Wall clock time and date at job start Tue Mar 31 2020 22:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46916 * 2 1 4 4 C 1.53000 * 109.46916 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46996 * 55.00324 * 4 3 2 6 6 C 1.53001 * 109.47389 * 295.00537 * 4 3 2 7 7 C 1.53001 * 109.47084 * 175.00475 * 4 3 2 8 8 C 1.50703 * 109.47340 * 185.00416 * 7 4 3 9 9 O 1.21285 * 119.99492 * 359.97438 * 8 7 4 10 10 N 1.34768 * 120.00150 * 179.97438 * 8 7 4 11 11 C 1.47430 * 125.64944 * 4.96895 * 10 8 7 12 12 C 1.54908 * 104.83391 * 204.09432 * 11 10 8 13 13 C 1.55163 * 101.58066 * 322.98936 * 12 11 10 14 14 C 1.47025 * 125.65046 * 184.92892 * 10 8 7 15 15 H 1.08994 * 109.88361 * 59.55418 * 14 10 8 16 16 C 1.53003 * 109.87999 * 298.54441 * 14 10 8 17 17 N 1.46900 * 109.47055 * 175.16830 * 16 14 10 18 18 C 1.46907 * 111.00082 * 184.90285 * 17 16 14 19 19 C 1.50703 * 109.47120 * 180.02562 * 18 17 16 20 20 O 1.21293 * 119.99487 * 0.02562 * 19 18 17 21 21 N 1.34776 * 119.99934 * 179.97438 * 19 18 17 22 22 C 1.37090 * 119.99594 * 180.02562 * 21 19 18 23 23 H 1.07992 * 120.00477 * 0.02562 * 22 21 19 24 24 C 1.38960 * 119.99495 * 180.02562 * 22 21 19 25 25 N 1.31408 * 119.99882 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99749 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47074 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.46859 * 119.99964 * 26 24 22 29 29 H 1.48502 * 109.46875 * 239.99948 * 26 24 22 30 30 H 1.08994 * 109.47038 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46965 * 299.99665 * 1 2 3 32 32 H 1.08996 * 109.47504 * 59.99418 * 1 2 3 33 33 H 1.09000 * 109.46854 * 240.00877 * 2 1 3 34 34 H 1.08996 * 109.47504 * 120.00581 * 2 1 3 35 35 H 1.09000 * 109.46643 * 60.00748 * 3 2 1 36 36 H 1.08996 * 109.47509 * 300.00578 * 3 2 1 37 37 H 1.09002 * 109.46878 * 299.99859 * 6 4 3 38 38 H 1.08997 * 109.46853 * 59.99990 * 6 4 3 39 39 H 1.09003 * 109.46929 * 180.02562 * 6 4 3 40 40 H 1.09001 * 109.47233 * 65.00380 * 7 4 3 41 41 H 1.09005 * 109.47220 * 305.00156 * 7 4 3 42 42 H 1.09005 * 110.36475 * 322.93087 * 11 10 8 43 43 H 1.09002 * 110.36524 * 85.14418 * 11 10 8 44 44 H 1.09001 * 111.00799 * 81.05748 * 12 11 10 45 45 H 1.08996 * 111.00531 * 204.87915 * 12 11 10 46 46 H 1.09001 * 110.72100 * 277.13801 * 13 12 11 47 47 H 1.09000 * 110.71925 * 153.86512 * 13 12 11 48 48 H 1.08993 * 109.47428 * 295.17387 * 16 14 10 49 49 H 1.09011 * 109.46873 * 55.17193 * 16 14 10 50 50 H 1.00897 * 111.00044 * 308.85484 * 17 16 14 51 51 H 1.08999 * 109.46897 * 300.00646 * 18 17 16 52 52 H 1.08993 * 109.46810 * 60.00161 * 18 17 16 53 53 H 0.97003 * 119.99418 * 0.02562 * 21 19 18 54 54 H 0.97003 * 119.99933 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9329 0.8533 -0.8427 6 6 4.0806 0.8326 1.3063 7 6 4.0799 2.8796 -0.1262 8 6 5.5818 2.8707 -0.2505 9 8 6.1849 1.8185 -0.2392 10 7 6.2546 4.0318 -0.3742 11 6 5.6628 5.3800 -0.2994 12 6 6.6410 6.2868 -1.0871 13 6 8.0130 5.6720 -0.7035 14 6 7.7006 4.1639 -0.6052 15 1 7.9742 3.6672 -1.5360 16 6 8.4726 3.5444 0.5614 17 7 9.9118 3.5771 0.2687 18 6 10.6777 2.8858 1.3144 19 6 12.1463 2.9406 0.9807 20 8 12.5182 3.5009 -0.0287 21 7 13.0463 2.3680 1.8045 22 6 14.3823 2.4183 1.5011 23 1 14.7136 2.9171 0.6024 24 6 15.3102 1.8274 2.3502 25 7 14.9070 1.2209 3.4440 26 14 17.1306 1.8966 1.9373 27 1 17.3212 2.6317 0.6612 28 1 17.8588 2.5965 3.0258 29 1 17.6590 0.5159 1.7963 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6766 1.9564 -0.8899 37 1 3.7176 1.4219 2.1484 38 1 3.7173 -0.1911 1.3958 39 1 5.1706 0.8331 1.3060 40 1 3.7920 3.4460 0.7594 41 1 3.6449 3.3435 -1.0116 42 1 4.6780 5.3885 -0.7667 43 1 5.5924 5.7064 0.7382 44 1 6.4655 6.2115 -2.1602 45 1 6.5691 7.3219 -0.7532 46 1 8.3540 6.0586 0.2568 47 1 8.7521 5.8627 -1.4816 48 1 8.2738 4.1114 1.4707 49 1 8.1535 2.5113 0.7004 50 1 10.1049 3.1842 -0.6404 51 1 10.5049 3.3736 2.2738 52 1 10.3565 1.8459 1.3725 53 1 12.7486 1.9203 2.6119 54 1 15.5547 0.8081 4.0365 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716773473.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:26 Heat of formation + Delta-G solvation = -118.894533 kcal Electronic energy + Delta-G solvation = -29615.546382 eV Core-core repulsion = 25585.147131 eV Total energy + Delta-G solvation = -4030.399250 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.37992 -40.18808 -39.03219 -37.41362 -36.64473 -35.81329 -33.65320 -33.30582 -32.61875 -31.35821 -28.83760 -28.18995 -27.44938 -26.39390 -24.87445 -23.67389 -22.74657 -21.83899 -21.23402 -20.81823 -20.02493 -19.70179 -18.15774 -17.97394 -17.32455 -16.94941 -16.54596 -16.37883 -16.20520 -15.95620 -15.69346 -15.26839 -15.12815 -14.97567 -14.83062 -14.54327 -14.31890 -14.08636 -14.01936 -13.73614 -13.51489 -13.30365 -13.22878 -13.11813 -12.88039 -12.87134 -12.66526 -12.56303 -12.43027 -12.36959 -12.11951 -12.03159 -11.83761 -11.80835 -11.64816 -11.57627 -11.53891 -11.47282 -11.26580 -10.66957 -10.40446 -10.04964 -9.65289 -9.42797 -8.49032 -5.98450 1.35471 1.40558 1.55553 1.65625 1.93167 2.00259 2.28150 2.91950 3.17468 3.42180 3.55013 3.70373 3.79196 3.84355 3.89876 3.97570 4.20183 4.23111 4.26574 4.29289 4.31547 4.39529 4.43079 4.46890 4.50765 4.55348 4.67270 4.71058 4.72535 4.74533 4.81128 4.87328 4.93741 4.98338 5.04760 5.06119 5.08368 5.18034 5.18584 5.25807 5.31279 5.36436 5.38825 5.43620 5.44392 5.55308 5.58374 5.79117 6.02152 6.24865 6.56128 6.58990 7.09011 7.21696 7.51512 8.06243 8.68767 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014840 B = 0.001916 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.333142 B =14607.302784 C =16174.110870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C -0.106 4.106 4 C -0.075 4.075 5 H 0.054 0.946 6 C -0.151 4.151 7 C -0.122 4.122 8 C 0.516 3.484 9 O -0.579 6.579 10 N -0.616 5.616 11 C 0.096 3.904 12 C -0.126 4.126 13 C -0.113 4.113 14 C 0.140 3.860 15 H 0.054 0.946 16 C 0.059 3.941 17 N -0.666 5.666 18 C 0.066 3.934 19 C 0.440 3.560 20 O -0.619 6.619 21 N -0.572 5.572 22 C -0.335 4.335 23 H 0.081 0.919 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.997 3.003 27 H -0.272 1.272 28 H -0.269 1.269 29 H -0.271 1.271 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.041 0.959 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.106 0.894 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.024 0.976 50 H 0.341 0.659 51 H 0.104 0.896 52 H 0.054 0.946 53 H 0.396 0.604 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.794 6.869 -4.789 32.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C -0.143 4.143 4 C -0.094 4.094 5 H 0.072 0.928 6 C -0.208 4.208 7 C -0.162 4.162 8 C 0.307 3.693 9 O -0.459 6.459 10 N -0.351 5.351 11 C -0.026 4.026 12 C -0.164 4.164 13 C -0.151 4.151 14 C 0.036 3.964 15 H 0.072 0.928 16 C -0.071 4.071 17 N -0.298 5.298 18 C -0.066 4.066 19 C 0.227 3.773 20 O -0.506 6.506 21 N -0.209 5.209 22 C -0.465 4.465 23 H 0.099 0.901 24 C -0.214 4.214 25 N -0.562 5.562 26 Si 0.820 3.180 27 H -0.197 1.197 28 H -0.194 1.194 29 H -0.196 1.196 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.123 0.877 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.125 0.875 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.094 0.906 49 H 0.043 0.957 50 H 0.159 0.841 51 H 0.122 0.878 52 H 0.072 0.928 53 H 0.229 0.771 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -31.103 7.145 -5.010 32.304 hybrid contribution 1.127 -1.660 0.202 2.017 sum -29.976 5.485 -4.808 30.851 Atomic orbital electron populations 1.21757 0.95080 1.01742 1.02174 1.21591 0.96387 0.97146 1.01634 1.21610 0.92650 0.96998 1.03052 1.20881 0.95957 0.94323 0.98198 0.92792 1.21939 1.00953 1.00799 0.97144 1.21785 0.88630 0.99614 1.06127 1.21214 0.91446 0.81716 0.74952 1.90686 1.71448 1.32063 1.51698 1.48759 1.07656 1.07234 1.71410 1.22636 0.98412 0.79771 1.01759 1.22832 0.92586 1.00079 1.00883 1.22537 0.98435 0.91043 1.03129 1.21417 0.80674 0.98221 0.96121 0.92791 1.22268 0.86469 0.99300 0.99053 1.60115 1.05656 1.59240 1.04812 1.21505 0.89829 0.98045 0.97263 1.20702 0.88779 0.82772 0.85014 1.90479 1.81718 1.49014 1.29365 1.41933 1.06179 1.49808 1.23021 1.19746 0.82761 1.35347 1.08624 0.90125 1.26109 1.04781 0.95546 0.94954 1.69689 1.37115 1.36481 1.12919 0.84815 0.76495 0.78318 0.78348 1.19665 1.19414 1.19619 0.92919 0.92277 0.92311 0.92909 0.92376 0.90744 0.90741 0.92179 0.92756 0.94013 0.86758 0.86486 0.87650 0.89955 0.90183 0.87535 0.90504 0.90544 0.90599 0.95739 0.84108 0.87799 0.92822 0.77068 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 71.98 0.71 -0.69 16 2 C -0.13 -1.54 5.69 30.60 0.17 -1.36 16 3 C -0.11 -1.08 4.68 30.60 0.14 -0.94 16 4 C -0.07 -1.15 2.04 -10.79 -0.02 -1.18 16 5 H 0.05 1.10 7.96 -2.39 -0.02 1.08 16 6 C -0.15 -2.86 8.69 71.98 0.63 -2.24 16 7 C -0.12 -1.55 4.11 29.85 0.12 -1.43 16 8 C 0.52 11.33 7.38 87.66 0.65 11.98 16 9 O -0.58 -18.35 12.75 -3.05 -0.04 -18.39 16 10 N -0.62 -11.76 3.07 -788.04 -2.42 -14.18 16 11 C 0.10 0.97 6.74 86.85 0.59 1.55 16 12 C -0.13 -1.35 7.09 31.99 0.23 -1.13 16 13 C -0.11 -2.15 6.29 31.78 0.20 -1.95 16 14 C 0.14 3.35 3.03 45.34 0.14 3.49 16 15 H 0.05 1.50 8.12 -2.39 -0.02 1.48 16 16 C 0.06 1.72 5.11 86.30 0.44 2.16 16 17 N -0.67 -23.49 5.96 -517.91 -3.09 -26.57 16 18 C 0.07 2.56 6.16 85.56 0.53 3.09 16 19 C 0.44 22.22 7.82 87.66 0.69 22.90 16 20 O -0.62 -35.66 15.78 -3.07 -0.05 -35.71 16 21 N -0.57 -30.85 5.29 -306.98 -1.62 -32.47 16 22 C -0.34 -19.68 9.68 84.04 0.81 -18.87 16 23 H 0.08 5.02 7.16 -2.91 -0.02 5.00 16 24 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 25 N -0.92 -51.14 13.05 21.67 0.28 -50.86 16 26 Si 1.00 43.91 29.55 68.60 2.03 45.94 16 27 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 28 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 29 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.76 6.57 -2.39 -0.02 0.75 16 35 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.05 0.99 6.57 -2.39 -0.02 0.98 16 39 H 0.04 1.08 5.95 -2.39 -0.01 1.07 16 40 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.12 0.90 7.95 -2.38 -0.02 0.88 16 42 H 0.11 0.48 7.47 -2.38 -0.02 0.47 16 43 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.08 1.57 7.78 -2.39 -0.02 1.55 16 47 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.08 2.08 8.03 -2.39 -0.02 2.07 16 49 H 0.02 0.83 6.54 -2.38 -0.02 0.81 16 50 H 0.34 12.86 8.35 -89.70 -0.75 12.11 16 51 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 52 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 53 H 0.40 20.38 7.90 -92.71 -0.73 19.65 16 54 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -74.88 425.31 0.99 -73.90 By element: Atomic # 1 Polarization: 43.87 SS G_CDS: -0.60 Total: 43.27 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 6.49 Total: 15.06 kcal Atomic # 7 Polarization: -117.24 SS G_CDS: -6.84 Total: -124.08 kcal Atomic # 8 Polarization: -54.01 SS G_CDS: -0.09 Total: -54.10 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -74.88 0.99 -73.90 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716773473.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.999 kcal (2) G-P(sol) polarization free energy of solvation -74.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds