Wall clock time and date at job start Tue Mar 31 2020 22:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47052 * 2 1 4 4 C 1.52999 * 109.47050 * 120.00073 * 2 1 3 5 5 H 1.08999 * 109.46933 * 305.51336 * 4 2 1 6 6 C 1.53004 * 109.47311 * 65.51407 * 4 2 1 7 7 C 1.52993 * 109.47086 * 185.00211 * 6 4 2 8 8 N 1.46504 * 109.47011 * 180.02562 * 7 6 4 9 9 C 1.34772 * 120.00085 * 179.97438 * 8 7 6 10 10 O 1.21281 * 119.99967 * 359.97438 * 9 8 7 11 11 C 1.50700 * 120.00080 * 179.97438 * 9 8 7 12 12 H 1.08998 * 115.55054 * 325.67068 * 11 9 8 13 13 C 1.52996 * 117.49722 * 111.37997 * 11 9 8 14 14 C 1.53001 * 60.00333 * 107.49157 * 13 11 9 15 15 C 1.53004 * 117.49753 * 252.51308 * 14 13 11 16 16 C 1.52990 * 117.51998 * 107.47829 * 14 13 11 17 17 N 1.46901 * 109.47253 * 185.51811 * 4 2 1 18 18 C 1.46904 * 110.99830 * 299.93587 * 17 4 2 19 19 C 1.50696 * 109.47416 * 176.66694 * 18 17 4 20 20 O 1.21296 * 119.99912 * 359.97438 * 19 18 17 21 21 N 1.34770 * 120.00136 * 179.97438 * 19 18 17 22 22 C 1.37104 * 119.99924 * 179.97438 * 21 19 18 23 23 H 1.08000 * 120.00062 * 0.02562 * 22 21 19 24 24 C 1.38953 * 119.99841 * 180.02562 * 22 21 19 25 25 N 1.31407 * 120.00106 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99690 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47307 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47020 * 120.00143 * 26 24 22 29 29 H 1.48501 * 109.46778 * 239.99833 * 26 24 22 30 30 H 1.08995 * 109.47623 * 299.99825 * 1 2 3 31 31 H 1.09002 * 109.47194 * 59.99999 * 1 2 3 32 32 H 1.09007 * 109.47207 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47114 * 240.00077 * 2 1 3 34 34 H 1.09002 * 109.46733 * 176.02522 * 3 2 1 35 35 H 1.08995 * 109.47365 * 296.02838 * 3 2 1 36 36 H 1.09006 * 109.46873 * 56.03154 * 3 2 1 37 37 H 1.08998 * 109.46606 * 65.00030 * 6 4 2 38 38 H 1.09001 * 109.46755 * 305.00485 * 6 4 2 39 39 H 1.08998 * 109.47723 * 59.99870 * 7 6 4 40 40 H 1.09011 * 109.46834 * 299.99879 * 7 6 4 41 41 H 0.97003 * 119.99829 * 359.97438 * 8 7 6 42 42 H 1.09001 * 117.50055 * 214.97548 * 13 11 9 43 43 H 1.09003 * 117.49980 * 0.02562 * 13 11 9 44 44 H 1.09001 * 109.46908 * 128.61613 * 15 14 13 45 45 H 1.09001 * 109.46985 * 248.62115 * 15 14 13 46 46 H 1.08999 * 109.47219 * 8.61757 * 15 14 13 47 47 H 1.08999 * 109.47802 * 351.37595 * 16 14 13 48 48 H 1.09001 * 109.47424 * 111.37448 * 16 14 13 49 49 H 1.08998 * 109.47476 * 231.37310 * 16 14 13 50 50 H 1.00899 * 110.99896 * 175.98214 * 17 4 2 51 51 H 1.09009 * 109.46855 * 296.66202 * 18 17 4 52 52 H 1.08996 * 109.47593 * 56.66000 * 18 17 4 53 53 H 0.97000 * 120.00539 * 0.02562 * 21 19 18 54 54 H 0.97007 * 120.00218 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.5982 -0.2676 2.1364 6 6 1.6463 -2.1983 1.1819 7 6 2.0459 -2.8925 2.4853 8 7 1.6695 -4.3069 2.4206 9 6 1.9262 -5.1210 3.4635 10 8 2.4692 -4.6828 4.4555 11 6 1.5385 -6.5757 3.3971 12 1 0.6229 -6.7936 2.8474 13 6 2.6680 -7.6052 3.3256 14 6 1.8568 -7.4479 4.6133 15 6 2.5443 -6.7763 5.8038 16 6 0.8656 -8.5591 4.9645 17 7 3.5029 -0.6070 1.3177 18 6 4.1339 -1.2105 0.1363 19 6 5.6250 -1.0025 0.2018 20 8 6.1140 -0.4093 1.1401 21 7 6.4152 -1.4754 -0.7822 22 6 7.7718 -1.2856 -0.7228 23 1 8.2072 -0.7575 0.1126 24 6 8.5865 -1.7728 -1.7376 25 7 8.0567 -2.4149 -2.7543 26 14 10.4348 -1.5149 -1.6563 27 1 10.7765 -0.7676 -0.4194 28 1 11.1185 -2.8331 -1.6437 29 1 10.8787 -0.7384 -2.8418 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1276 1.4433 0.0712 35 1 1.7359 1.9354 -0.9234 36 1 1.6197 1.9765 0.8523 37 1 2.1589 -2.6730 0.3453 38 1 0.5685 -2.2809 1.0417 39 1 1.5333 -2.4177 3.3219 40 1 3.1238 -2.8098 2.6254 41 1 1.2355 -4.6574 1.6270 42 1 2.4957 -8.5008 2.7286 43 1 3.6915 -7.2304 3.3270 44 1 1.9122 -5.9732 6.1827 45 1 2.7083 -7.5121 6.5911 46 1 3.5024 -6.3652 5.4855 47 1 0.7842 -9.2517 4.1269 48 1 1.2177 -9.0949 5.8460 49 1 -0.1116 -8.1225 5.1711 50 1 3.8583 -1.0188 2.1675 51 1 3.9168 -2.2785 0.1141 52 1 3.7408 -0.7410 -0.7654 53 1 6.0243 -1.9494 -1.5327 54 1 8.6255 -2.7554 -3.4626 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717718613.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:16 Heat of formation + Delta-G solvation = -89.850863 kcal Electronic energy + Delta-G solvation = -30176.702530 eV Core-core repulsion = 26147.562707 eV Total energy + Delta-G solvation = -4029.139822 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.32190 -40.49983 -39.25898 -38.22296 -36.02751 -35.91931 -34.26294 -33.26166 -31.93594 -30.29600 -28.63927 -28.36039 -27.81007 -26.68895 -25.68536 -24.42259 -22.52932 -21.64673 -21.38298 -20.23430 -20.04761 -19.58895 -18.17459 -18.09885 -17.25956 -16.81128 -16.69871 -16.28672 -15.99650 -15.82353 -15.56650 -15.42179 -15.05445 -14.97426 -14.86939 -14.51579 -14.44222 -14.07514 -13.99618 -13.61352 -13.50564 -13.38890 -13.23602 -13.01395 -12.92111 -12.86490 -12.74189 -12.73707 -12.66802 -12.42368 -12.15754 -12.14991 -12.10542 -11.63341 -11.57434 -11.50330 -11.23707 -11.19677 -10.92401 -10.49247 -10.34329 -10.12975 -10.01913 -9.24920 -8.48037 -5.96321 1.34670 1.39767 1.46940 1.53972 2.04931 2.09783 2.28069 2.77249 2.96403 3.19051 3.52189 3.62484 3.64917 3.71586 3.81827 3.96505 4.03174 4.13746 4.17506 4.24682 4.26941 4.29053 4.42705 4.50676 4.53569 4.63799 4.66399 4.68977 4.80291 4.81797 4.84862 4.92783 4.96000 5.01409 5.04663 5.07367 5.09010 5.10841 5.14706 5.23185 5.27964 5.36066 5.39815 5.41688 5.52522 5.56010 5.62671 5.91250 6.14561 6.40452 6.53468 6.59686 7.12241 7.24886 7.55651 8.11956 8.69658 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.007510 B = 0.002909 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3727.262337 B = 9622.413283 C =12461.750380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 C -0.139 4.139 4 C 0.099 3.901 5 H 0.091 0.909 6 C -0.158 4.158 7 C 0.123 3.877 8 N -0.714 5.714 9 C 0.529 3.471 10 O -0.578 6.578 11 C -0.188 4.188 12 H 0.154 0.846 13 C -0.144 4.144 14 C -0.101 4.101 15 C -0.101 4.101 16 C -0.110 4.110 17 N -0.671 5.671 18 C 0.066 3.934 19 C 0.436 3.564 20 O -0.624 6.624 21 N -0.574 5.574 22 C -0.332 4.332 23 H 0.075 0.925 24 C -0.012 4.012 25 N -0.919 5.919 26 Si 0.990 3.010 27 H -0.276 1.276 28 H -0.270 1.270 29 H -0.269 1.269 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.040 0.960 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.064 0.936 40 H 0.035 0.965 41 H 0.416 0.584 42 H 0.132 0.868 43 H 0.077 0.923 44 H 0.048 0.952 45 H 0.064 0.936 46 H 0.036 0.964 47 H 0.076 0.924 48 H 0.069 0.931 49 H 0.066 0.934 50 H 0.340 0.660 51 H 0.063 0.937 52 H 0.105 0.895 53 H 0.396 0.604 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.812 -10.430 5.419 25.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.105 4.105 3 C -0.196 4.196 4 C -0.011 4.011 5 H 0.109 0.891 6 C -0.198 4.198 7 C -0.002 4.002 8 N -0.366 5.366 9 C 0.317 3.683 10 O -0.457 6.457 11 C -0.208 4.208 12 H 0.172 0.828 13 C -0.181 4.181 14 C -0.102 4.102 15 C -0.158 4.158 16 C -0.167 4.167 17 N -0.303 5.303 18 C -0.066 4.066 19 C 0.224 3.776 20 O -0.510 6.510 21 N -0.211 5.211 22 C -0.462 4.462 23 H 0.093 0.907 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.814 3.186 27 H -0.201 1.201 28 H -0.195 1.195 29 H -0.194 1.194 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.125 0.875 39 H 0.082 0.918 40 H 0.053 0.947 41 H 0.253 0.747 42 H 0.150 0.850 43 H 0.095 0.905 44 H 0.067 0.933 45 H 0.082 0.918 46 H 0.055 0.945 47 H 0.095 0.905 48 H 0.088 0.912 49 H 0.085 0.915 50 H 0.159 0.841 51 H 0.081 0.919 52 H 0.123 0.877 53 H 0.230 0.770 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.996 -9.136 6.314 24.641 hybrid contribution 1.002 -0.783 -0.547 1.384 sum -20.994 -9.919 5.768 23.925 Atomic orbital electron populations 1.21845 0.93050 1.02650 1.02348 1.21142 0.96763 0.96010 0.96621 1.21690 1.00962 0.95913 1.01051 1.21722 0.86136 0.93256 0.99979 0.89075 1.22543 1.04352 0.96816 0.96059 1.21245 0.98863 0.80983 0.99076 1.45866 1.62027 1.09556 1.19175 1.20345 0.77462 0.88211 0.82307 1.90716 1.44095 1.77762 1.33168 1.22450 1.03418 0.88071 1.06905 0.82844 1.23286 0.94712 0.99568 1.00556 1.21693 1.00710 0.98389 0.89379 1.21270 0.99326 0.98967 0.96228 1.21391 0.97142 0.95461 1.02747 1.60206 1.05027 1.61448 1.03572 1.21548 0.89688 0.98769 0.96635 1.21011 0.90141 0.82915 0.83570 1.90497 1.77135 1.46976 1.36428 1.41926 1.06636 1.50820 1.21755 1.19664 0.83186 1.35640 1.07716 0.90679 1.26000 1.04669 0.95935 0.94564 1.69668 1.37964 1.37693 1.10706 0.84910 0.77065 0.78342 0.78262 1.20060 1.19502 1.19410 0.92246 0.92094 0.91175 0.91427 0.94065 0.92809 0.92773 0.90695 0.87510 0.91812 0.94700 0.74731 0.85004 0.90470 0.93291 0.91753 0.94465 0.90518 0.91201 0.91502 0.84128 0.91943 0.87685 0.77030 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.96 71.98 0.65 -1.28 16 2 C -0.09 -1.69 1.95 -10.79 -0.02 -1.71 16 3 C -0.14 -3.29 9.03 71.98 0.65 -2.64 16 4 C 0.10 2.12 2.13 44.92 0.10 2.21 16 5 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 6 C -0.16 -2.69 4.45 30.59 0.14 -2.55 16 7 C 0.12 2.69 5.44 86.38 0.47 3.16 16 8 N -0.71 -13.64 5.56 -463.06 -2.57 -16.21 16 9 C 0.53 12.70 7.59 87.66 0.67 13.37 16 10 O -0.58 -19.10 13.10 -3.03 -0.04 -19.14 16 11 C -0.19 -3.12 5.91 -11.54 -0.07 -3.19 16 12 H 0.15 1.51 8.14 -2.39 -0.02 1.49 16 13 C -0.14 -2.36 9.53 30.59 0.29 -2.07 16 14 C -0.10 -1.73 2.70 -52.18 -0.14 -1.87 16 15 C -0.10 -2.28 8.09 71.98 0.58 -1.70 16 16 C -0.11 -1.19 9.85 71.98 0.71 -0.48 16 17 N -0.67 -20.97 4.92 -495.56 -2.44 -23.41 16 18 C 0.07 2.26 5.22 85.55 0.45 2.70 16 19 C 0.44 21.31 7.83 87.66 0.69 22.00 16 20 O -0.62 -35.90 15.85 -3.08 -0.05 -35.95 16 21 N -0.57 -30.07 5.29 -306.99 -1.62 -31.69 16 22 C -0.33 -19.34 9.68 84.04 0.81 -18.52 16 23 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 24 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 25 N -0.92 -49.96 13.05 21.66 0.28 -49.67 16 26 Si 0.99 43.81 29.55 68.60 2.03 45.84 16 27 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 28 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 29 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.74 6.48 -2.38 -0.02 0.72 16 33 H 0.07 1.37 6.64 -2.39 -0.02 1.36 16 34 H 0.04 1.28 7.19 -2.39 -0.02 1.26 16 35 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.07 1.33 6.22 -2.39 -0.01 1.32 16 38 H 0.11 1.23 6.36 -2.39 -0.02 1.21 16 39 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 40 H 0.03 1.02 6.87 -2.38 -0.02 1.00 16 41 H 0.42 5.08 8.47 -92.71 -0.79 4.29 16 42 H 0.13 1.42 8.05 -2.39 -0.02 1.40 16 43 H 0.08 1.65 8.05 -2.39 -0.02 1.63 16 44 H 0.05 1.26 7.26 -2.39 -0.02 1.25 16 45 H 0.06 1.19 7.92 -2.39 -0.02 1.17 16 46 H 0.04 1.03 7.01 -2.39 -0.02 1.02 16 47 H 0.08 0.58 7.90 -2.39 -0.02 0.56 16 48 H 0.07 0.71 7.92 -2.39 -0.02 0.69 16 49 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.34 11.76 7.12 -89.69 -0.64 11.12 16 51 H 0.06 1.91 6.38 -2.38 -0.02 1.90 16 52 H 0.11 3.28 6.24 -2.39 -0.01 3.26 16 53 H 0.40 19.56 7.90 -92.71 -0.73 18.83 16 54 H 0.28 14.05 8.31 -92.70 -0.77 13.28 16 Total: -1.00 -75.58 423.09 0.78 -74.80 By element: Atomic # 1 Polarization: 49.43 SS G_CDS: -1.24 Total: 48.19 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 6.43 Total: 7.24 kcal Atomic # 7 Polarization: -114.63 SS G_CDS: -6.35 Total: -120.98 kcal Atomic # 8 Polarization: -55.00 SS G_CDS: -0.09 Total: -55.09 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -75.58 0.78 -74.80 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717718613.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.053 kcal (2) G-P(sol) polarization free energy of solvation -75.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds