011 4.011 8 O -0.325 6.325 9 C -0.014 4.014 10 C -0.127 4.127 11 C 0.305 3.695 12 O -0.471 6.471 13 N -0.357 5.357 14 C 0.003 3.997 15 C 0.085 3.915 16 H 0.078 0.922 17 N -0.359 5.359 18 C -0.351 4.351 19 H 0.093 0.907 20 C -0.255 4.255 21 N -0.612 5.612 22 Si 0.786 3.214 23 H -0.205 1.205 24 H -0.231 1.231 25 H -0.213 1.213 26 C -0.190 4.190 27 C -0.211 4.211 28 C -0.207 4.207 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.108 0.892 39 H 0.080 0.920 40 H 0.130 0.870 41 H 0.081 0.919 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.053 0.947 45 H 0.247 0.753 46 H 0.066 0.934 47 H 0.096 0.904 48 H 0.206 0.794 49 H 0.055 0.945 50 H 0.132 0.868 51 H 0.096 0.904 52 H 0.108 0.892 53 H 0.119 0.881 54 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.201 -9.008 14.388 17.754 hybrid contribution 0.182 0.577 -0.860 1.052 sum -5.019 -8.430 13.528 16.711 Atomic orbital electron populations 1.22088 0.91146 1.02984 1.03484 1.20625 0.98392 0.96771 0.91029 1.21610 1.00421 0.92881 1.02600 1.21720 0.99963 0.93707 0.88387 1.62052 1.02644 1.56281 1.04677 1.22851 0.96683 0.99111 0.92390 1.22747 0.83890 0.98206 0.96258 1.87948 1.17721 1.88285 1.38531 1.22802 0.92169 0.99540 0.86921 1.23307 0.91716 0.98030 0.99618 1.20992 0.79283 0.83734 0.85505 1.90627 1.40301 1.28589 1.87587 1.45959 1.52755 1.31892 1.05082 1.21448 0.98424 0.95908 0.83953 1.20107 0.97170 0.83736 0.90530 0.92173 1.42497 1.33953 1.01117 1.58306 1.19349 1.06923 0.87447 1.21415 0.90728 1.25261 0.99351 0.98835 1.02082 1.69786 1.29080 1.15829 1.46483 0.85501 0.78466 0.78871 0.78603 1.20516 1.23093 1.21300 1.23065 1.04187 0.98358 0.93359 1.22764 0.92556 1.01496 1.04243 1.22843 0.98674 1.02838 0.96322 0.88823 0.92165 0.91805 0.93975 0.93498 0.89264 0.91839 0.94173 0.94586 0.89208 0.91970 0.86966 0.91861 0.86866 0.87084 0.94707 0.75316 0.93353 0.90413 0.79362 0.94451 0.86848 0.90415 0.89246 0.88118 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 6.96 71.98 0.50 -2.30 16 2 C -0.06 -1.62 0.69 -52.93 -0.04 -1.65 16 3 C -0.12 -3.09 8.09 71.98 0.58 -2.51 16 4 C 0.09 2.18 3.59 86.31 0.31 2.49 16 5 N -0.53 -10.49 3.67 -895.21 -3.28 -13.78 16 6 C 0.02 0.32 5.52 86.32 0.48 0.80 16 7 C 0.07 1.06 7.01 72.02 0.50 1.57 16 8 O -0.41 -7.85 10.83 -148.98 -1.61 -9.47 16 9 C 0.06 0.96 7.01 72.02 0.50 1.47 16 10 C 0.00 0.01 5.14 86.32 0.44 0.46 16 11 C 0.52 16.52 6.48 87.66 0.57 17.09 16 12 O -0.59 -22.42 15.91 -3.03 -0.05 -22.47 16 13 N -0.71 -22.52 5.05 -463.05 -2.34 -24.86 16 14 C 0.13 4.15 5.22 86.38 0.45 4.60 16 15 C 0.19 6.77 2.86 45.00 0.13 6.89 16 16 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 17 N -0.72 -31.28 3.08 -322.93 -0.99 -32.27 16 18 C -0.22 -10.68 8.15 84.03 0.69 -10.00 16 19 H 0.07 3.54 6.91 -2.91 -0.02 3.52 16 20 C -0.06 -3.27 5.50 84.86 0.47 -2.81 16 21 N -0.96 -54.55 13.06 21.65 0.28 -54.26 16 22 Si 0.95 43.53 29.55 68.60 2.03 45.55 16 23 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 24 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 25 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 26 C -0.17 -5.46 5.71 -10.79 -0.06 -5.52 16 27 C -0.17 -6.26 9.74 30.62 0.30 -5.96 16 28 C -0.17 -5.65 9.87 30.62 0.30 -5.35 16 29 H 0.09 1.56 6.08 -2.38 -0.01 1.55 16 30 H 0.06 1.27 7.26 -2.39 -0.02 1.25 16 31 H 0.06 1.19 7.82 -2.39 -0.02 1.17 16 32 H 0.04 1.19 8.14 -2.39 -0.02 1.18 16 33 H 0.05 1.39 7.43 -2.39 -0.02 1.38 16 34 H 0.09 2.07 7.59 -2.38 -0.02 2.05 16 35 H 0.06 1.73 7.48 -2.38 -0.02 1.71 16 36 H 0.04 1.01 7.75 -2.39 -0.02 0.99 16 37 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.09 1.56 8.00 -2.39 -0.02 1.55 16 39 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.11 1.64 4.24 -2.39 -0.01 1.63 16 44 H 0.03 0.64 8.11 -2.39 -0.02 0.62 16 45 H 0.41 13.30 6.83 -92.71 -0.63 12.67 16 46 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 48 H 0.37 18.32 7.80 -92.71 -0.72 17.60 16 49 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 50 H 0.11 3.11 8.11 -2.39 -0.02 3.09 16 51 H 0.08 3.51 6.68 -2.39 -0.02 3.49 16 52 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 53 H 0.10 2.78 8.14 -2.38 -0.02 2.76 16 54 H 0.08 3.03 6.22 -2.38 -0.01 3.01 16 Total: -1.00 -60.81 412.13 -0.30 -61.11 By element: Atomic # 1 Polarization: 51.64 SS G_CDS: -0.46 Total: 51.18 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 6.12 Total: -0.74 kcal Atomic # 7 Polarization: -118.84 SS G_CDS: -6.33 Total: -125.17 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -1.66 Total: -31.94 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -60.81 -0.30 -61.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713868332.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.828 kcal (2) G-P(sol) polarization free energy of solvation -60.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds