Wall clock time and date at job start Tue Mar 31 2020 22:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47284 * 2 1 4 4 C 1.53001 * 109.47284 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46868 * 304.99636 * 4 3 2 6 6 C 1.52998 * 109.46966 * 64.99514 * 4 3 2 7 7 C 1.50702 * 109.47119 * 184.99898 * 4 3 2 8 8 O 1.21284 * 119.99983 * 344.38463 * 7 4 3 9 9 N 1.34774 * 120.00147 * 164.38818 * 7 4 3 10 10 C 1.47421 * 125.64630 * 355.15972 * 9 7 4 11 11 C 1.54903 * 104.92878 * 155.79737 * 10 9 7 12 12 C 1.55441 * 101.45003 * 37.00742 * 11 10 9 13 13 C 1.47018 * 125.65033 * 175.14175 * 9 7 4 14 14 H 1.09001 * 109.87978 * 300.49160 * 13 9 7 15 15 C 1.52995 * 109.88354 * 61.50330 * 13 9 7 16 16 N 1.46897 * 109.47188 * 305.00136 * 15 13 9 17 17 C 1.46901 * 111.00181 * 293.95140 * 16 15 13 18 18 C 1.46902 * 111.00027 * 170.00125 * 16 15 13 19 19 C 1.50700 * 109.47161 * 189.99880 * 18 16 15 20 20 O 1.21289 * 120.00124 * 359.97438 * 19 18 16 21 21 N 1.34777 * 120.00127 * 180.02562 * 19 18 16 22 22 C 1.37092 * 119.99925 * 180.02562 * 21 19 18 23 23 H 1.07993 * 120.00345 * 359.97438 * 22 21 19 24 24 C 1.38962 * 119.99490 * 179.97438 * 22 21 19 25 25 N 1.31413 * 119.99370 * 179.97438 * 24 22 21 26 26 Si 1.86794 * 120.00136 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.46921 * 90.00222 * 26 24 22 28 28 H 1.48505 * 109.46974 * 209.99842 * 26 24 22 29 29 H 1.48496 * 109.47386 * 329.99899 * 26 24 22 30 30 H 1.08998 * 109.47246 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47337 * 300.00435 * 1 2 3 32 32 H 1.09005 * 109.46929 * 60.00412 * 1 2 3 33 33 H 1.09001 * 109.47337 * 239.99565 * 2 1 3 34 34 H 1.09005 * 109.46929 * 119.99588 * 2 1 3 35 35 H 1.09001 * 109.47289 * 59.99536 * 3 2 1 36 36 H 1.09005 * 109.46801 * 299.99666 * 3 2 1 37 37 H 1.08993 * 109.47339 * 292.81483 * 6 4 3 38 38 H 1.08997 * 109.47227 * 52.81784 * 6 4 3 39 39 H 1.09007 * 109.46837 * 172.81365 * 6 4 3 40 40 H 1.09006 * 110.36967 * 274.69530 * 10 9 7 41 41 H 1.09007 * 110.36827 * 36.90197 * 10 9 7 42 42 H 1.09007 * 111.00435 * 155.13732 * 11 10 9 43 43 H 1.09001 * 111.00612 * 278.99167 * 11 10 9 44 44 H 1.09009 * 110.70729 * 206.14643 * 12 11 10 45 45 H 1.08999 * 110.71063 * 82.89324 * 12 11 10 46 46 H 1.08991 * 109.47375 * 65.00461 * 15 13 9 47 47 H 1.09006 * 109.46904 * 185.00119 * 15 13 9 48 48 H 1.09005 * 109.46594 * 60.00415 * 17 16 15 49 49 H 1.09001 * 109.47559 * 179.97438 * 17 16 15 50 50 H 1.08997 * 109.47724 * 300.00365 * 17 16 15 51 51 H 1.08993 * 109.47141 * 310.00033 * 18 16 15 52 52 H 1.09003 * 109.46837 * 69.99903 * 18 16 15 53 53 H 0.96998 * 119.99428 * 359.97438 * 21 19 18 54 54 H 0.97001 * 119.99501 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 3.9337 0.8530 0.8410 6 6 4.0795 0.8330 -1.3082 7 6 4.0725 2.8579 0.1232 8 8 3.3208 3.7880 -0.0788 9 7 5.3570 3.0901 0.4583 10 6 6.3477 2.0629 0.8278 11 6 7.7227 2.7023 0.5112 12 6 7.4753 4.1824 0.9165 13 6 6.0025 4.4098 0.5155 14 1 5.9543 4.8887 -0.4625 15 6 5.3051 5.2854 1.5584 16 7 3.8688 5.3543 1.2584 17 6 3.6285 6.0600 -0.0073 18 6 3.1303 5.9846 2.3609 19 6 1.6499 5.8189 2.1334 20 8 1.2492 5.2338 1.1494 21 7 0.7709 6.3218 3.0228 22 6 -0.5759 6.1706 2.8160 23 1 -0.9326 5.6489 1.9404 24 6 -1.4820 6.6887 3.7334 25 7 -2.7730 6.5441 3.5349 26 14 -0.8650 7.5904 5.2484 27 1 -0.7279 9.0369 4.9419 28 1 -1.8327 7.4096 6.3604 29 1 0.4558 7.0416 5.6475 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6767 1.9564 0.8899 36 1 1.6767 1.9563 -0.8901 37 1 3.8249 -0.2264 -1.3387 38 1 3.6147 1.3428 -2.1521 39 1 5.1619 0.9483 -1.3654 40 1 6.2736 1.8290 1.8899 41 1 6.2015 1.1626 0.2309 42 1 8.5104 2.2554 1.1179 43 1 7.9560 2.6215 -0.5505 44 1 8.1339 4.8496 0.3601 45 1 7.6077 4.3154 1.9902 46 1 5.4491 4.8548 2.5493 47 1 5.7301 6.2889 1.5331 48 1 4.1300 5.5321 -0.8185 49 1 2.5573 6.0963 -0.2055 50 1 4.0200 7.0749 0.0624 51 1 3.4085 5.5108 3.3022 52 1 3.3751 7.0460 2.4021 53 1 1.0913 6.7900 3.8095 54 1 -3.4056 6.9061 4.1751 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717362413.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:58 Heat of formation + Delta-G solvation = -60.416860 kcal Electronic energy + Delta-G solvation = -32366.043141 eV Core-core repulsion = 28338.179673 eV Total energy + Delta-G solvation = -4027.863468 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.26555 -40.22875 -38.61587 -37.35386 -36.52417 -35.78124 -33.69749 -33.21971 -31.79069 -31.27875 -29.30641 -27.51185 -27.33844 -26.23481 -25.31534 -23.72894 -22.46090 -22.08290 -21.14825 -20.97430 -20.11584 -19.35072 -17.99722 -17.74005 -17.32075 -16.76364 -16.44266 -16.32770 -15.92546 -15.83281 -15.34568 -15.21008 -15.07473 -14.89464 -14.70688 -14.25704 -14.24014 -14.06686 -13.96616 -13.56868 -13.33364 -13.25719 -13.12909 -13.03889 -12.90313 -12.77841 -12.55214 -12.47939 -12.37652 -12.21922 -12.10049 -12.00287 -11.90863 -11.81550 -11.71806 -11.62919 -11.45487 -11.42568 -11.40118 -10.21613 -10.16356 -9.91000 -9.37990 -8.56799 -8.39232 -5.97947 1.27079 1.33212 1.41479 2.06190 2.19975 2.22687 2.35356 2.75204 3.16958 3.36195 3.68721 3.82144 3.86796 3.94096 4.02016 4.04850 4.18730 4.28394 4.34513 4.36116 4.39684 4.40273 4.43899 4.45288 4.54636 4.66336 4.68580 4.69337 4.74506 4.80080 4.81980 4.90739 4.96912 5.00424 5.03301 5.06149 5.14126 5.18653 5.22354 5.25506 5.29350 5.38708 5.44713 5.46459 5.53894 5.56886 5.80211 5.95937 6.19891 6.45822 6.65420 6.95105 6.98749 7.46149 7.86690 8.08908 8.79353 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010359 B = 0.003937 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.367067 B = 7110.418824 C = 9144.663202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.089 4.089 4 C -0.094 4.094 5 H 0.098 0.902 6 C -0.130 4.130 7 C 0.496 3.504 8 O -0.489 6.489 9 N -0.618 5.618 10 C 0.092 3.908 11 C -0.121 4.121 12 C -0.117 4.117 13 C 0.140 3.860 14 H 0.052 0.948 15 C 0.042 3.958 16 N -0.495 5.495 17 C 0.078 3.922 18 C 0.050 3.950 19 C 0.451 3.549 20 O -0.576 6.576 21 N -0.603 5.603 22 C -0.319 4.319 23 H 0.050 0.950 24 C -0.018 4.018 25 N -0.940 5.940 26 Si 0.966 3.034 27 H -0.258 1.258 28 H -0.273 1.273 29 H -0.236 1.236 30 H 0.075 0.925 31 H 0.030 0.970 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.022 0.978 36 H 0.037 0.963 37 H 0.085 0.915 38 H 0.041 0.959 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.105 0.895 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.047 0.953 48 H 0.061 0.939 49 H 0.038 0.962 50 H 0.001 0.999 51 H 0.104 0.896 52 H 0.062 0.938 53 H 0.385 0.615 54 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.890 -10.913 -2.668 30.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.149 4.149 3 C -0.127 4.127 4 C -0.116 4.116 5 H 0.116 0.884 6 C -0.188 4.188 7 C 0.283 3.717 8 O -0.360 6.360 9 N -0.356 5.356 10 C -0.030 4.030 11 C -0.159 4.159 12 C -0.155 4.155 13 C 0.036 3.964 14 H 0.070 0.930 15 C -0.087 4.087 16 N -0.219 5.219 17 C -0.069 4.069 18 C -0.081 4.081 19 C 0.238 3.762 20 O -0.457 6.457 21 N -0.247 5.247 22 C -0.448 4.448 23 H 0.068 0.932 24 C -0.216 4.216 25 N -0.581 5.581 26 Si 0.786 3.214 27 H -0.183 1.183 28 H -0.198 1.198 29 H -0.159 1.159 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.041 0.959 36 H 0.056 0.944 37 H 0.104 0.896 38 H 0.060 0.940 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.124 0.876 43 H 0.096 0.904 44 H 0.112 0.888 45 H 0.105 0.895 46 H 0.097 0.903 47 H 0.065 0.935 48 H 0.079 0.921 49 H 0.057 0.943 50 H 0.019 0.981 51 H 0.122 0.878 52 H 0.080 0.920 53 H 0.220 0.780 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 26.709 -11.277 -3.503 29.203 hybrid contribution -0.790 1.724 0.907 2.102 sum 25.919 -9.553 -2.596 27.746 Atomic orbital electron populations 1.21788 0.96855 1.01961 1.00679 1.21524 0.95124 0.95112 1.03130 1.21245 0.94257 0.97034 1.00202 1.21193 0.95587 0.93409 1.01402 0.88385 1.21729 1.01407 1.01555 0.94061 1.20714 0.81049 0.91745 0.78200 1.91034 1.54561 1.44336 1.46058 1.48449 1.09762 1.07570 1.69798 1.22519 0.88074 0.91945 1.00492 1.22796 0.95980 0.94320 1.02756 1.22692 0.91814 0.98117 1.02905 1.21637 0.93039 0.84475 0.97280 0.92980 1.22770 0.87099 0.98963 0.99837 1.62079 1.07342 1.51934 1.00578 1.21908 1.01031 0.91905 0.92104 1.21828 0.90380 0.98891 0.97037 1.20905 0.89147 0.82051 0.84112 1.90599 1.80459 1.44220 1.30385 1.42079 1.05333 1.53680 1.23599 1.18947 0.81521 1.35570 1.08795 0.93158 1.26070 0.94825 0.98538 1.02142 1.69818 1.02470 1.47156 1.38703 0.85353 0.79670 0.79159 0.77225 1.18284 1.19801 1.15946 0.90623 0.95103 0.93823 0.89661 0.90946 0.95944 0.94376 0.89591 0.93978 0.90831 0.91603 0.89588 0.87629 0.90401 0.88830 0.89490 0.90300 0.93533 0.92065 0.94268 0.98112 0.87792 0.92004 0.78036 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.31 9.91 71.98 0.71 -3.59 16 2 C -0.11 -2.74 5.69 30.59 0.17 -2.56 16 3 C -0.09 -2.92 4.01 30.59 0.12 -2.80 16 4 C -0.09 -2.39 1.97 -11.54 -0.02 -2.41 16 5 H 0.10 2.08 7.75 -2.39 -0.02 2.06 16 6 C -0.13 -2.41 8.55 71.98 0.62 -1.79 16 7 C 0.50 15.36 6.68 87.66 0.59 15.95 16 8 O -0.49 -20.32 8.79 7.39 0.07 -20.25 16 9 N -0.62 -13.98 3.07 -788.07 -2.42 -16.39 16 10 C 0.09 1.22 6.40 86.85 0.56 1.78 16 11 C -0.12 -1.00 7.11 32.08 0.23 -0.77 16 12 C -0.12 -1.28 6.49 31.88 0.21 -1.07 16 13 C 0.14 2.88 2.90 45.34 0.13 3.01 16 14 H 0.05 1.24 6.87 -2.39 -0.02 1.23 16 15 C 0.04 1.02 4.58 86.30 0.40 1.41 16 16 N -0.49 -17.47 1.79 -927.07 -1.66 -19.13 16 17 C 0.08 3.01 6.95 127.69 0.89 3.90 16 18 C 0.05 1.85 5.45 85.56 0.47 2.32 16 19 C 0.45 22.86 7.48 87.66 0.66 23.52 16 20 O -0.58 -34.94 12.97 7.38 0.10 -34.84 16 21 N -0.60 -31.34 5.09 -306.99 -1.56 -32.90 16 22 C -0.32 -20.03 10.16 84.04 0.85 -19.18 16 23 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 24 C -0.02 -1.07 5.50 84.93 0.47 -0.61 16 25 N -0.94 -59.61 13.96 21.67 0.30 -59.31 16 26 Si 0.97 41.71 27.74 68.60 1.90 43.61 16 27 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 28 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 29 H -0.24 -8.79 6.52 99.48 0.65 -8.14 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.08 1.65 6.73 -2.39 -0.02 1.63 16 34 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.04 1.45 8.08 -2.38 -0.02 1.43 16 37 H 0.09 1.20 6.93 -2.39 -0.02 1.18 16 38 H 0.04 0.94 8.13 -2.39 -0.02 0.92 16 39 H 0.07 1.08 6.47 -2.38 -0.02 1.07 16 40 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.09 0.93 5.90 -2.38 -0.01 0.92 16 42 H 0.11 0.42 8.14 -2.38 -0.02 0.40 16 43 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 45 H 0.09 0.82 7.78 -2.39 -0.02 0.80 16 46 H 0.08 1.77 7.82 -2.39 -0.02 1.75 16 47 H 0.05 1.00 8.12 -2.38 -0.02 0.98 16 48 H 0.06 2.29 5.52 -2.38 -0.01 2.28 16 49 H 0.04 1.92 5.79 -2.39 -0.01 1.91 16 50 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 51 H 0.10 3.32 7.93 -2.39 -0.02 3.30 16 52 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 53 H 0.38 16.89 5.76 -92.71 -0.53 16.35 16 54 H 0.28 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -87.28 404.79 4.05 -83.23 By element: Atomic # 1 Polarization: 38.61 SS G_CDS: 0.28 Total: 38.89 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: 7.04 Total: 17.10 kcal Atomic # 7 Polarization: -122.40 SS G_CDS: -5.34 Total: -127.74 kcal Atomic # 8 Polarization: -55.26 SS G_CDS: 0.16 Total: -55.10 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.90 Total: 43.61 kcal Total: -87.28 4.05 -83.23 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717362413.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.818 kcal (2) G-P(sol) polarization free energy of solvation -87.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds