Wall clock time and date at job start Tue Mar 31 2020 22:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47318 * 2 1 4 4 C 1.52999 * 109.47318 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46997 * 55.00506 * 4 3 2 6 6 C 1.52998 * 109.47487 * 295.00431 * 4 3 2 7 7 C 1.50698 * 109.47319 * 175.00385 * 4 3 2 8 8 O 1.21279 * 120.00081 * 26.24538 * 7 4 3 9 9 N 1.34783 * 119.99963 * 206.25370 * 7 4 3 10 10 C 1.47283 * 125.79357 * 354.86479 * 9 7 4 11 11 C 1.54320 * 107.30455 * 178.92787 * 10 9 7 12 12 C 1.55161 * 102.94481 * 337.81534 * 11 10 9 13 13 H 1.08997 * 111.04192 * 277.41446 * 12 11 10 14 14 C 1.53000 * 111.00272 * 153.57209 * 12 11 10 15 15 C 1.53002 * 109.46651 * 72.81076 * 14 12 11 16 16 N 1.46900 * 109.46844 * 179.97438 * 15 14 12 17 17 C 1.46905 * 111.00199 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47167 * 179.97438 * 17 16 15 19 19 O 1.21291 * 120.00154 * 0.02562 * 18 17 16 20 20 N 1.34781 * 119.99440 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99436 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00275 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99573 * 180.02562 * 21 20 18 24 24 N 1.31402 * 120.00238 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99747 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46900 * 59.99996 * 25 23 21 27 27 H 1.48495 * 109.47305 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47409 * 300.00252 * 25 23 21 29 29 C 1.47429 * 125.64423 * 174.86737 * 9 7 4 30 30 H 1.08998 * 109.46948 * 299.99274 * 1 2 3 31 31 H 1.09002 * 109.47213 * 59.99557 * 1 2 3 32 32 H 1.09002 * 109.46798 * 179.97438 * 1 2 3 33 33 H 1.09010 * 109.46977 * 240.00294 * 2 1 3 34 34 H 1.09000 * 109.47710 * 120.00320 * 2 1 3 35 35 H 1.08998 * 109.46518 * 60.00463 * 3 2 1 36 36 H 1.09002 * 109.47340 * 300.00365 * 3 2 1 37 37 H 1.08997 * 109.47089 * 306.01329 * 6 4 3 38 38 H 1.09005 * 109.47164 * 66.00912 * 6 4 3 39 39 H 1.08996 * 109.47352 * 186.00890 * 6 4 3 40 40 H 1.09003 * 109.85661 * 59.50552 * 10 9 7 41 41 H 1.08999 * 110.00200 * 298.43509 * 10 9 7 42 42 H 1.09003 * 110.72188 * 219.45715 * 11 10 9 43 43 H 1.09000 * 110.87518 * 96.25351 * 11 10 9 44 44 H 1.09003 * 109.47030 * 192.80760 * 14 12 11 45 45 H 1.08996 * 109.47285 * 312.81301 * 14 12 11 46 46 H 1.09003 * 109.47146 * 299.99614 * 15 14 12 47 47 H 1.09004 * 109.47318 * 59.99856 * 15 14 12 48 48 H 1.00905 * 111.00312 * 56.04653 * 16 15 14 49 49 H 1.09001 * 109.47096 * 300.00342 * 17 16 15 50 50 H 1.09009 * 109.46783 * 59.99992 * 17 16 15 51 51 H 0.96990 * 120.00199 * 0.02562 * 20 18 17 52 52 H 0.97005 * 120.00205 * 180.02562 * 24 23 21 53 53 H 1.09000 * 110.36253 * 85.26291 * 29 9 7 54 54 H 1.08995 * 110.37074 * 323.04875 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8530 -0.8410 6 6 4.0796 0.8330 1.3082 7 6 4.0724 2.8578 -0.1231 8 8 3.3863 3.7807 0.2620 9 7 5.2843 3.0981 -0.6619 10 6 6.2629 2.0763 -1.0712 11 6 7.4839 2.8179 -1.6549 12 6 6.8928 4.1932 -2.0630 13 1 6.4095 4.1376 -3.0384 14 6 7.9706 5.2791 -2.0494 15 6 8.9062 5.0839 -3.2441 16 7 9.9406 6.1269 -3.2315 17 6 10.8599 5.9705 -4.3666 18 6 11.9042 7.0560 -4.3206 19 8 11.8850 7.8787 -3.4295 20 7 12.8602 7.1119 -5.2690 21 6 13.8106 8.0991 -5.2268 22 1 13.7930 8.8322 -4.4338 23 6 14.7959 8.1572 -6.2049 24 7 14.8164 7.2662 -7.1705 25 14 16.0904 9.5027 -6.1478 26 1 16.8520 9.4033 -4.8768 27 1 17.0200 9.3442 -7.2949 28 1 15.4288 10.8298 -6.2259 29 6 5.8521 4.4299 -0.9403 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9562 0.8900 36 1 1.6767 1.9564 -0.8900 37 1 3.6307 1.3565 2.1523 38 1 3.8067 -0.2216 1.3481 39 1 5.1642 0.9297 1.3558 40 1 5.8255 1.4277 -1.8302 41 1 6.5667 1.4841 -0.2080 42 1 7.8742 2.2921 -2.5263 43 1 8.2609 2.9407 -0.9003 44 1 7.4990 6.2598 -2.1136 45 1 8.5432 5.2111 -1.1245 46 1 9.3777 4.1032 -3.1799 47 1 8.3335 5.1519 -4.1691 48 1 10.4436 6.1268 -2.3567 49 1 11.3452 4.9962 -4.3096 50 1 10.3009 6.0439 -5.2996 51 1 12.8758 6.4538 -5.9813 52 1 15.5045 7.3065 -7.8531 53 1 6.3385 4.8284 -0.0499 54 1 5.0727 5.1105 -1.2828 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717077464.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:45 Heat of formation + Delta-G solvation = -124.370160 kcal Electronic energy + Delta-G solvation = -28578.652270 eV Core-core repulsion = 24548.015578 eV Total energy + Delta-G solvation = -4030.636691 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.33492 -40.14998 -39.12952 -37.04928 -36.85092 -35.88362 -34.10407 -33.25309 -32.73100 -30.84788 -29.63249 -27.69515 -27.59312 -25.97830 -24.87759 -23.56307 -23.03402 -21.68248 -21.35087 -20.92752 -19.93373 -19.81878 -18.26385 -17.82282 -17.29573 -17.01945 -16.49838 -16.41785 -16.23551 -15.96244 -15.73026 -15.39730 -15.22639 -14.87690 -14.85065 -14.45586 -14.23114 -14.08443 -13.80656 -13.76047 -13.52896 -13.41645 -13.24648 -13.12658 -13.02163 -12.96053 -12.82785 -12.69677 -12.42938 -12.21312 -12.12688 -12.12059 -11.90059 -11.87832 -11.71860 -11.57735 -11.50262 -11.44588 -11.43389 -10.74499 -10.33759 -10.01032 -9.69269 -9.27049 -8.46111 -5.94902 1.40375 1.42443 1.53183 1.56033 1.94596 2.06282 2.30009 2.94630 3.21334 3.34769 3.52725 3.66213 3.70990 3.79487 3.87629 3.95122 4.25236 4.28364 4.31614 4.32743 4.34361 4.35789 4.40168 4.46414 4.53204 4.56764 4.60750 4.65403 4.72586 4.75988 4.77676 4.82422 4.86043 4.90392 4.94766 4.99130 5.04435 5.11075 5.16328 5.20320 5.26073 5.32007 5.33716 5.40885 5.41200 5.43508 5.48770 5.91790 6.14628 6.45645 6.49179 6.61167 7.10215 7.13237 7.57103 8.12755 8.70993 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.042074 B = 0.001320 C = 0.001308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.327722 B =21206.798278 C =21407.568405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C -0.101 4.101 4 C -0.099 4.099 5 H 0.115 0.885 6 C -0.138 4.138 7 C 0.522 3.478 8 O -0.593 6.593 9 N -0.621 5.621 10 C 0.096 3.904 11 C -0.125 4.125 12 C -0.085 4.085 13 H 0.092 0.908 14 C -0.099 4.099 15 C 0.065 3.935 16 N -0.690 5.690 17 C 0.067 3.933 18 C 0.435 3.565 19 O -0.625 6.625 20 N -0.572 5.572 21 C -0.337 4.337 22 H 0.078 0.922 23 C -0.010 4.010 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.271 1.271 27 H -0.269 1.269 28 H -0.273 1.273 29 C 0.105 3.895 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.067 0.933 46 H 0.049 0.951 47 H 0.075 0.925 48 H 0.344 0.656 49 H 0.069 0.931 50 H 0.102 0.898 51 H 0.397 0.603 52 H 0.278 0.722 53 H 0.062 0.938 54 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.256 -22.716 10.862 33.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.139 4.139 4 C -0.120 4.120 5 H 0.133 0.867 6 C -0.196 4.196 7 C 0.313 3.687 8 O -0.473 6.473 9 N -0.354 5.354 10 C -0.025 4.025 11 C -0.162 4.162 12 C -0.105 4.105 13 H 0.110 0.890 14 C -0.137 4.137 15 C -0.064 4.064 16 N -0.323 5.323 17 C -0.066 4.066 18 C 0.223 3.777 19 O -0.512 6.512 20 N -0.209 5.209 21 C -0.467 4.467 22 H 0.096 0.904 23 C -0.210 4.210 24 N -0.560 5.560 25 Si 0.815 3.185 26 H -0.197 1.197 27 H -0.194 1.194 28 H -0.199 1.199 29 C -0.018 4.018 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.112 0.888 39 H 0.083 0.917 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.121 0.879 43 H 0.100 0.900 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.067 0.933 47 H 0.094 0.906 48 H 0.162 0.838 49 H 0.087 0.913 50 H 0.121 0.879 51 H 0.231 0.769 52 H 0.087 0.913 53 H 0.080 0.920 54 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.961 -21.288 11.192 33.251 hybrid contribution 1.154 0.250 -0.140 1.189 sum -21.807 -21.038 11.052 32.253 Atomic orbital electron populations 1.21789 0.95875 1.02118 1.01521 1.21551 0.95918 0.94876 1.03208 1.21444 0.92515 0.98149 1.01762 1.21348 0.97335 0.90954 1.02338 0.86717 1.21771 1.01391 1.02230 0.94187 1.21137 0.79413 0.92494 0.75705 1.90679 1.57741 1.48224 1.50691 1.48755 1.16229 1.08863 1.61518 1.22376 0.88619 0.90810 1.00739 1.22790 0.96539 0.94561 1.02327 1.22214 0.94644 0.95432 0.98223 0.89017 1.21377 0.95814 0.98448 0.98091 1.22015 0.92696 0.92228 0.99431 1.60063 1.16357 1.50489 1.05347 1.21518 0.92764 0.95368 0.96935 1.20975 0.84467 0.88815 0.83488 1.90489 1.77025 1.44902 1.38779 1.41920 1.25374 1.28212 1.25442 1.19643 1.06913 1.08574 1.11563 0.90421 1.26006 1.00111 1.00279 0.94617 1.69656 1.36082 1.36219 1.14050 0.85012 0.77486 0.77885 0.78103 1.19659 1.19389 1.19852 1.22251 0.96037 0.85187 0.98279 0.93248 0.93226 0.91610 0.90758 0.90551 0.92877 0.93166 0.93421 0.88769 0.91664 0.89261 0.89641 0.87876 0.90030 0.92074 0.91449 0.93328 0.90640 0.83801 0.91288 0.87946 0.76916 0.91262 0.91960 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.91 71.98 0.71 -0.70 16 2 C -0.12 -0.98 5.69 30.59 0.17 -0.81 16 3 C -0.10 -1.38 4.14 30.59 0.13 -1.25 16 4 C -0.10 -1.20 2.21 -11.54 -0.03 -1.23 16 5 H 0.11 0.83 7.24 -2.39 -0.02 0.82 16 6 C -0.14 -1.25 8.78 71.98 0.63 -0.62 16 7 C 0.52 10.66 6.94 87.66 0.61 11.26 16 8 O -0.59 -17.89 16.51 -3.03 -0.05 -17.94 16 9 N -0.62 -10.26 3.34 -811.12 -2.71 -12.96 16 10 C 0.10 0.83 6.33 86.68 0.55 1.38 16 11 C -0.12 -1.11 5.90 31.78 0.19 -0.92 16 12 C -0.09 -1.16 3.01 -9.40 -0.03 -1.19 16 13 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 14 C -0.10 -1.74 4.98 30.59 0.15 -1.58 16 15 C 0.06 1.29 5.59 86.30 0.48 1.77 16 16 N -0.69 -20.84 6.13 -517.90 -3.17 -24.01 16 17 C 0.07 2.20 6.17 85.56 0.53 2.73 16 18 C 0.43 20.63 7.82 87.66 0.69 21.32 16 19 O -0.63 -34.87 15.78 -3.06 -0.05 -34.92 16 20 N -0.57 -29.24 5.29 -306.97 -1.62 -30.87 16 21 C -0.34 -19.20 9.68 84.04 0.81 -18.38 16 22 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 23 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 24 N -0.92 -49.23 13.05 21.66 0.28 -48.95 16 25 Si 0.99 42.77 29.55 68.60 2.03 44.80 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 27 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 28 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 29 C 0.11 1.92 6.35 86.85 0.55 2.47 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 34 H 0.08 0.48 6.70 -2.39 -0.02 0.47 16 35 H 0.05 0.94 8.03 -2.39 -0.02 0.92 16 36 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.09 0.43 6.87 -2.38 -0.02 0.41 16 39 H 0.06 0.52 7.28 -2.39 -0.02 0.50 16 40 H 0.09 0.46 7.69 -2.39 -0.02 0.45 16 41 H 0.09 0.52 7.28 -2.39 -0.02 0.50 16 42 H 0.10 0.61 8.14 -2.39 -0.02 0.60 16 43 H 0.08 0.75 7.91 -2.39 -0.02 0.73 16 44 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.07 1.18 7.97 -2.39 -0.02 1.16 16 46 H 0.05 0.79 7.75 -2.39 -0.02 0.77 16 47 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 48 H 0.34 10.90 8.43 -89.69 -0.76 10.14 16 49 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.10 3.07 8.14 -2.38 -0.02 3.05 16 51 H 0.40 19.12 7.90 -92.72 -0.73 18.38 16 52 H 0.28 13.95 8.31 -92.70 -0.77 13.18 16 53 H 0.06 1.21 8.04 -2.39 -0.02 1.19 16 54 H 0.06 1.28 8.09 -2.39 -0.02 1.26 16 Total: -1.00 -75.20 430.31 0.72 -74.48 By element: Atomic # 1 Polarization: 36.81 SS G_CDS: -0.61 Total: 36.20 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 6.62 Total: 14.17 kcal Atomic # 7 Polarization: -109.58 SS G_CDS: -7.22 Total: -116.79 kcal Atomic # 8 Polarization: -52.77 SS G_CDS: -0.10 Total: -52.86 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -75.20 0.72 -74.48 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717077464.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.887 kcal (2) G-P(sol) polarization free energy of solvation -75.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds