Wall clock time and date at job start Tue Mar 31 2020 23:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47143 * 2 1 4 4 C 1.52995 * 109.47374 * 239.99337 * 2 1 3 5 5 N 1.46902 * 109.47030 * 316.69484 * 4 2 1 6 6 C 1.47014 * 111.00374 * 290.15017 * 5 4 2 7 7 C 1.53098 * 109.25930 * 177.60797 * 6 5 4 8 8 O 1.43016 * 109.25640 * 56.84833 * 7 6 5 9 9 C 1.43014 * 113.74186 * 301.32812 * 8 7 6 10 10 C 1.47020 * 110.99939 * 166.51437 * 5 4 2 11 11 C 1.50707 * 109.46538 * 119.99327 * 2 1 3 12 12 O 1.21283 * 119.99473 * 138.42825 * 11 2 1 13 13 N 1.34775 * 120.00234 * 318.43349 * 11 2 1 14 14 C 1.46504 * 119.99884 * 180.02562 * 13 11 2 15 15 C 1.52993 * 109.47060 * 179.97438 * 14 13 11 16 16 N 1.46498 * 109.47455 * 179.97438 * 15 14 13 17 17 C 1.36935 * 120.00541 * 270.28121 * 16 15 14 18 18 H 1.07994 * 120.00094 * 147.65632 * 17 16 15 19 19 C 1.38811 * 119.99592 * 327.66461 * 17 16 15 20 20 N 1.31623 * 120.00260 * 334.16171 * 19 17 16 21 21 Si 1.86797 * 120.00120 * 154.16395 * 19 17 16 22 22 H 1.48507 * 109.47029 * 89.99996 * 21 19 17 23 23 H 1.48497 * 109.47384 * 209.99552 * 21 19 17 24 24 H 1.48500 * 109.47279 * 329.99927 * 21 19 17 25 25 C 1.46508 * 119.99706 * 89.99799 * 16 15 14 26 26 C 1.52998 * 117.49919 * 182.77825 * 25 16 15 27 27 C 1.53000 * 117.49652 * 114.12256 * 25 16 15 28 28 H 1.09003 * 109.47332 * 302.32546 * 1 2 3 29 29 H 1.09008 * 109.46790 * 62.32027 * 1 2 3 30 30 H 1.08995 * 109.47525 * 182.32094 * 1 2 3 31 31 H 1.09008 * 109.47053 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46930 * 299.99178 * 3 2 1 33 33 H 1.09001 * 109.47740 * 59.99602 * 3 2 1 34 34 H 1.08998 * 109.47377 * 76.69317 * 4 2 1 35 35 H 1.09005 * 109.47190 * 196.69584 * 4 2 1 36 36 H 1.09007 * 109.50425 * 297.54430 * 6 5 4 37 37 H 1.08998 * 109.50783 * 57.66804 * 6 5 4 38 38 H 1.08996 * 109.50355 * 296.91206 * 7 6 5 39 39 H 1.09001 * 109.53830 * 176.80097 * 7 6 5 40 40 H 1.09004 * 109.50526 * 298.74083 * 9 8 7 41 41 H 1.08999 * 109.54716 * 178.62793 * 9 8 7 42 42 H 1.09001 * 109.50289 * 302.32666 * 10 5 4 43 43 H 1.08999 * 109.50371 * 62.41137 * 10 5 4 44 44 H 0.96993 * 120.00305 * 359.97438 * 13 11 2 45 45 H 1.08998 * 109.46719 * 59.99787 * 14 13 11 46 46 H 1.08996 * 109.47157 * 299.99741 * 14 13 11 47 47 H 1.09004 * 109.46864 * 59.99870 * 15 14 13 48 48 H 1.08996 * 109.47334 * 300.00135 * 15 14 13 49 49 H 0.96993 * 120.00469 * 185.04622 * 20 19 17 50 50 H 1.08996 * 115.55210 * 328.45597 * 25 16 15 51 51 H 1.09005 * 117.49696 * 0.02562 * 26 25 16 52 52 H 1.08998 * 117.49972 * 145.01702 * 26 25 16 53 53 H 1.08999 * 117.49941 * 214.98017 * 27 25 16 54 54 H 1.08999 * 117.49856 * 359.97438 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 1.2531 -1.9429 -1.4648 6 6 1.5472 -2.9482 -0.4332 7 6 0.6645 -4.1783 -0.6606 8 8 0.8839 -4.6785 -1.9823 9 6 0.6064 -3.7256 -3.0120 10 6 1.4886 -2.4910 -2.8085 11 6 2.0322 -0.7103 1.2306 12 8 2.9752 -1.4688 1.1505 13 7 1.4335 -0.5027 2.4201 14 6 1.9221 -1.1929 3.6165 15 6 1.0749 -0.7838 4.8230 16 7 1.5630 -1.4743 6.0192 17 6 1.0532 -2.6989 6.3590 18 1 1.6804 -3.4273 6.8513 19 6 -0.2699 -3.0041 6.0705 20 7 -1.1585 -2.0396 5.9587 21 14 -0.7893 -4.7837 5.8409 22 1 -1.2034 -5.3512 7.1493 23 1 -1.9286 -4.8483 4.8907 24 1 0.3511 -5.5665 5.3005 25 6 2.6012 -0.8574 6.8487 26 6 3.1152 -1.6568 8.0477 27 6 2.2148 -0.4388 8.2687 28 1 -0.3634 0.5495 0.8684 29 1 -0.3633 0.4774 -0.9101 30 1 -0.3634 -1.0267 0.0416 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9562 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.9382 -0.0661 -2.1142 35 1 3.0893 -0.9842 -1.1139 36 1 2.5966 -3.2368 -0.4950 37 1 1.3417 -2.5297 0.5520 38 1 -0.3832 -3.9005 -0.5457 39 1 0.9187 -4.9489 0.0671 40 1 -0.4431 -3.4347 -2.9655 41 1 0.8187 -4.1681 -3.9852 42 1 1.2400 -1.7387 -3.5571 43 1 2.5371 -2.7715 -2.9085 44 1 0.6795 0.1041 2.4842 45 1 2.9623 -0.9198 3.7940 46 1 1.8493 -2.2704 3.4696 47 1 0.0345 -1.0565 4.6456 48 1 1.1480 0.2938 4.9697 49 1 -2.0953 -2.2557 5.8300 50 1 3.3175 -0.2312 6.3168 51 1 2.6812 -2.6419 8.2191 52 1 4.1697 -1.5564 8.3048 53 1 2.6772 0.4624 8.6712 54 1 1.1881 -0.6221 8.5856 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714671413.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:11 Heat of formation + Delta-G solvation = -41.551269 kcal Electronic energy + Delta-G solvation = -31877.085559 eV Core-core repulsion = 27850.040164 eV Total energy + Delta-G solvation = -4027.045395 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.76752 -40.12719 -38.88434 -37.42668 -36.31482 -35.37174 -34.74601 -32.59835 -32.17446 -29.59966 -28.91397 -28.11881 -26.39573 -25.47599 -25.04315 -24.03674 -23.05679 -22.70754 -21.57824 -21.44238 -20.25222 -18.31377 -17.86139 -17.57899 -17.30489 -17.23868 -17.05964 -16.54892 -16.33251 -16.08122 -15.93877 -15.73857 -15.48203 -15.12786 -14.96162 -14.52326 -14.40588 -14.26590 -13.78085 -13.45800 -13.39290 -13.22073 -13.12517 -12.95421 -12.89853 -12.80655 -12.64032 -12.52548 -12.41310 -12.21608 -12.16480 -12.04349 -11.91195 -11.83722 -11.68745 -11.44725 -11.40303 -10.96873 -10.67041 -10.64483 -10.51213 -9.99389 -9.42608 -8.54378 -7.92396 -5.41170 1.39177 1.44920 1.53108 1.68064 2.20606 2.47482 2.69815 2.89526 3.09920 3.37710 3.47379 3.61651 3.82706 3.90394 3.97248 4.07698 4.12410 4.14245 4.24640 4.27644 4.32285 4.35682 4.40972 4.50612 4.53785 4.59841 4.60077 4.66500 4.70377 4.78163 4.79192 4.82379 4.88011 4.92568 4.93267 5.00288 5.01990 5.03226 5.08827 5.21260 5.27106 5.32176 5.47337 5.49086 5.53132 5.66759 5.76707 5.84095 5.97485 6.11260 6.40881 6.62722 7.09665 7.29613 7.80704 8.28845 9.06935 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011483 B = 0.003551 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.891351 B = 7882.163293 C = 9341.150778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.073 4.073 3 C -0.132 4.132 4 C 0.074 3.926 5 N -0.528 5.528 6 C 0.030 3.970 7 C 0.064 3.936 8 O -0.406 6.406 9 C 0.058 3.942 10 C 0.018 3.982 11 C 0.514 3.486 12 O -0.587 6.587 13 N -0.711 5.711 14 C 0.124 3.876 15 C 0.144 3.856 16 N -0.565 5.565 17 C -0.269 4.269 18 H 0.059 0.941 19 C -0.025 4.025 20 N -0.907 5.907 21 Si 0.943 3.057 22 H -0.283 1.283 23 H -0.287 1.287 24 H -0.280 1.280 25 C 0.098 3.902 26 C -0.185 4.185 27 C -0.210 4.210 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.027 0.973 36 H 0.020 0.980 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.029 0.971 44 H 0.409 0.591 45 H 0.043 0.957 46 H 0.028 0.972 47 H 0.083 0.917 48 H 0.045 0.955 49 H 0.255 0.745 50 H 0.110 0.890 51 H 0.074 0.926 52 H 0.109 0.891 53 H 0.104 0.896 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.481 7.876 -17.483 19.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.077 4.077 3 C -0.190 4.190 4 C -0.054 4.054 5 N -0.252 5.252 6 C -0.099 4.099 7 C -0.013 4.013 8 O -0.325 6.325 9 C -0.018 4.018 10 C -0.110 4.110 11 C 0.302 3.698 12 O -0.468 6.468 13 N -0.363 5.363 14 C -0.003 4.003 15 C 0.017 3.983 16 N -0.283 5.283 17 C -0.398 4.398 18 H 0.076 0.924 19 C -0.223 4.223 20 N -0.551 5.551 21 Si 0.772 3.228 22 H -0.209 1.209 23 H -0.213 1.213 24 H -0.206 1.206 25 C -0.010 4.010 26 C -0.223 4.223 27 C -0.251 4.251 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.132 0.868 35 H 0.045 0.955 36 H 0.038 0.962 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.048 0.952 44 H 0.246 0.754 45 H 0.061 0.939 46 H 0.046 0.954 47 H 0.101 0.899 48 H 0.063 0.937 49 H 0.065 0.935 50 H 0.127 0.873 51 H 0.093 0.907 52 H 0.127 0.873 53 H 0.122 0.878 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.523 7.256 -17.626 19.228 hybrid contribution 0.208 -1.060 0.681 1.277 sum 2.731 6.196 -16.945 18.248 Atomic orbital electron populations 1.21711 0.90739 1.02486 1.03296 1.20880 0.98878 0.97036 0.90894 1.21807 1.01058 0.91500 1.04659 1.22091 0.94629 0.91268 0.97436 1.62372 1.55662 1.04882 1.02314 1.22807 0.97138 0.93223 0.96707 1.22673 0.98951 0.95339 0.84369 1.87945 1.89359 1.39898 1.15292 1.22901 0.99036 0.88483 0.91410 1.22879 0.98432 0.98588 0.91125 1.21214 0.82106 0.81038 0.85413 1.90686 1.30591 1.39076 1.86472 1.46024 1.35545 1.47074 1.07629 1.21735 0.97871 0.95345 0.85339 1.20975 0.99426 0.94138 0.83725 1.43446 1.42531 1.19251 1.23074 1.19161 0.93097 0.90394 1.37196 0.92371 1.25537 0.95621 0.99836 1.01310 1.69992 1.00900 1.31970 1.52198 0.85654 0.77460 0.81963 0.77752 1.20920 1.21254 1.20569 1.21503 0.94185 0.99412 0.85862 1.23047 0.99099 0.96149 1.04045 1.23267 0.98851 0.98350 1.04598 0.92116 0.89316 0.93076 0.93001 0.88333 0.91172 0.86803 0.95453 0.96191 0.90972 0.91942 0.89364 0.91586 0.86282 0.86574 0.95223 0.75447 0.93874 0.95363 0.89911 0.93676 0.93512 0.87279 0.90737 0.87265 0.87817 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 7.66 71.98 0.55 -1.85 16 2 C -0.07 -1.59 0.72 -52.93 -0.04 -1.63 16 3 C -0.13 -2.13 8.39 71.98 0.60 -1.53 16 4 C 0.07 1.60 4.24 86.30 0.37 1.96 16 5 N -0.53 -12.40 3.43 -895.19 -3.07 -15.47 16 6 C 0.03 0.92 3.81 86.31 0.33 1.25 16 7 C 0.06 1.85 7.01 72.02 0.50 2.35 16 8 O -0.41 -11.20 10.83 -148.98 -1.61 -12.81 16 9 C 0.06 1.11 7.01 72.01 0.50 1.62 16 10 C 0.02 0.33 5.63 86.31 0.49 0.82 16 11 C 0.51 16.18 4.35 87.66 0.38 16.56 16 12 O -0.59 -23.26 13.22 -3.04 -0.04 -23.30 16 13 N -0.71 -22.84 5.38 -463.06 -2.49 -25.33 16 14 C 0.12 4.97 6.00 86.38 0.52 5.49 16 15 C 0.14 6.28 5.46 86.38 0.47 6.75 16 16 N -0.57 -27.13 2.80 -678.05 -1.90 -29.03 16 17 C -0.27 -14.32 8.70 84.03 0.73 -13.59 16 18 H 0.06 3.16 6.46 -2.91 -0.02 3.15 16 19 C -0.02 -1.34 4.89 84.86 0.42 -0.92 16 20 N -0.91 -49.98 11.38 21.65 0.25 -49.74 16 21 Si 0.94 44.17 29.63 68.60 2.03 46.21 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 24 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 25 C 0.10 4.02 6.56 44.99 0.30 4.32 16 26 C -0.19 -7.00 9.79 30.62 0.30 -6.70 16 27 C -0.21 -8.08 10.37 30.62 0.32 -7.76 16 28 H 0.06 1.08 6.92 -2.39 -0.02 1.06 16 29 H 0.09 1.28 8.14 -2.38 -0.02 1.27 16 30 H 0.05 1.22 6.86 -2.39 -0.02 1.21 16 31 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.11 1.68 7.86 -2.39 -0.02 1.66 16 35 H 0.03 0.75 7.19 -2.38 -0.02 0.73 16 36 H 0.02 0.72 7.81 -2.38 -0.02 0.70 16 37 H 0.07 2.57 4.48 -2.39 -0.01 2.56 16 38 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.12 1.45 8.06 -2.39 -0.02 1.43 16 43 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.41 11.17 6.97 -92.71 -0.65 10.52 16 45 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.08 4.09 5.32 -2.38 -0.01 4.08 16 48 H 0.04 1.80 8.07 -2.39 -0.02 1.78 16 49 H 0.26 13.63 8.32 -92.71 -0.77 12.86 16 50 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 51 H 0.07 3.18 6.32 -2.38 -0.02 3.16 16 52 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 53 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 54 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -66.75 411.33 0.14 -66.62 By element: Atomic # 1 Polarization: 35.48 SS G_CDS: 0.23 Total: 35.71 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 6.74 Total: 7.14 kcal Atomic # 7 Polarization: -112.36 SS G_CDS: -7.21 Total: -119.57 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -1.65 Total: -36.11 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.21 kcal Total: -66.75 0.14 -66.62 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714671413.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.064 kcal (2) G-P(sol) polarization free energy of solvation -66.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds